BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738959.2.3
(725 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO168704.1|CO168704 NDL1_2_A02.b1_A029 Needles control P... 54 8e-006
gb|AW290603.1|AW290603 NXNV044A08F Nsf Xylem Normal wood Ve... 52 3e-005
gb|BX252587.1|BX252587 BX252587 Pinus pinaster differenciat... 52 3e-005
gb|BX253086.1|BX253086 BX253086 Pinus pinaster differenciat... 52 3e-005
gb|BX254029.1|BX254029 BX254029 Pinus pinaster differenciat... 52 3e-005
gb|AW758685.1|AW758685 NXNV_085_C06_F Nsf Xylem Normal wood... 52 3e-005
gb|AW784129.1|AW784129 NXNV_103_E03_F Nsf Xylem Normal wood... 52 3e-005
gb|BE123641.1|BE123641 NXNV_150_B11_F Nsf Xylem Normal wood... 52 3e-005
gb|BE241113.1|BE241113 NXNV_173_A08_F Nsf Xylem Normal wood... 52 3e-005
gb|BG040600.1|BG040600 NXSI_113_A01_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|BG275186.1|BG275186 NXSI_140_H02_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|BG275851.1|BG275851 NXSI_148_F04_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|BQ695559.1|BQ695559 NXPV_030_A03_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|BQ696029.1|BQ696029 NXPV_035_F01_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|BQ697176.1|BQ697176 NXPV_050_D09_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|BQ698583.1|BQ698583 NXPV_071_F08_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|CD027267.1|CD027267 NXNV044A08 Nsf Xylem Normal wood Ver... 52 3e-005
gb|CF389128.1|CF389128 RTDR2_13_D11.g1_A021 Loblolly pine r... 52 3e-005
gb|CO158722.1|CO158722 FLD1_8_G04.g1_A029 Root flooded Pinu... 52 3e-005
gb|CO166181.1|CO166181 FLD1_59_H09.g1_A029 Root flooded Pin... 52 3e-005
gb|CO200454.1|CO200454 GEO2_7_C04.g1_A032 Root gravitropism... 52 3e-005
gb|CO370420.1|CO370420 RTK1_67_F07.g1_A029 Roots minus pota... 52 3e-005
gb|CV036240.1|CV036240 RTNACL1_57_F03.g1_A029 Roots plus ad... 52 3e-005
gb|CX646741.1|CX646741 COLD1_11_E12.b1_A029 Root cold Pinus... 52 3e-005
gb|CX646821.1|CX646821 COLD1_11_E12.g1_A029 Root cold Pinus... 52 3e-005
gb|CX650089.1|CX650089 COLD1_43_A08.g1_A029 Root cold Pinus... 52 3e-005
gb|CX652868.1|CX652868 COLD1_62_B04.b1_A029 Root cold Pinus... 52 3e-005
gb|DR048632.1|DR048632 RTBOR1_10_E05.b1_A029 Roots plus add... 52 3e-005
gb|DR048707.1|DR048707 RTBOR1_10_E05.g1_A029 Roots plus add... 52 3e-005
gb|DR049907.1|DR049907 RTBOR1_19_H03.g1_A029 Roots plus add... 52 3e-005
gb|DR061070.1|DR061070 RTNIT1_31_H03.g1_A029 Roots minus ni... 52 3e-005
gb|DR069271.1|DR069271 RTDK1_6_C04.b1_A029 Roots, dark Pinu... 52 3e-005
gb|DR069574.1|DR069574 RTDK1_8_C04.b1_A029 Roots, dark Pinu... 52 3e-005
gb|DR071320.1|DR071320 RTDK1_19_C12.b1_A029 Roots, dark Pin... 52 3e-005
gb|DR094453.1|DR094453 STRR1_14_E02.g1_A033 Stem Response R... 52 3e-005
gb|DR688096.1|DR688096 EST1078180 Normalized pine embryo li... 52 3e-005
gb|DT634473.1|DT634473 EST1149404 Normalized pine embryo li... 52 3e-005
gb|BX255109.1|BX255109 BX255109 Pinus pinaster differenciat... 48 5e-004
gb|BX253417.1|BX253417 BX253417 Pinus pinaster differenciat... 48 5e-004
gb|BE644028.1|BE644028 NXCI_053_G03_F NXCI (Nsf Xylem Compr... 48 5e-004
gb|BF186163.1|BF186163 NXCI_133_G06_F NXCI (Nsf Xylem Compr... 48 5e-004
gb|BF518118.1|BF518118 NXSI_035_C02_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BF610263.1|BF610263 NXSI_057_B05_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BX676890.1|BX676890 BX676890 RN Pinus pinaster cDNA clon... 48 5e-004
gb|CO162913.1|CO162913 FLD1_38_G02.b1_A029 Root flooded Pin... 48 5e-004
gb|CO166920.1|CO166920 FLD1_65_A12.g1_A029 Root flooded Pin... 48 5e-004
gb|CO169434.1|CO169434 NDL1_7_B11.b1_A029 Needles control P... 48 5e-004
gb|CO169507.1|CO169507 NDL1_7_B11.g1_A029 Needles control P... 48 5e-004
gb|CV033876.1|CV033876 RTNACL1_37_D08.b1_A029 Roots plus ad... 48 5e-004
gb|CX650237.1|CX650237 COLD1_44_H04.b1_A029 Root cold Pinus... 48 5e-004
gb|DR055465.1|DR055465 RTCA1_23_G10.g2_A029 Roots minus cal... 48 5e-004
gb|BE496383.1|BE496383 NXCI_017_A02_F NXCI (Nsf Xylem Compr... 44 0.008
gb|CD024673.1|CD024673 NXRV075_G01_F NXRV (Nsf Xylem Root w... 44 0.008
gb|CO367783.1|CO367783 RTK1_36_C12.g1_A029 Roots minus pota... 44 0.008
gb|DR081469.1|DR081469 RTFEPL1_29_G11.g1_A029 Roots plus ad... 44 0.008
