BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716450.2.1
(2214 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF671814.1|CF671814 RTCNT1_59_A09.g1_A029 Root control P... 125 8e-027
gb|DR054530.1|DR054530 RTCA1_17_H12.g1_A029 Roots minus cal... 125 8e-027
gb|DR060759.1|DR060759 RTNIT1_29_G05.g1_A029 Roots minus ni... 117 2e-024
gb|DR694968.1|DR694968 EST1085061 Normalized pine embryo li... 117 2e-024
gb|DT639079.1|DT639079 EST1154010 Normalized pine embryo li... 117 2e-024
gb|CO361828.1|CO361828 NDL2_7_H02.b1_A029 Needles control 2... 113 3e-023
gb|BX249915.1|BX249915 BX249915 Pinus pinaster differenciat... 96 7e-018
gb|BF517276.1|BF517276 NXSI_012_E04_F NXSI (Nsf Xylem Side ... 92 1e-016
gb|DN614196.1|DN614196 EST967246 Subtracted pine embryo lib... 92 1e-016
gb|DR059811.1|DR059811 RTNIT1_20_A03.b1_A029 Roots minus ni... 92 1e-016
gb|DR681990.1|DR681990 EST1072065 Normalized pine embryo li... 92 1e-016
gb|DR744045.1|DR744045 RTCU1_19_H05.g1_A029 Roots plus adde... 92 1e-016
gb|AI813103.1|AI813103 23A11 Pine Lambda Zap Xylem library ... 88 2e-015
gb|CF477742.1|CF477742 RTWW3_9_D11.g1_A022 Well-watered lob... 88 2e-015
gb|CF669596.1|CF669596 RTCNT1_44_H12.g1_A029 Root control P... 88 2e-015
gb|CO197739.1|CO197739 GEO1_8_E12.g1_A029 Root gravitropism... 88 2e-015
gb|CO370536.1|CO370536 RTK1_68_B12.g1_A029 Roots minus pota... 88 2e-015
gb|CX650743.1|CX650743 COLD1_47_G02.g1_A029 Root cold Pinus... 88 2e-015
gb|CX712895.1|CX712895 RTPQ1_5_B12.g1_A032 Roots treated wi... 88 2e-015
gb|DR015333.1|DR015333 STRS1_2_G12.g1_A034 Shoot tip pitch ... 88 2e-015
gb|DR015344.1|DR015344 STRS1_2_H12.g1_A034 Shoot tip pitch ... 88 2e-015
gb|DR052142.1|DR052142 RTCA1_2_E04.g1_A029 Roots minus calc... 88 2e-015
gb|DR060422.1|DR060422 RTNIT1_27_E12.g1_A029 Roots minus ni... 88 2e-015
gb|DR167214.1|DR167214 RTPHOS1_17_A02.g1_A029 Roots minus p... 88 2e-015
gb|DR684409.1|DR684409 EST1074486 Normalized pine embryo li... 88 2e-015
gb|DR688238.1|DR688238 EST1078322 Normalized pine embryo li... 88 2e-015
gb|AW226087.1|AW226087 ST77B11 Pine TriplEx shoot tip libra... 86 7e-015
gb|DR019838.1|DR019838 STRS1_32_F06.g1_A034 Shoot tip pitch... 86 7e-015
gb|DR079081.1|DR079081 RTFEPL1_9_A09.b1_A029 Roots plus add... 86 7e-015
gb|AL750122.1|AL750122 AL750122 AS Pinus pinaster cDNA clon... 84 3e-014
gb|AL750198.1|AL750198 AL750198 AS Pinus pinaster cDNA clon... 84 3e-014
gb|BF777311.1|BF777311 NXSI_067_F07_F NXSI (Nsf Xylem Side ... 84 3e-014
gb|BF778506.1|BF778506 NXSI_085_E07_F NXSI (Nsf Xylem Side ... 84 3e-014
gb|CF391044.1|CF391044 RTDR3_3_H12.g1_A022 Loblolly pine ro... 84 3e-014
gb|DR169176.1|DR169176 RTPHOS1_30_C07.g1_A029 Roots minus p... 84 3e-014
gb|DR169352.1|DR169352 RTPHOS1_31_F11.g1_A029 Roots minus p... 84 3e-014
gb|DT634889.1|DT634889 EST1149820 Normalized pine embryo li... 80 4e-013
gb|BG275768.1|BG275768 NXSI_145_F12_F NXSI (Nsf Xylem Side ... 76 7e-012
gb|BQ698262.1|BQ698262 NXPV_065_E06_F NXPV (Nsf Xylem Plani... 76 7e-012
gb|BQ701944.1|BQ701944 NXSI_122_E02_F NXSI (Nsf Xylem Side ... 76 7e-012
gb|CO170478.1|CO170478 NDL1_14_C04.g1_A029 Needles control ... 76 7e-012
gb|DR054804.1|DR054804 RTCA1_19_E01.g1_A029 Roots minus cal... 76 7e-012
gb|BE644144.1|BE644144 NXCI_052_A10_F NXCI (Nsf Xylem Compr... 68 2e-009
gb|CF665092.1|CF665092 RTCNT1_13_H10.g1_A029 Root control P... 68 2e-009
gb|DN611239.1|DN611239 EST964289 Subtracted pine embryo lib... 68 2e-009
gb|DN613482.1|DN613482 EST966532 Subtracted pine embryo lib... 68 2e-009
gb|DR180323.1|DR180323 RTMNUT1_27_H03.g1_A029 Roots minus m... 68 2e-009
gb|DT628196.1|DT628196 EST1156945 Subtracted pine embryo li... 68 2e-009
gb|DT628840.1|DT628840 EST1155410 Subtracted pine embryo li... 68 2e-009
gb|CX713358.1|CX713358 RTPQ1_8_D04.g1_A032 Roots treated wi... 66 7e-009
gb|DR056290.1|DR056290 RTCA1_29_G06.b1_A029 Roots minus cal... 64 3e-008
gb|DR056754.1|DR056754 RTCA1_32_G06.b1_A029 Roots minus cal... 64 3e-008
gb|DR177850.1|DR177850 RTMNUT1_7_F08.g1_A029 Roots minus mi... 64 3e-008
gb|CF668484.1|CF668484 RTCNT1_36_F09.g1_A029 Root control P... 60 4e-007
gb|BF778318.1|BF778318 NXSI_080_G11_F NXSI (Nsf Xylem Side ... 58 2e-006
gb|CO363622.1|CO363622 RTK1_10_G06.g1_A029 Roots minus pota... 58 2e-006
gb|CD021598.1|CD021598 NXNV_156_A03_F Nsf Xylem Normal wood... 54 3e-005
gb|CF668401.1|CF668401 RTCNT1_36_F09.b1_A029 Root control P... 50 4e-004
gb|CO369401.1|CO369401 RTK1_46_H06.g1_A029 Roots minus pota... 50 4e-004
gb|DR060677.1|DR060677 RTNIT1_29_G05.b1_A029 Roots minus ni... 50 4e-004
gb|CF392235.1|CF392235 RTDR3_8_D07.g1_A022 Loblolly pine ro... 46 0.006
gb|CF479889.1|CF479889 RTWW3_12_B06.g1_A022 Well-watered lo... 46 0.006
gb|CF665643.1|CF665643 RTCNT1_17_G01.b1_A029 Root control P... 46 0.006
gb|CX651887.1|CX651887 COLD1_55_B02.g1_A029 Root cold Pinus... 46 0.006
gb|DR690906.1|DR690906 EST1080992 Normalized pine embryo li... 46 0.006
gb|DR693781.1|DR693781 EST1083871 Normalized pine embryo li... 46 0.006
gb|DN608835.1|DN608835 EST961885 Subtracted pine embryo lib... 44 0.024
gb|DN608914.1|DN608914 EST961964 Subtracted pine embryo lib... 44 0.024
gb|DN614337.1|DN614337 EST967387 Subtracted pine embryo lib... 44 0.024
gb|BG040128.1|BG040128 NXSI_106_F08_F NXSI (Nsf Xylem Side ... 42 0.096
gb|BQ634345.1|BQ634345 NXRV067_G08_F NXRV (Nsf Xylem Root w... 42 0.096
gb|BQ696011.1|BQ696011 NXPV_035_D08_F NXPV (Nsf Xylem Plani... 42 0.096
gb|BQ696432.1|BQ696432 NXPV_041_B01_F NXPV (Nsf Xylem Plani... 42 0.096
gb|CD015933.1|CD015933 NXCI_001_D07_F NXCI (Nsf Xylem Compr... 42 0.096
gb|CF392132.1|CF392132 RTDR3_8_D07.b1_A022 Loblolly pine ro... 42 0.096
gb|CF472876.1|CF472876 RTDS1_12_H12.b1_A015 Drought-stresse... 42 0.096
gb|CF474820.1|CF474820 RTWW2_8_G11.b1_A021 Well-watered lob... 42 0.096
gb|CO163412.1|CO163412 FLD1_41_B05.g1_A029 Root flooded Pin... 42 0.096
gb|CO200378.1|CO200378 GEO2_7_C07.b1_A032 Root gravitropism... 42 0.096
gb|CO200457.1|CO200457 GEO2_7_C07.g1_A032 Root gravitropism... 42 0.096
gb|CO361906.1|CO361906 NDL2_7_H02.g1_A029 Needles control 2... 42 0.096
gb|CO362282.1|CO362282 RTK1_2_C07.g1_A029 Roots minus potas... 42 0.096
gb|CX650671.1|CX650671 COLD1_47_G02.b1_A029 Root cold Pinus... 42 0.096
gb|CX713282.1|CX713282 RTPQ1_8_D04.b1_A032 Roots treated wi... 42 0.096
gb|DR014188.1|DR014188 HEAT1_24_A02.b1_A029 Root at 37 C fo... 42 0.096
gb|DR014263.1|DR014263 HEAT1_24_A02.g1_A029 Root at 37 C fo... 42 0.096
gb|DR024478.1|DR024478 STRS1_65_F02.b1_A034 Shoot tip pitch... 42 0.096
gb|DR050030.1|DR050030 RTBOR1_20_G09.g1_A029 Roots plus add... 42 0.096
