BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724812.2.1
(804 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF470340.1|CF470340 RTDS1_18_D11.g1_A015 Drought-stresse... 42 0.035
gb|CV031446.1|CV031446 RTNACL1_1_D07.g1_A029 Roots plus add... 42 0.035
gb|CV134798.1|CV134798 EST846007 Sequencing ESTs from loblo... 42 0.035
gb|DR054231.1|DR054231 RTCA1_16_B10.b1_A029 Roots minus cal... 42 0.035
gb|DR094210.1|DR094210 STRR1_13_D08.b1_A033 Stem Response R... 42 0.035
gb|DT625926.1|DT625926 EST1157850 Sequencing ESTs from lobl... 42 0.035
gb|CF402964.1|CF402964 RTWW1_24_E04.b1_A015 Well-watered lo... 40 0.14
gb|CF403057.1|CF403057 RTWW1_24_E04.g1_A015 Well-watered lo... 40 0.14
gb|CF470928.1|CF470928 RTDS1_15_E03.g1_A015 Drought-stresse... 40 0.14
gb|CO159361.1|CO159361 FLD1_13_D05.b1_A029 Root flooded Pin... 40 0.14
gb|CO159443.1|CO159443 FLD1_13_D05.g1_A029 Root flooded Pin... 40 0.14
gb|CV033662.1|CV033662 RTNACL1_35_H05.g1_A029 Roots plus ad... 40 0.14
gb|DR059232.1|DR059232 RTNIT1_16_B07.g1_A029 Roots minus ni... 40 0.14
gb|DR068520.1|DR068520 RTDK1_1_G05.b1_A029 Roots, dark Pinu... 40 0.14
gb|DR068609.1|DR068609 RTDK1_1_G05.g1_A029 Roots, dark Pinu... 40 0.14
gb|DR387747.1|DR387747 RTHG1_23_H03.g2_A029 Roots plus adde... 40 0.14
>gb|CF470340.1|CF470340 RTDS1_18_D11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_D11_A015 5', mRNA sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.035
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 gcccttcctgtgggtggtccgcccg 30
|||||||||||||||| ||||||||
Sbjct: 120 gcccttcctgtgggtgctccgcccg 144
>gb|CV031446.1|CV031446 RTNACL1_1_D07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_D07_A029 5', mRNA sequence
Length = 734
Score = 42.1 bits (21), Expect = 0.035
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 145 tcacgcactgcgggtggaactccaccctggaga 177
|||| |||||||| |||||||||||| ||||||
Sbjct: 457 tcactcactgcggatggaactccaccttggaga 489
>gb|CV134798.1|CV134798 EST846007 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCF64 5' end, mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.035
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 gcccttcctgtgggtggtccgcccg 30
|||||||||||||||| ||||||||
Sbjct: 127 gcccttcctgtgggtgctccgcccg 151
>gb|DR054231.1|DR054231 RTCA1_16_B10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_B10_A029 3', mRNA sequence
Length = 855
Score = 42.1 bits (21), Expect = 0.035
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 145 tcacgcactgcgggtggaactccaccctggaga 177
|||| |||||||| |||||||||||| ||||||
Sbjct: 268 tcactcactgcggatggaactccaccttggaga 300
>gb|DR094210.1|DR094210 STRR1_13_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_D08_A033 3', mRNA sequence
Length = 775
Score = 42.1 bits (21), Expect = 0.035
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 145 tcacgcactgcgggtggaactccaccctggaga 177
|||| |||||||| |||||||||||| ||||||
Sbjct: 320 tcactcactgcggatggaactccaccttggaga 352
>gb|DT625926.1|DT625926 EST1157850 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA522 5' end, mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.035
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 gcccttcctgtgggtggtccgcccg 30
|||||||||||||||| ||||||||
Sbjct: 90 gcccttcctgtgggtgctccgcccg 114
>gb|CF402964.1|CF402964 RTWW1_24_E04.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_24_E04_A015 3', mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 224 cactgcgggtggaactccac 243
>gb|CF403057.1|CF403057 RTWW1_24_E04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_24_E04_A015 5', mRNA sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 465 cactgcgggtggaactccac 484
>gb|CF470928.1|CF470928 RTDS1_15_E03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_E03_A015 5', mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 511 cactgcgggtggaactccac 530
>gb|CO159361.1|CO159361 FLD1_13_D05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_13_D05_A029 3', mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 272 cactgcgggtggaactccac 253
>gb|CO159443.1|CO159443 FLD1_13_D05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_13_D05_A029 5', mRNA sequence
Length = 799
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 455 cactgcgggtggaactccac 436
>gb|CV033662.1|CV033662 RTNACL1_35_H05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_H05_A029 5', mRNA sequence
Length = 445
Score = 40.1 bits (20), Expect = 0.14
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 150 cactgcgggtggaactccaccctggaga 177
|||||||| ||||||||||| |||||||
Sbjct: 224 cactgcggttggaactccacgctggaga 251
>gb|DR059232.1|DR059232 RTNIT1_16_B07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_B07_A029 5', mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 517 cactgcgggtggaactccac 498
>gb|DR068520.1|DR068520 RTDK1_1_G05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_G05_A029 3', mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 140 cactgcgggtggaactccac 121
>gb|DR068609.1|DR068609 RTDK1_1_G05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_G05_A029 5', mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 415 cactgcgggtggaactccac 396
>gb|DR387747.1|DR387747 RTHG1_23_H03.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_H03_A029 5', mRNA sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 507 cactgcgggtggaactccac 488
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,290
Number of Sequences: 355925
Number of extensions: 59290
Number of successful extensions: 15331
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15308
Number of HSP's gapped (non-prelim): 23
length of query: 804
length of database: 217,277,237
effective HSP length: 19
effective length of query: 785
effective length of database: 210,514,662
effective search space: 165254009670
effective search space used: 165254009670
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)