gb|BE582468.1|BE582468 NXCI_033_G07_F NXCI (Nsf Xylem Compr... 42 0.031
gb|BG832809.1|BG832809 NXPV_081_A01_F NXPV (Nsf Xylem Plani... 42 0.031
gb|BQ696902.1|BQ696902 NXPV_046_F10_F NXPV (Nsf Xylem Plani... 42 0.031
gb|BQ697144.1|BQ697144 NXPV_050_A11_F NXPV (Nsf Xylem Plani... 42 0.031
gb|AL750804.1|AL750804 AL750804 RN Pinus pinaster cDNA clon... 40 0.12
gb|CO168770.1|CO168770 NDL1_2_A02.g1_A029 Needles control P... 40 0.12
gb|AW042723.1|AW042723 ST24F05 Pine TriplEx shoot tip libra... 38 0.48
>gb|CO168704.1|CO168704 NDL1_2_A02.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_A02_A029 3', mRNA sequence
Length = 430
Score = 54.0 bits (27), Expect = 8e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 283 aacactcctgatgacccccgccagaggaagccggacatcacaaaggc 329
|||||||| ||||| |||||| ||||||| || ||||||||||||||
Sbjct: 87 aacactccagatgatccccgcaagaggaaaccagacatcacaaaggc 133
>gb|AW290603.1|AW290603 NXNV044A08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044A08 5', mRNA sequence
Length = 370
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 252 atgaacattgatgatggacgtgttgttagcaatttcat 289
>gb|BX252587.1|BX252587 BX252587 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066H03 similar to UDP GLUCOSE 4 EPIMERASE,
mRNA sequence
Length = 701
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 399 atgaacattgatgatggacgtgttgttagcaatttcat 436
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 196 gggaacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
||||||||||| |||||||| ||| ||||||| ||||| ||||||||||
Sbjct: 573 gggaacccaggagaattcacaatgttggaactcgctgaagctgtgaaggag 623
>gb|BX253086.1|BX253086 BX253086 Pinus pinaster differenciating xylem adult Pinus
pinaster cDNA clone PP077G04 similar to UDP GLUCOSE 4
EPIMERASE, mRNA sequence
Length = 620
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 38 atgaacattgatgatggacgtgttgttagcaatttcat 75
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 196 gggaacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
||||||||||| |||||||| ||| ||||||| ||||| ||||||||||
Sbjct: 212 gggaacccaggagaattcacaatgttggaactcgctgaagctgtgaaggag 262
>gb|BX254029.1|BX254029 BX254029 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092D07 similar to UDP GLUCOSE 4 EPIMERASE,
mRNA sequence
Length = 691
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 238 atgaacattgatgatggacgtgttgttagcaatttcat 275
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 196 gggaacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
||||||||||| |||||||| ||| ||||||| ||||| ||||||||||
Sbjct: 412 gggaacccaggagaattcacaatgttggaactcgctgaagctgtgaaggag 462
>gb|AW758685.1|AW758685 NXNV_085_C06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_085_C06 5' similar to Arabidopsis thaliana
sequence At5g59290 dTDP-glucose 4-6-dehydratase - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 375
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 77 atgaacattgatgatggacgtgttgttagcaatttcat 114
>gb|AW784129.1|AW784129 NXNV_103_E03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_103_E03 5' similar to Arabidopsis thaliana
sequence At5g59290 dTDP-glucose 4-6-dehydratase - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 378
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 96 atgaacattgatgatggacgtgttgttagcaatttcat 133
>gb|BE123641.1|BE123641 NXNV_150_B11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_150_B11 5' similar to Arabidopsis thaliana
sequence At2g28760 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 310
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 238 atgaacattgatgatggacgtgttgttagcaatttcat 275
>gb|BE241113.1|BE241113 NXNV_173_A08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_173_A08 5' similar to Arabidopsis thaliana
sequence At5g59290 dTDP-glucose 4-6-dehydratase - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 526
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 223 atgaacattgatgatggacgtgttgttagcaatttcat 260
>gb|BG040600.1|BG040600 NXSI_113_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_113_A01 5' similar to Arabidopsis thaliana
sequence At5g59290 dTDP-glucose 4-6-dehydratase - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 464
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 234 atgaacattgatgatggacgtgttgttagcaatttcat 271