gb|DR060379.1|DR060379 RTNIT1_27_A11.g1_A029 Roots minus ni... 42 0.096
gb|DR117322.1|DR117322 RTMG1_6_F10.b1_A029 Roots minus magn... 42 0.096
gb|DR118085.1|DR118085 RTMG1_11_B11.b1_A029 Roots minus mag... 42 0.096
gb|DR118162.1|DR118162 RTMG1_11_B11.g1_A029 Roots minus mag... 42 0.096
gb|DR180243.1|DR180243 RTMNUT1_27_H03.b1_A029 Roots minus m... 42 0.096
gb|DR746175.1|DR746175 RTCU1_35_E08.b1_A029 Roots plus adde... 42 0.096
gb|AW009985.1|AW009985 PC01H10 Pine TriplEx pollen cone lib... 40 0.38
gb|AW587597.1|AW587597 ST60D02 Pine TriplEx shoot tip libra... 40 0.38
gb|BG275761.1|BG275761 NXSI_145_F03_F NXSI (Nsf Xylem Side ... 40 0.38
gb|CD017696.1|CD017696 NXCI_114_A03_F NXCI (Nsf Xylem Compr... 40 0.38
gb|CO167937.1|CO167937 FLD1_72_F02.b1_A029 Root flooded Pin... 40 0.38
gb|CO168019.1|CO168019 FLD1_72_F02.g1_A029 Root flooded Pin... 40 0.38
gb|CV137491.1|CV137491 EST848700 Sequencing ESTs from loblo... 40 0.38
gb|DR017022.1|DR017022 STRS1_13_C10.g1_A034 Shoot tip pitch... 40 0.38
gb|DR079158.1|DR079158 RTFEPL1_9_A09.g1_A029 Roots plus add... 40 0.38
gb|DR099992.1|DR099992 STRR1_60_E08.g1_A033 Stem Response R... 40 0.38
gb|DR681989.1|DR681989 EST1072064 Normalized pine embryo li... 40 0.38
gb|DT626393.1|DT626393 EST1158317 Sequencing ESTs from lobl... 40 0.38
>gb|CF671814.1|CF671814 RTCNT1_59_A09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_A09_A029 5', mRNA sequence
Length = 785
Score = 125 bits (63), Expect = 8e-027
Identities = 258/323 (79%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 742 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 683
Query: 1333 gcaactccaattggctcatgcaagatctgtacatggtgtgggccatcagccggcacaatg 1392
||||||||||| |||||||| || | || ||| | || |||||||| || || |
Sbjct: 682 gcaactccaataggctcatgtaatgtttgacaatgataaggtccatcagctggaactgta 623
Query: 1393 agcccatggatcttatcagcccaaccagcatagtaacgcataagacgggccaccatgggt 1452
|| ||||| |||||||| ||||| || ||||||||||| | || || | |||| ||
Sbjct: 622 aggccatgtatcttatctgcccaccctgcatagtaacgaaatagccgcactgccattggc 563
Query: 1453 acttcaatctgggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagca 1512
||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 562 acttcaaccaaggctgcttgatcataaggcttcccattgtcccatgtttccaaggctgca 503
Query: 1513 agctcgtcattgtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctca 1572
| ||||||||| ||||| || | ||| ||||| ||||| || | |||| || ||||||
Sbjct: 502 atctcgtcattatgcttttcaagcaagtcagcgaaccggagcataatacatgatctctca 443
Query: 1573 taggcagtcatcttcggccatgg 1595
|| |||||||| |||||||||||
Sbjct: 442 taagcagtcattttcggccatgg 420
>gb|DR054530.1|DR054530 RTCA1_17_H12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_17_H12_A029 5', mRNA sequence
Length = 742
Score = 125 bits (63), Expect = 8e-027
Identities = 258/323 (79%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 505 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 446
Query: 1333 gcaactccaattggctcatgcaagatctgtacatggtgtgggccatcagccggcacaatg 1392
||||||||||| |||||||| || | || ||| | || |||||||| || || |
Sbjct: 445 gcaactccaataggctcatgtaatgtttgacaatgataaggtccatcagctggaactgta 386
Query: 1393 agcccatggatcttatcagcccaaccagcatagtaacgcataagacgggccaccatgggt 1452
|| ||||| |||||||| ||||| || ||||||||||| | || || | |||| ||
Sbjct: 385 aggccatgtatcttatctgcccaccctgcatagtaacgaaatagccgcactgccattggc 326
Query: 1453 acttcaatctgggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagca 1512
||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 325 acttcaaccaaggctgcttgatcataaggcttcccattgtcccatgtttccaaggctgca 266
Query: 1513 agctcgtcattgtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctca 1572
| ||||||||| ||||| || | ||| ||||| ||||| || | |||| || ||||||
Sbjct: 265 atctcgtcattatgcttttcaagcaagtcagcgaaccggagcataatacatgatctctca 206
Query: 1573 taggcagtcatcttcggccatgg 1595
|| |||||||| |||||||||||
Sbjct: 205 taagcagtcattttcggccatgg 183
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 680 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 621
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 620 gacattcagaactcctggaggcagtccagcctcatg 585
>gb|DR060759.1|DR060759 RTNIT1_29_G05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_G05_A029 5', mRNA sequence
Length = 663
Score = 117 bits (59), Expect = 2e-024
Identities = 257/323 (79%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 478 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 419
Query: 1333 gcaactccaattggctcatgcaagatctgtacatggtgtgggccatcagccggcacaatg 1392
||||||||||| |||||||| || | || ||| | || |||||||| || || |
Sbjct: 418 gcaactccaataggctcatgtaatgtttgacaatgataaggtccatcagctggaactgta 359
Query: 1393 agcccatggatcttatcagcccaaccagcatagtaacgcataagacgggccaccatgggt 1452
|| ||||| |||||||| ||||| || ||||||||||| | || || | |||| ||
Sbjct: 358 aggccatgtatcttatctgcccaccctgcatagtaacgaaatagccgcactgccattggc 299
Query: 1453 acttcaatctgggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagca 1512
||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 298 acttcaaccaaggctgcttgatcataaggcttcccattgtcccatgtttccaaggctgca 239
Query: 1513 agctcgtcattgtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctca 1572
| ||| ||||| ||||| || | ||| ||||| ||||| || | |||| || ||||||
Sbjct: 238 atctcatcattatgcttttcaagcaagtcagcgaaccggagcataatacatgatctctca 179
Query: 1573 taggcagtcatcttcggccatgg 1595
|| |||||||| |||||||||||
Sbjct: 178 taagcagtcattttcggccatgg 156
>gb|DR694968.1|DR694968 EST1085061 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEI94 3' end, mRNA sequence
Length = 830
Score = 117 bits (59), Expect = 2e-024
Identities = 257/323 (79%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 756 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 697
Query: 1333 gcaactccaattggctcatgcaagatctgtacatggtgtgggccatcagccggcacaatg 1392
||||||||||| |||||||| || | || ||| | || |||||||| || || |
Sbjct: 696 gcaactccaataggctcatgtaatgtttgacaatgataaggtccatcagctggaactgta 637
Query: 1393 agcccatggatcttatcagcccaaccagcatagtaacgcataagacgggccaccatgggt 1452
|| ||||| |||||||| ||||| || ||||||||||| | || || | |||| ||
Sbjct: 636 aggccatgtatcttatctgcccaccctgcatagtaacgaaatagccgcactgccattggc 577
Query: 1453 acttcaatctgggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagca 1512
||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 576 acttcaaccaaggctgcttgatcataaggcttcccattgtcccatgtttccaaggctgca 517
Query: 1513 agctcgtcattgtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctca 1572
| ||| ||||| ||||| || | ||| ||||| ||||| || | |||| || ||||||
Sbjct: 516 atctcatcattatgcttttcaagcaagtcagcgaaccggagcataatacatgatctctca 457
