BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716365.2.1
(936 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch... 123 1e-026
gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch... 107 8e-022
gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus ni... 107 8e-022
gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciat... 100 2e-019
gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus ni... 100 2e-019
gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pin... 76 3e-012
gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus... 76 3e-012
gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus adde... 76 3e-012
gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added... 76 3e-012
gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response R... 76 3e-012
gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magn... 76 3e-012
gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iro... 76 3e-012
gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iro... 76 3e-012
gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus ni... 74 1e-011
gb|DR058919.1|DR058919 RTNIT1_14_E01.g1_A029 Roots minus ni... 68 7e-010
gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added... 44 0.010
>gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_B12_A034 5', mRNA sequence
Length = 835
Score = 123 bits (62), Expect = 1e-026
Identities = 260/326 (79%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||
Sbjct: 651 gcccagttcacaccctcaaaaaaagggtgttgtttgatttcagtggcaccacgcttgtat 592
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
||||||||||| || || || || | || || |||||||| | ||||||||| ||||||
Sbjct: 591 gctaatcgatgttgtggctctttcacaagtaaacccctaatcaaatcccttgctgcaaaa 532
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
|| ||| ||||||||||| || || | |||||||| ||||| ||||||| ||| ||
Sbjct: 531 cttactgtgggtgattctggaaatctgagaggttgtcctactacattgaacagtgtagca 472
Query: 567 ctattcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgcca 626
| ||| || ||||| || || |||||||| || || ||||| ||||| | ||||| |||
Sbjct: 471 cgattgcctgaacccttaaagggtgtctttccaaacagaagttcatatagaaatattcca 412
Query: 627 aatgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaag 686
||||||||||| || || ||||||||||| ||||| || || ||||| ||||| || |
Sbjct: 411 aatgtccaccaatccactgcacttccatgaccctctcctttaataatctcaggagctaga 352
Query: 687 tactcatgggtgccaacaaaagacat 712
||||||||||| || ||||| |||||
Sbjct: 351 tactcatgggttcccacaaatgacat 326
>gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_H09_A034 3', mRNA sequence
Length = 838
Score = 107 bits (54), Expect = 8e-022
Identities = 258/326 (79%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
|||||||| ||||| |||||||| ||||||||||| ||||| || ||||| |||||
Sbjct: 360 gcccaatttacaccctcaaagaaagggtgctgtttgatttcagttgctcctcgcttgact 301
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
|| || ||||| |||||||| || | ||||| || || || | ||||| || ||||||
Sbjct: 300 gccaagcgatgttgaggttcttttaccagcaaacctctgatcaagtccctggctgcaaaa 241
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
|| || |||||||| || ||||||| ||||| |||||||| || || | || ||
Sbjct: 240 cttgctgtgggtgattcaggaaaccttagaggttgcccaactacattaaaaagagtagca 181
Query: 567 ctattcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgcca 626
| ||| || || ||||||||||||||||| || |||| ||| |||| | ||||| |||
Sbjct: 180 cgattgcctgaccctttgaatggtgtctttccaaagataagttcatgtagaaatatccca 121
Query: 627 aatgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaag 686
|| |||||||| ||||||||||| |||||||| || || || |||||||| ||||||||
Sbjct: 120 aaggtccaccaatctacagcactaccatgcccttctcctttgataatttccggtgccaaa 61
Query: 687 tactcatgggtgccaacaaaagacat 712
||||||||||| || ||||| |||||
Sbjct: 60 tactcatgggttcctacaaatgacat 35
>gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 5', mRNA sequence
Length = 730
Score = 107 bits (54), Expect = 8e-022
Identities = 258/326 (79%)
Strand = Plus / Plus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
|||||||| ||||| |||||||| ||||||||||| ||||| || ||||| |||||
Sbjct: 270 gcccaatttacaccctcaaagaaagggtgctgtttgatttcagttgctcctcgcttgact 329
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
|| || ||||| |||||||| || | ||||| || || || | ||||| || ||||||
Sbjct: 330 gccaagcgatgttgaggttcttttaccagcaaacctctgatcaagtccctggctgcaaaa 389
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
|| || |||||||| || ||||||| ||||| |||||||| || || | || ||
Sbjct: 390 cttgctgtgggtgattcaggaaaccttagaggttgcccaactacattaaaaagagtagca 449
Query: 567 ctattcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgcca 626
| ||| || || ||||||||||||||||| || |||| ||| |||| | ||||| |||
Sbjct: 450 cgattgcctgaccctttgaatggtgtctttccaaagataagttcatgtagaaatatccca 509
Query: 627 aatgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaag 686
|| |||||||| ||||||||||| |||||||| || || || |||||||| ||||||||
Sbjct: 510 aaggtccaccaatctacagcactaccatgcccttctcctttgataatttccggtgccaaa 569
Query: 687 tactcatgggtgccaacaaaagacat 712
||||||||||| || ||||| |||||
Sbjct: 570 tactcatgggttcctacaaatgacat 595
>gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110G11, mRNA sequence