>gb|BG275186.1|BG275186 NXSI_140_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_H02 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 428
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 120 atgaacattgatgatggacgtgttgttagcaatttcat 157
>gb|BG275851.1|BG275851 NXSI_148_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_148_F04 5' similar to Arabidopsis thaliana
sequence At5g59290 dTDP-glucose 4-6-dehydratase - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 404
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 120 atgaacattgatgatggacgtgttgttagcaatttcat 157
>gb|BQ695559.1|BQ695559 NXPV_030_A03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_A03 5' similar to Arabidopsis
thaliana sequence At5g59290 dTDP-glucose 4-6-dehydratase
- like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 399
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 232 atgaacattgatgatggacgtgttgttagcaatttcat 269
>gb|BQ696029.1|BQ696029 NXPV_035_F01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_035_F01 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 536
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 232 atgaacattgatgatggacgtgttgttagcaatttcat 269
>gb|BQ697176.1|BQ697176 NXPV_050_D09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_050_D09 5' similar to Arabidopsis
thaliana sequence At5g59290 dTDP-glucose 4-6-dehydratase
- like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 437
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 232 atgaacattgatgatggacgtgttgttagcaatttcat 269
>gb|BQ698583.1|BQ698583 NXPV_071_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_F08 5' similar to Arabidopsis
thaliana sequence At5g59290 dTDP-glucose 4-6-dehydratase
- like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 516
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 232 atgaacattgatgatggacgtgttgttagcaatttcat 269
>gb|CD027267.1|CD027267 NXNV044A08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044A08 5' similar to Arabidopsis thaliana sequence
At2g28760 putative nucleotide-sugar dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 370
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 252 atgaacattgatgatggacgtgttgttagcaatttcat 289
>gb|CF389128.1|CF389128 RTDR2_13_D11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_D11_A021 5', mRNA
sequence
Length = 679
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 310 atgaacattgatgatggacgtgttgttagcaatttcat 347
>gb|CO158722.1|CO158722 FLD1_8_G04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_8_G04_A029 5', mRNA sequence
Length = 704
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 655 atgaacattgatgatggacgtgttgttagcaatttcat 692
>gb|CO166181.1|CO166181 FLD1_59_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_H09_A029 5', mRNA sequence
Length = 812
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 511 atgaacattgatgatggacgtgttgttagcaatttcat 548
>gb|CO200454.1|CO200454 GEO2_7_C04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_C04_A032 5', mRNA sequence
Length = 836
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 661 atgaacattgatgatggacgtgttgttagcaatttcat 698
>gb|CO370420.1|CO370420 RTK1_67_F07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_F07_A029 5', mRNA sequence
Length = 734
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 244 atgaacattgatgatggacgtgttgttagcaatttcat 281
>gb|CV036240.1|CV036240 RTNACL1_57_F03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_F03_A029 5', mRNA sequence
Length = 777
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 92 atgaacattgatgatggacgtgttgttagcaatttcat 129
>gb|CX646741.1|CX646741 COLD1_11_E12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_E12_A029 3', mRNA sequence
Length = 822
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 2 atgaacattgatgatggacgtgttgttagcaatttcat 39
>gb|CX646821.1|CX646821 COLD1_11_E12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_E12_A029 5', mRNA sequence
Length = 835
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 207 atgaacattgatgatggacgtgttgttagcaatttcat 244
>gb|CX650089.1|CX650089 COLD1_43_A08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A08_A029 5', mRNA sequence
Length = 784
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 740 atgaacattgatgatggacgtgttgttagcaatttcat 777