Query: 1573 taggcagtcatcttcggccatgg 1595
|| |||||||| |||||||||||
Sbjct: 456 taagcagtcattttcggccatgg 434
>gb|DT639079.1|DT639079 EST1154010 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHM79 3' end, mRNA sequence
Length = 852
Score = 117 bits (59), Expect = 2e-024
Identities = 257/323 (79%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 764 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 705
Query: 1333 gcaactccaattggctcatgcaagatctgtacatggtgtgggccatcagccggcacaatg 1392
||||||||||| |||||||| || | || ||| | || |||||||| || || |
Sbjct: 704 gcaactccaataggctcatgtaatgtttgacaatgataaggtccatcagctggaactgta 645
Query: 1393 agcccatggatcttatcagcccaaccagcatagtaacgcataagacgggccaccatgggt 1452
|| ||||| |||||||| ||||| || ||||||||||| | || || | |||| ||
Sbjct: 644 aggccatgtatcttatctgcccaccctgcatagtaacgaaatagccgcactgccattggc 585
Query: 1453 acttcaatctgggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagca 1512
||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 584 acttcaaccaaggctgcttgatcataaggcttcccattgtcccatgtttccaaggctgca 525
Query: 1513 agctcgtcattgtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctca 1572
| ||| ||||| ||||| || | ||| ||||| ||||| || | |||| || ||||||
Sbjct: 524 atctcatcattatgcttttcaagcaagtcagcgaaccggagcataatacatgatctctca 465
Query: 1573 taggcagtcatcttcggccatgg 1595
|| |||||||| |||||||||||
Sbjct: 464 taagcagtcattttcggccatgg 442
>gb|CO361828.1|CO361828 NDL2_7_H02.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_7_H02_A029 3', mRNA sequence
Length = 780
Score = 113 bits (57), Expect = 3e-023
Identities = 252/317 (79%)
Strand = Plus / Plus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 462 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 521
Query: 1333 gcaactccaattggctcatgcaagatctgtacatggtgtgggccatcagccggcacaatg 1392
||||||||||| |||||||| || | || ||| | || |||||||| || || |
Sbjct: 522 gcaactccaataggctcatgtaatgtttgacaatgataaggtccatcagctggaactgta 581
Query: 1393 agcccatggatcttatcagcccaaccagcatagtaacgcataagacgggccaccatgggt 1452
|| ||||| |||||||| ||||| || ||||||||||| | || || | |||| ||
Sbjct: 582 aggccatgtatcttatctgcccaccctgcatagtaacgaaatagccgcactgccattggc 641
Query: 1453 acttcaatctgggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagca 1512
||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||| || |||
Sbjct: 642 acttcaaccaaggctgcttgatcataaggcttcccattgtcccatgtttccaaggctgca 701
Query: 1513 agctcgtcattgtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctca 1572
| ||||||||| ||||| || | ||| ||||| ||||| || | |||| || ||||||
Sbjct: 702 atctcgtcattatgcttttcaagcaagtcagcgaaccggagcataatacatgatctctca 761
Query: 1573 taggcagtcatcttcgg 1589
|| |||||||| |||||
Sbjct: 762 taagcagtcattttcgg 778
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 51 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 110
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 111 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 170
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 171 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 230
Query: 1042 tt 1043
||
Sbjct: 231 tt 232
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Plus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 287 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 346
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 347 gacattcagaactcctggaggcagtccagcctcatg 382
>gb|BX249915.1|BX249915 BX249915 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030C04, mRNA sequence
Length = 675
Score = 95.6 bits (48), Expect = 7e-018
Identities = 111/132 (84%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||||||||| |||||||| ||||||||||||||||| || |||| |||||| ||
Sbjct: 519 ggctgcttgctcataaggcttcccattgtcccatgtctccaaggctgcaatctcgtcgtt 460
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 459 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 400
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 399 tttcggccatgg 388
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 1312 ttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 671 ttccaagggatgatttgacctgcaactccaataggctcatg 631
>gb|BF517276.1|BF517276 NXSI_012_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_012_E04 5' similar to Arabidopsis thaliana
sequence At3g48000 aldehyde dehydrogenase (NAD+)-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 495
Score = 91.7 bits (46), Expect = 1e-016
Identities = 133/162 (82%)
Strand = Plus / Minus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 433 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 374
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatcgtccattatgatgaaagggga 1001
| |||| |||||||||||||| ||||||||||||||||| || || ||| || || ||
Sbjct: 373 agagtgtgcaagctcaacagcctggtcaacatcagcatcttcacatacgataaatggaga 314
Query: 1002 cttgcctcctaactccagtgtcactgtcttaaggttgctctt 1043
||| ||||| | |||| ||||||| |||||||||||||||
Sbjct: 313 cttccctccaagttccaatgtcactcgcttaaggttgctctt 272
>gb|DN614196.1|DN614196 EST967246 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC123, mRNA sequence
Length = 367
Score = 91.7 bits (46), Expect = 1e-016
Identities = 133/162 (82%)
Strand = Plus / Plus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 190 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 249
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatcgtccattatgatgaaagggga 1001
| |||| |||||||||||||| ||||||||||||||||| || || ||| || || ||
Sbjct: 250 agagtgtgcaagctcaacagcctggtcaacatcagcatcttcacatacgataaatggaga 309
Query: 1002 cttgcctcctaactccagtgtcactgtcttaaggttgctctt 1043
||| ||||| | |||| ||||||| |||||||||||||||
Sbjct: 310 cttccctccaagttccaatgtcactcgcttaaggttgctctt 351
>gb|DR059811.1|DR059811 RTNIT1_20_A03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_20_A03_A029 3', mRNA sequence
Length = 747
Score = 91.7 bits (46), Expect = 1e-016
Identities = 133/162 (82%)
Strand = Plus / Plus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 494 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 553
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatcgtccattatgatgaaagggga 1001
| |||| |||||||||||||| ||||||||||||||||| || || ||| || || ||
Sbjct: 554 agagtgtgcaagctcaacagcctggtcaacatcagcatcttcacatacgataaatggaga 613
Query: 1002 cttgcctcctaactccagtgtcactgtcttaaggttgctctt 1043
||| ||||| | |||| ||||||| |||||||||||||||
Sbjct: 614 cttccctccaagttccaatgtcactcgcttaaggttgctctt 655
>gb|DR681990.1|DR681990 EST1072065 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA487 3' end, mRNA sequence
Length = 730
Score = 91.7 bits (46), Expect = 1e-016
Identities = 133/162 (82%)
Strand = Plus / Minus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 180 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 121
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatcgtccattatgatgaaagggga 1001
| |||| |||||||||||||| ||||||||||||||||| || || ||| || || ||
Sbjct: 120 agagtgtgcaagctcaacagcctggtcaacatcagcatcttcacatacgataaatggaga 61
Query: 1002 cttgcctcctaactccagtgtcactgtcttaaggttgctctt 1043
||| ||||| | |||| ||||||| |||||||||||||||
Sbjct: 60 cttccctccaagttccaatgtcactcgcttaaggttgctctt 19
>gb|DR744045.1|DR744045 RTCU1_19_H05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_H05_A029 5', mRNA sequence
Length = 768
Score = 91.7 bits (46), Expect = 1e-016
Identities = 133/162 (82%)
Strand = Plus / Minus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 275 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 216
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatcgtccattatgatgaaagggga 1001
| |||| |||||||||||||| ||||||||||||||||| || || ||| || || ||
Sbjct: 215 agagtgtgcaagctcaacagcctggtcaacatcagcatcttcacatacgataaatggaga 156
Query: 1002 cttgcctcctaactccagtgtcactgtcttaaggttgctctt 1043
||| ||||| | |||| ||||||| |||||||||||||||
Sbjct: 155 cttccctccaagttccaatgtcactcgcttaaggttgctctt 114
>gb|AI813103.1|AI813103 23A11 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 501
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 350 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 291
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 290 gcaactccaataggctcatg 271
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 159 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 100
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 99 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 40
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 39 tttcggccatgg 28
>gb|CF477742.1|CF477742 RTWW3_9_D11.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_9_D11_A022 5', mRNA sequence
Length = 747
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 690 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 631
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 630 gcaactccaataggctcatg 611
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 499 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 440
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 439 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 380
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 379 tttcggccatgg 368
>gb|CF669596.1|CF669596 RTCNT1_44_H12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_H12_A029 5', mRNA sequence
Length = 754
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 661 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 602
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 601 gcaactccaataggctcatg 582
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 470 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 411
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 410 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 351
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 350 tttcggccatgg 339
>gb|CO197739.1|CO197739 GEO1_8_E12.g1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_8_E12_A029 5', mRNA sequence
Length = 728
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 646 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 587
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 586 gcaactccaataggctcatg 567
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 455 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 396
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 395 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 336
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 335 tttcggccatgg 324
>gb|CO370536.1|CO370536 RTK1_68_B12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_B12_A029 5', mRNA sequence
Length = 703
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 663 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 604
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 603 gcaactccaataggctcatg 584
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 472 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 413
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 412 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 353
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 352 tttcggccatgg 341
>gb|CX650743.1|CX650743 COLD1_47_G02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_G02_A029 5', mRNA sequence
Length = 817
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 169 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 110
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 109 gcaactccaataggctcatg 90
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 580 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 521
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 520 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 461
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 460 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 401
Query: 1042 tt 1043
||
Sbjct: 400 tt 399
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 662 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 618
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 344 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 285
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 284 gacattcagaactcctggaggcagtccagcctcatg 249
>gb|CX712895.1|CX712895 RTPQ1_5_B12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_B12_A032 5', mRNA sequence
Length = 785
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 352 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 293
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 292 gcaactccaataggctcatg 273
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 161 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 102
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 101 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 42
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 41 tttcggccatgg 30
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 763 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 704
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 703 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 644
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 643 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 584
Query: 1042 tt 1043
||
Sbjct: 583 tt 582
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 527 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 468