>gb|CX652868.1|CX652868 COLD1_62_B04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_B04_A029 3', mRNA sequence
Length = 793
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 107 atgaacattgatgatggacgtgttgttagcaatttcat 70
>gb|DR048632.1|DR048632 RTBOR1_10_E05.b1_A029 Roots plus added boron Pinus taeda cDNA
clone RTBOR1_10_E05_A029 3', mRNA sequence
Length = 868
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 61 atgaacattgatgatggacgtgttgttagcaatttcat 98
>gb|DR048707.1|DR048707 RTBOR1_10_E05.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E05_A029 5', mRNA sequence
Length = 774
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 479 atgaacattgatgatggacgtgttgttagcaatttcat 516
>gb|DR049907.1|DR049907 RTBOR1_19_H03.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_19_H03_A029 5', mRNA sequence
Length = 789
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 121 atgaacattgatgatggacgtgttgttagcaatttcat 158
>gb|DR061070.1|DR061070 RTNIT1_31_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_31_H03_A029 5', mRNA sequence
Length = 683
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 286 atgaacattgatgatggacgtgttgttagcaatttcat 323
>gb|DR069271.1|DR069271 RTDK1_6_C04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_C04_A029 3', mRNA sequence
Length = 858
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 137 atgaacattgatgatggacgtgttgttagcaatttcat 100
>gb|DR069574.1|DR069574 RTDK1_8_C04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_8_C04_A029 3', mRNA sequence
Length = 912
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 180 atgaacattgatgatggacgtgttgttagcaatttcat 143
>gb|DR071320.1|DR071320 RTDK1_19_C12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C12_A029 3', mRNA sequence
Length = 809
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 3 atgaacattgatgatggacgtgttgttagcaatttcat 40
>gb|DR094453.1|DR094453 STRR1_14_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_14_E02_A033 5', mRNA sequence
Length = 862
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 617 atgaacattgatgatggacgtgttgttagcaatttcat 654
>gb|DR688096.1|DR688096 EST1078180 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC049 3' end, mRNA sequence
Length = 544
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 53 atgaacattgatgatggacgtgttgttagcaatttcat 90
>gb|DT634473.1|DT634473 EST1149404 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG636 3' end, mRNA sequence
Length = 624
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||||||| |||||| |||||
Sbjct: 293 atgaacattgatgatggacgtgttgttagcaatttcat 330
>gb|BX255109.1|BX255109 BX255109 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP111A06 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 473
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 192 acctatgggccacgaatgaacattgacgatggccgtgttg 231
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 306 ttctgctatgtttctgatatggttgatggt 335
>gb|BX253417.1|BX253417 BX253417 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083C06a, mRNA sequence
Length = 317
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 159 acctatgggccacgaatgaacattgacgatggccgtgttg 198
>gb|BE644028.1|BE644028 NXCI_053_G03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_053_G03 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 60 acctatgggccacgaatgaacattgacgatggccgtgttg 99
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 174 ttctgctatgtttctgatatggttgatggt 203
>gb|BF186163.1|BF186163 NXCI_133_G06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_133_G06 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 60 acctatgggccacgaatgaacattgacgatggccgtgttg 99
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 174 ttctgctatgtttctgatatggttgatggt 203
>gb|BF518118.1|BF518118 NXSI_035_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda
cDNA clone NXSI_035_C02 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 338
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 39 acctatgggccacgaatgaacattgacgatggccgtgttg 78
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 153 ttctgctatgtttctgatatggttgatggt 182
>gb|BF610263.1|BF610263 NXSI_057_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda
cDNA clone NXSI_057_B05 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 338