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 467 gacattcagaactcctggaggcagtccagcctcatg 432
>gb|DR015333.1|DR015333 STRS1_2_G12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_G12_A034 5', mRNA sequence
Length = 682
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 135 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 76
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 75 gcaactccaataggctcatg 56
Score = 54.0 bits (27), Expect = 3e-005
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 546 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 487
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatc 980
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 486 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatc 428
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 628 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 584
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 310 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 251
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 250 gacattcagaactcctggaggcagtccagcctcatg 215
>gb|DR015344.1|DR015344 STRS1_2_H12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_H12_A034 5', mRNA sequence
Length = 838
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 183 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 124
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 123 gcaactccaataggctcatg 104
Score = 54.0 bits (27), Expect = 3e-005
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 594 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 535
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatc 980
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 534 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatc 476
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 676 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 632
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 358 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 299
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 298 gacattcagaactcctggaggcagtccagcctcatg 263
>gb|DR052142.1|DR052142 RTCA1_2_E04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_E04_A029 5', mRNA sequence
Length = 821
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 725 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 666
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 665 gcaactccaataggctcatg 646
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 534 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 475
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 474 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 415
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 414 tttcggccatgg 403
>gb|DR060422.1|DR060422 RTNIT1_27_E12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_E12_A029 5', mRNA sequence
Length = 739
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 187 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 128
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 127 gcaactccaataggctcatg 108
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 598 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 539
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 538 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 479
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 478 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 419
Query: 1042 tt 1043
||
Sbjct: 418 tt 417
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 680 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 636
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 362 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 303
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 302 gacattcagaactcctggaggcagtccagcctcatg 267
>gb|DR167214.1|DR167214 RTPHOS1_17_A02.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_17_A02_A029 5', mRNA sequence
Length = 839
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 725 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 666
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 665 gcaactccaataggctcatg 646
Score = 87.7 bits (44), Expect = 2e-015
Identities = 110/132 (83%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcatt 1523
||||||||| ||||| |||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct: 534 ggctgcttggtcataaggcttcccattgtcccatgtttccaaggctgcaatctcgtcatt 475
Query: 1524 gtgcttctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcat 1583
||||| || | ||| ||||| ||||| || | |||| || |||||||| ||||||||
Sbjct: 474 atgcttttcaagcaagtcagcgaaccggagcataatacatgatctctcataagcagtcat 415
Query: 1584 cttcggccatgg 1595
|||||||||||
Sbjct: 414 tttcggccatgg 403
>gb|DR684409.1|DR684409 EST1074486 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAS32 3' end, mRNA sequence
Length = 820
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 214 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 155
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 154 gcaactccaataggctcatg 135
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 625 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 566
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 565 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 506
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 505 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 446
Query: 1042 tt 1043
||
Sbjct: 445 tt 444
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 707 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 663
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 389 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 330
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 329 gacattcagaactcctggaggcagtccagcctcatg 294
>gb|DR688238.1|DR688238 EST1078322 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC369 3' end, mRNA sequence
Length = 461
Score = 87.7 bits (44), Expect = 2e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 245 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 186
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| ||||||||
Sbjct: 185 gcaactccaataggctcatg 166
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1464 ggctgcttgctcatatggcttcccgttgtcccatgtctccaa 1505
||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 54 ggctgcttggtcataaggcttcccattgtcccatgtttccaa 13
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 420 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 361
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 360 gacattcagaactcctggaggcagtccagcctcatg 325
>gb|AW226087.1|AW226087 ST77B11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST77B11, mRNA sequence
Length = 486
Score = 85.7 bits (43), Expect = 7e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 150 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 91
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatc 980
| |||| |||||||||||||| |||||||||||||||||
Sbjct: 90 agagtgtgcaagctcaacagcctggtcaacatcagcatc 52
>gb|DR019838.1|DR019838 STRS1_32_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_32_F06_A034 5', mRNA sequence
Length = 796
Score = 85.7 bits (43), Expect = 7e-015
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 150 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 91
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatc 980
| |||| |||||||||||||| |||||||||||||||||
Sbjct: 90 agagtgtgcaagctcaacagcctggtcaacatcagcatc 52
>gb|DR079081.1|DR079081 RTFEPL1_9_A09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_A09_A029 3', mRNA sequence
Length = 911
Score = 85.7 bits (43), Expect = 7e-015
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 738 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 797
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatc 980
| |||| |||||||||||||| |||||||||||||||||
Sbjct: 798 agagtgtgcaagctcaacagcctggtcaacatcagcatc 836
>gb|AL750122.1|AL750122 AL750122 AS Pinus pinaster cDNA clone AS06A06 similar to ALDEHYDE
DEHYDROGENASE, mRNA sequence
Length = 677
Score = 83.8 bits (42), Expect = 3e-014
Identities = 132/162 (81%)
Strand = Plus / Minus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 621 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 562
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatcgtccattatgatgaaagggga 1001
| ||| |||||||||||||| ||||||||||||||||| || || ||| || || ||
Sbjct: 561 agtgtgtgcaagctcaacagcctggtcaacatcagcatcttcacatacgataaatggaga 502
Query: 1002 cttgcctcctaactccagtgtcactgtcttaaggttgctctt 1043
||| ||||| | |||| ||||||| |||||||||||||||
Sbjct: 501 cttccctccaagttccaatgtcactcgcttaaggttgctctt 460
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 197 ggaaaattccaaggaatgatttgacctgcaactccaataggttcatg 151
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1470 ttgctcatatggcttcccgttgtcccatgt 1499
||||||||| |||||||| |||||||||||
Sbjct: 33 ttgctcataaggcttcccattgtcccatgt 4
>gb|AL750198.1|AL750198 AL750198 AS Pinus pinaster cDNA clone AS06H02 similar to ALDEHYDE
DEHYDROGENASE, mRNA sequence
Length = 673
Score = 83.8 bits (42), Expect = 3e-014
Identities = 132/162 (81%)
Strand = Plus / Minus
Query: 882 ctcatgtacaaacgtgcgagatccagcgcagcagcattgtccctggttaaagaacagggc 941
|||||||||| | || || ||| |||| ||||||||||| |||||||| || || || ||
Sbjct: 621 ctcatgtacataggttcgtgatgcagcacagcagcattgaccctggttgaaaaatagagc 562
Query: 942 aaagtgcgcaagctcaacagcatggtcaacatcagcatcgtccattatgatgaaagggga 1001
| ||| |||||||||||||| ||||||||||||||||| || || ||| || || ||
Sbjct: 561 agtgtgtgcaagctcaacagcctggtcaacatcagcatcttcacatacgataaatggaga 502
Query: 1002 cttgcctcctaactccagtgtcactgtcttaaggttgctctt 1043
||| ||||| | |||| ||||||| |||||||||||||||
Sbjct: 501 cttccctccaagttccaatgtcactcgcttaaggttgctctt 460
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 197 ggaaaattccaaggaatgatttgacctgcaactccaataggttcatg 151
Score = 44.1 bits (22), Expect = 0.024
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1470 ttgctcatatggcttcccgttgtcccatgt 1499
||||||||| |||||||| |||||||||||
Sbjct: 33 ttgctcataaggcttcccattgtcccatgt 4
>gb|BF777311.1|BF777311 NXSI_067_F07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_067_F07 5' similar to Arabidopsis thaliana
sequence At3g48000 aldehyde dehydrogenase (NAD+)-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 530
Score = 83.8 bits (42), Expect = 3e-014
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 905 cagcgcagcagcattgtccctggttaaagaacagggcaaagtgcgcaagctcaacagcat 964
|||| ||||||||||| |||||||| || || || ||| |||| |||||||||||||| |
Sbjct: 410 cagcacagcagcattgaccctggttgaaaaatagagcagagtgtgcaagctcaacagcct 351
Query: 965 ggtcaacatcagcatcgtccattatgatgaaaggggacttgcctcctaactccagtgtca 1024
|||||||||||||||| || | ||| || || ||||| ||||| | |||| |||||
Sbjct: 350 ggtcaacatcagcatcttcannnacgataaatggagacttccctccaagttccaatgtca 291
Query: 1025 ctgtcttaaggttgctctt 1043
|| |||||||||||||||
Sbjct: 290 ctcgcttaaggttgctctt 272
>gb|BF778506.1|BF778506 NXSI_085_E07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_E07 5' similar to Arabidopsis thaliana
sequence At1g23800 putative aldehyde dehydrogenase NAD+
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 545
Score = 83.8 bits (42), Expect = 3e-014
Identities = 147/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 207 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 148
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 147 ccctgattgaaaaataatgcaaagtgagcgagctccacagcttgatcgacatcagcatct 88
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 87 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 28
Query: 1042 tt 1043
||
Sbjct: 27 tt 26
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 289 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 245
>gb|CF391044.1|CF391044 RTDR3_3_H12.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_3_H12_A022 5', mRNA sequence
Length = 473
Score = 83.8 bits (42), Expect = 3e-014
Identities = 147/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 236 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 177
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 176 ccctgattgaaaaataatgcaaagtgagcgagctccacagcttgatcgacatcagcatct 117
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 116 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 57
Query: 1042 tt 1043
||
Sbjct: 56 tt 55
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 318 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 274
>gb|DR169176.1|DR169176 RTPHOS1_30_C07.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_30_C07_A029 5', mRNA sequence
Length = 760
Score = 83.8 bits (42), Expect = 3e-014
Identities = 147/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 323 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 264
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 263 ccctgattgaaaaataatgcaaagtgagcgagctccacagcttgatcgacatcagcatct 204
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 203 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 144
Query: 1042 tt 1043
||
Sbjct: 143 tt 142
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 405 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 361