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 39 acctatgggccacgaatgaacattgacgatggccgtgttg 78
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 153 ttctgctatgtttctgatatggttgatggt 182
>gb|BX676890.1|BX676890 BX676890 RN Pinus pinaster cDNA clone RN13E08, mRNA sequence
Length = 520
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 436 acctatgggccacgaatgaacattgacgatggccgtgttg 475
>gb|CO162913.1|CO162913 FLD1_38_G02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_G02_A029 3', mRNA sequence
Length = 870
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 258 acctatgggccacgaatgaacattgacgatggccgtgttg 297
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 283 aacactcctgatgacccccgccagaggaagccggacatcacaaaggc 329
|||||||| ||||| || ||| ||||||| || ||||||||||||||
Sbjct: 534 aacactccagatgatccacgcaagaggaaaccagacatcacaaaggc 580
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 372 ttctgctatgtttctgatatggttgatggt 401
>gb|CO166920.1|CO166920 FLD1_65_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_65_A12_A029 5', mRNA sequence
Length = 794
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 396 acctatgggccacgaatgaacattgacgatggccgtgttg 435
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 283 aacactcctgatgacccccgccagaggaagccggacatcacaaaggc 329
|||||||| ||||| || ||| ||||||| || ||||||||||||||
Sbjct: 672 aacactccagatgatccacgcaagaggaaaccagacatcacaaaggc 718
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 510 ttctgctatgtttctgatatggttgatggt 539
>gb|CO169434.1|CO169434 NDL1_7_B11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_B11_A029 3', mRNA sequence
Length = 729
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 136 acctatgggccacgaatgaacattgacgatggccgtgttg 175
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 283 aacactcctgatgacccccgccagaggaagccggacatcacaaaggc 329
|||||||| ||||| || ||| ||||||| || ||||||||||||||
Sbjct: 387 aacactccagatgatccacgcaagaggaaaccagacatcacaaaggc 433
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 250 ttctgctatgtttctgatatggttgatggt 279
>gb|CO169507.1|CO169507 NDL1_7_B11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_B11_A029 5', mRNA sequence
Length = 801
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 641 acctatgggccacgaatgaacattgacgatggccgtgttg 680
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 755 ttctgctatgtttctgatatggttgatggt 784
>gb|CV033876.1|CV033876 RTNACL1_37_D08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_37_D08_A029 3', mRNA sequence
Length = 855
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 100 acctatgggccacgaatgaacattgacgatggccgtgttg 139
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 283 aacactcctgatgacccccgccagaggaagccggacatcacaaaggc 329
|||||||| ||||| || ||| ||||||| || ||||||||||||||
Sbjct: 376 aacactccagatgatccacgcaagaggaaaccagacatcacaaaggc 422
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 214 ttctgctatgtttctgatatggttgatggt 243
>gb|CX650237.1|CX650237 COLD1_44_H04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_H04_A029 3', mRNA sequence
Length = 791
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 acctatgggcctaggatgaacattgatgatggccgtgttg 44
||||||||||| | ||||||||||| |||||||||||||
Sbjct: 172 acctatgggccacgaatgaacattgacgatggccgtgttg 211
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 283 aacactcctgatgacccccgccagaggaagccggacatcacaaaggc 329
|||||||| ||||| || ||| ||||||| || ||||||||||||||
Sbjct: 448 aacactccagatgatccacgcaagaggaaaccagacatcacaaaggc 494
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggt 150
|||||||||||| | |||||||||||||||
Sbjct: 286 ttctgctatgtttctgatatggttgatggt 315
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 217 atgctggaacttgctgagaatgtgaaggagtt 248
||||||||||||||||| ||||||||||||
Sbjct: 382 atgctggaacttgctgaagctgtgaaggagtt 413
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,955
Number of Sequences: 355925
Number of extensions: 79955
Number of successful extensions: 21820
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21682
Number of HSP's gapped (non-prelim): 138
length of query: 725
length of database: 217,277,237
effective HSP length: 19
effective length of query: 706
effective length of database: 210,514,662
effective search space: 148623351372
effective search space used: 148623351372
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)