>gb|DR169352.1|DR169352 RTPHOS1_31_F11.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_31_F11_A029 5', mRNA sequence
Length = 666
Score = 83.8 bits (42), Expect = 3e-014
Identities = 147/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 205 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 146
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 145 ccctgattgaaaaataatgcaaagtgagcgagctccacagcttgatcgacatcagcatct 86
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 85 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 26
Query: 1042 tt 1043
||
Sbjct: 25 tt 24
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 287 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 243
>gb|DT634889.1|DT634889 EST1149820 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGA87 3' end, mRNA sequence
Length = 430
Score = 79.8 bits (40), Expect = 4e-013
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1273 gcagggccaactttccaggcaaacatcagaagaggaaagttccatgggatgatctgacct 1332
||||| ||||||||||| |||||||| || || ||||| ||||| |||||||| ||||||
Sbjct: 192 gcaggaccaactttccaagcaaacataagtagtggaaaattccaagggatgatttgacct 133
Query: 1333 gcaactccaattggctcatg 1352
||||||||||| || |||||
Sbjct: 132 gcaactccaatagggtcatg 113
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 367 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 308
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 307 gacattcagaactcctggaggcagtccagcctcatg 272
>gb|BG275768.1|BG275768 NXSI_145_F12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_F12 5' similar to Arabidopsis thaliana
sequence At1g23800 putative aldehyde dehydrogenase NAD+
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 547
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 207 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 148
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 147 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 88
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 87 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 28
Query: 1042 tt 1043
||
Sbjct: 27 tt 26
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 289 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 245
>gb|BQ698262.1|BQ698262 NXPV_065_E06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_065_E06 5' similar to Arabidopsis
thaliana sequence At1g23800 putative aldehyde
dehydrogenase NAD+ see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 467
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 278 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 219
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 218 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 159
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 158 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 99
Query: 1042 tt 1043
||
Sbjct: 98 tt 97
>gb|BQ701944.1|BQ701944 NXSI_122_E02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_E02 5' similar to Arabidopsis thaliana
sequence At1g23800 putative aldehyde dehydrogenase NAD+
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 402
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 355 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 296
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 295 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 236
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 235 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 176
Query: 1042 tt 1043
||
Sbjct: 175 tt 174
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 119 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 60
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 59 gacattcagaactcctggaggcagtccagcctcatg 24
>gb|CO170478.1|CO170478 NDL1_14_C04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_14_C04_A029 5', mRNA sequence
Length = 742
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 353 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 294
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 293 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 234
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 233 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 174
Query: 1042 tt 1043
||
Sbjct: 173 tt 172
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 435 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 391
Score = 40.1 bits (20), Expect = 0.38
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1098 cttatcaacatccatgtgactagcaagagcagcaccagcagtagggccaaaaccagaaac 1157
|||||||| ||||||||| || |||| ||||| || ||||| || ||| | || ||||
Sbjct: 117 cttatcaatatccatgtgtcttgcaattgcagctcccgcagttggaccatatcctgaaat 58
Query: 1158 gacgttcacaacaccctcaggcagtccagcctcatg 1193
||| |||| ||| || ||||||||||||||||||
Sbjct: 57 gacattcagaactcctggaggcagtccagcctcatg 22
>gb|DR054804.1|DR054804 RTCA1_19_E01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_E01_A029 5', mRNA sequence
Length = 781
Score = 75.8 bits (38), Expect = 7e-012
Identities = 146/182 (80%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 317 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 258
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 257 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 198
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 197 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 138
Query: 1042 tt 1043
||
Sbjct: 137 tt 136
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 399 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 355
>gb|BE644144.1|BE644144 NXCI_052_A10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_052_A10 5' similar to Arabidopsis
thaliana sequence At1g23800 putative aldehyde
dehydrogenase NAD+ see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 235
Score = 67.9 bits (34), Expect = 2e-009
Identities = 145/182 (79%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 187 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 128
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 127 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 68
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 67 ttgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 8
Query: 1042 tt 1043
||
Sbjct: 7 tt 6
>gb|CF665092.1|CF665092 RTCNT1_13_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_13_H10_A029 5', mRNA sequence
Length = 683
Score = 67.9 bits (34), Expect = 2e-009
Identities = 112/138 (81%)
Strand = Plus / Minus
Query: 1470 ttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcattgtgctt 1529
||||||||| |||||||| ||||||||||| |||| ||| |||| ||| ||||| |||||
Sbjct: 443 ttgctcataaggcttcccattgtcccatgtttccagagctgcaatctcatcattatgctt 384
Query: 1530 ctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcatcttcgg 1589
|| | ||| ||||||||||| | |||| || || ||||| |||||||| || ||
Sbjct: 383 ttcaagcaagtcagcaaaccggtacataatacacgatctttcataagcagtcatttttgg 324
Query: 1590 ccatggcccttcatcaaa 1607
|||||| |||||||||||
Sbjct: 323 ccatgggccttcatcaaa 306
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 607 ggaaaattccaaggaatgatttgacctgcaactccaataggttcatg 561
>gb|DN611239.1|DN611239 EST964289 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAZ52, mRNA sequence
Length = 718
Score = 67.9 bits (34), Expect = 2e-009
Identities = 112/138 (81%)
Strand = Plus / Minus
Query: 1470 ttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcattgtgctt 1529
||||||||| |||||||| ||||||||||| |||| ||| |||| ||| ||||| |||||
Sbjct: 539 ttgctcataaggcttcccattgtcccatgtttccagagctgcaatctcatcattatgctt 480
Query: 1530 ctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcatcttcgg 1589
|| | ||| ||||||||||| | |||| || || ||||| |||||||| || ||
Sbjct: 479 ttcaagcaagtcagcaaaccggtacataatacacgatctttcataagcagtcatttttgg 420
Query: 1590 ccatggcccttcatcaaa 1607
|||||| |||||||||||
Sbjct: 419 ccatgggccttcatcaaa 402
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 703 ggaaaattccaaggaatgatttgacctgcaactccaataggttcatg 657
>gb|DN613482.1|DN613482 EST966532 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABS79, mRNA sequence
Length = 811
Score = 67.9 bits (34), Expect = 2e-009
Identities = 112/138 (81%)
Strand = Plus / Minus
Query: 1470 ttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcattgtgctt 1529
||||||||| |||||||| ||||||||||| |||| ||| |||| ||| ||||| |||||
Sbjct: 524 ttgctcataaggcttcccattgtcccatgtttccagagctgcaatctcatcattatgctt 465
Query: 1530 ctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcatcttcgg 1589
|| | ||| ||||||||||| | |||| || || ||||| |||||||| || ||
Sbjct: 464 ttcaagcaagtcagcaaaccggtacataatacacgatctttcataagcagtcatttttgg 405
Query: 1590 ccatggcccttcatcaaa 1607
|||||| |||||||||||
Sbjct: 404 ccatgggccttcatcaaa 387
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 688 ggaaaattccaaggaatgatttgacctgcaactccaataggttcatg 642
>gb|DR180323.1|DR180323 RTMNUT1_27_H03.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_H03_A029 5', mRNA sequence
Length = 844
Score = 67.9 bits (34), Expect = 2e-009
Identities = 145/182 (79%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 242 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 183
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 182 ccctgattgaaaaataatgcaaagtgagcgagctccacggcttgatcgacatcagcatct 123
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 122 ttgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 63
Query: 1042 tt 1043
||
Sbjct: 62 tt 61
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 324 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 280
>gb|DT628196.1|DT628196 EST1156945 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCV34 5' end, mRNA sequence
Length = 936
Score = 67.9 bits (34), Expect = 2e-009
Identities = 112/138 (81%)
Strand = Plus / Plus
Query: 1470 ttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcattgtgctt 1529
||||||||| |||||||| ||||||||||| |||| ||| |||| ||| ||||| |||||
Sbjct: 425 ttgctcataaggcttcccattgtcccatgtttccagagctgcaatctcatcattatgctt 484
Query: 1530 ctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcatcttcgg 1589
|| | ||| ||||||||||| | |||| || || ||||| |||||||| || ||
Sbjct: 485 ttcaagcaagtcagcaaaccggtacataatacacgatctttcataagcagtcatttttgg 544
Query: 1590 ccatggcccttcatcaaa 1607
|||||| |||||||||||
Sbjct: 545 ccatgggccttcatcaaa 562
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 261 ggaaaattccaaggaatgatttgacctgcaactccaataggttcatg 307
>gb|DT628840.1|DT628840 EST1155410 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD257 5' end, mRNA sequence
Length = 861
Score = 67.9 bits (34), Expect = 2e-009
Identities = 112/138 (81%)
Strand = Plus / Plus
Query: 1470 ttgctcatatggcttcccgttgtcccatgtctccaaagcagcaagctcgtcattgtgctt 1529
||||||||| |||||||| ||||||||||| |||| ||| |||| ||| ||||| |||||
Sbjct: 411 ttgctcataaggcttcccattgtcccatgtttccagagctgcaatctcatcattatgctt 470
Query: 1530 ctctatcaaatcagcaaaccgcagtaggatacgggacctctcataggcagtcatcttcgg 1589
|| | ||| ||||||||||| | |||| || || ||||| |||||||| || ||
Sbjct: 471 ttcaagcaagtcagcaaaccggtacataatacacgatctttcataagcagtcatttttgg 530
Query: 1590 ccatggcccttcatcaaa 1607
|||||| |||||||||||
Sbjct: 531 ccatgggccttcatcaaa 548
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1306 ggaaagttccatgggatgatctgacctgcaactccaattggctcatg 1352
||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 247 ggaaaattccaaggaatgatttgacctgcaactccaataggttcatg 293
>gb|CX713358.1|CX713358 RTPQ1_8_D04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D04_A032 5', mRNA sequence
Length = 877
Score = 65.9 bits (33), Expect = 7e-009
Identities = 145/181 (80%), Gaps = 1/181 (0%)
Strand = Plus / Minus
Query: 862 acaaactcatcataaacacgctcatgtacaaacgtgcgagatccagcgcagcagcattgt 921
||||||||||||| | || |||||||||||| || || || ||||| |||||||||||
Sbjct: 208 acaaactcatcatggatactctcatgtacaaaggttcgtgacccagcacagcagcattga 149
Query: 922 ccctggttaaagaacagggcaaagtgcgcaagctcaacagcatggtcaacatcagcatcg 981
||||| || || || | |||||||| || ||||| || || || || |||||||||||
Sbjct: 148 ccctgattgaaaaataatgcaaagtg-gcgagctccacggcttgatcgacatcagcatct 90
Query: 982 tccattatgatgaaaggggacttgcctcctaactccagtgtcactgtcttaaggttgctc 1041
|| || || ||||||||||| ||||| | |||| |||||||| |||||||||||||
Sbjct: 89 tcgcatacaataaaaggggactttcctccaagttccaatgtcactggcttaaggttgctc 30
Query: 1042 t 1042
|
Sbjct: 29 t 29
Score = 42.1 bits (21), Expect = 0.096
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 780 gtcaatctgcgggccctgttcaacacctttcctgaacggatcacc 824
||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 290 gtcaatctgaggaccctgctcaacaccttttctaaaaggatcacc 246
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,469
Number of Sequences: 355925
Number of extensions: 245469
Number of successful extensions: 66655
Number of sequences better than 0.5: 106
Number of HSP's better than 0.5 without gapping: 105
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66363
Number of HSP's gapped (non-prelim): 256
length of query: 2214
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2194
effective length of database: 210,158,737
effective search space: 461088268978
effective search space used: 461088268978
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)