Length = 505
Score = 99.6 bits (50), Expect = 2e-019
Identities = 113/134 (84%)
Strand = Plus / Minus
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
||||||||||||||||| || |||| ||| |||| | ||||| ||||| ||||||||
Sbjct: 313 cctttgaatggtgtctttccaaagataagttcatgtagaaatatcccaaaggtccaccaa 254
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
||||||||||| |||||||| || || || |||||||| |||||||| |||||||||||
Sbjct: 253 tctacagcactaccatgcccttctcctttgataatttccggtgccaaatactcatgggtt 194
Query: 699 ccaacaaaagacat 712
|| ||||| |||||
Sbjct: 193 cctacaaatgacat 180
>gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 3', mRNA sequence
Length = 785
Score = 99.6 bits (50), Expect = 2e-019
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
||||||||||||||||| || |||| ||| |||| | ||||| ||||| ||||||||
Sbjct: 112 cctttgaatggtgtctttccaaagataagttcatgtagaaatatcccaaaggtccaccaa 171
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
||||||||||| |||||||| || || || |||||||| |||||||| |||||||||||
Sbjct: 172 tctacagcactaccatgcccttctcctttgataatttccggtgccaaatactcatgggtt 231
Query: 699 ccaacaaaagacat 712
|| ||||| |||||
Sbjct: 232 cctacaaatgacat 245
>gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_E10_A029 5', mRNA sequence
Length = 882
Score = 75.8 bits (38), Expect = 3e-012
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 624 ccaaatgtccaccagtctacagcacttccatgcccctcgcccttt-ataatttcaggtgc 682
||||||||||||||||| |||||||| ||||| |||| ||||||| || |||||||| ||
Sbjct: 586 ccaaatgtccaccagtcaacagcactcccatggccct-gccctttgattatttcaggagc 644
Query: 683 caagtactcatgggtgccaacaaaagacat 712
||||||||| || ||||| ||||| |||||
Sbjct: 645 caagtactcgtgagtgcccacaaacgacat 674
>gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B10_A029 5', mRNA sequence
Length = 781
Score = 75.8 bits (38), Expect = 3e-012
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 624 ccaaatgtccaccagtctacagcacttccatgcccctcgcccttt-ataatttcaggtgc 682
||||||||||||||||| |||||||| ||||| |||| ||||||| || |||||||| ||
Sbjct: 498 ccaaatgtccaccagtcaacagcactcccatggccct-gccctttgattatttcaggagc 556
Query: 683 caagtactcatgggtgccaacaaaagacat 712
||||||||| || ||||| ||||| |||||
Sbjct: 557 caagtactcgtgagtgcccacaaacgacat 586
>gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_5_C10_A029 5', mRNA sequence
Length = 787
Score = 75.8 bits (38), Expect = 3e-012
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 624 ccaaatgtccaccagtctacagcacttccatgcccctcgcccttt-ataatttcaggtgc 682
||||||||||||||||| |||||||| ||||| |||| ||||||| || |||||||| ||
Sbjct: 474 ccaaatgtccaccagtcaacagcactcccatggccct-gccctttgattatttcaggagc 532
Query: 683 caagtactcatgggtgccaacaaaagacat 712
||||||||| || ||||| ||||| |||||
Sbjct: 533 caagtactcgtgagtgcccacaaacgacat 562
>gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 5', mRNA sequence
Length = 853
Score = 75.8 bits (38), Expect = 3e-012
Identities = 134/166 (80%)
Strand = Plus / Minus
Query: 582 ttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccagtct 641
|||||||| ||||| || || ||||||||||| || ||||| || | |||||||| ||
Sbjct: 303 ttgaatggcgtctttccaaacagaagctcatataaaaatattccgtaggtccaccaatca 244
Query: 642 acagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtgcca 701
|||||||| ||||| || ||||| || | |||||| || ||||| || ||||| || |||
Sbjct: 243 acagcactcccatgaccttcgcctttaacaatttcgggagccaaatattcatgtgttcca 184
Query: 702 acaaaagacatagaccttgcatctgtcggctctgcaacaagctcag 747
||||| || | ||||||||| || |||||||||||||||||||
Sbjct: 183 acaaatgaatttgaccttgcactcgtaggctctgcaacaagctcag 138
>gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_B08_A033 3', mRNA sequence
Length = 843
Score = 75.8 bits (38), Expect = 3e-012
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 624 ccaaatgtccaccagtctacagcacttccatgcccctcgcccttt-ataatttcaggtgc 682
||||||||||||||||| |||||||| ||||| |||| ||||||| || |||||||| ||
Sbjct: 361 ccaaatgtccaccagtcaacagcactcccatggccct-gccctttgattatttcaggagc 303
Query: 683 caagtactcatgggtgccaacaaaagacat 712
||||||||| || ||||| ||||| |||||
Sbjct: 302 caagtactcgtgagtgcccacaaacgacat 273
>gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_F10_A029 5', mRNA sequence
Length = 831
Score = 75.8 bits (38), Expect = 3e-012
Identities = 134/166 (80%)
Strand = Plus / Minus
Query: 582 ttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccagtct 641
|||||||| ||||| || || ||||||||||| || ||||| || | |||||||| ||
Sbjct: 610 ttgaatggcgtctttccaaacagaagctcatataaaaatattccgtaggtccaccaatca 551
Query: 642 acagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtgcca 701
|||||||| ||||| || ||||| || | |||||| || ||||| || ||||| || |||
Sbjct: 550 acagcactcccatgaccttcgcctttaacaatttcgggagccaaatattcatgtgttcca 491
Query: 702 acaaaagacatagaccttgcatctgtcggctctgcaacaagctcag 747
||||| || | ||||||||| || |||||||||||||||||||
Sbjct: 490 acaaatgaatttgaccttgcactcgtaggctctgcaacaagctcag 445
>gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 3', mRNA sequence
Length = 774
Score = 75.8 bits (38), Expect = 3e-012
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 624 ccaaatgtccaccagtctacagcacttccatgcccctcgcccttt-ataatttcaggtgc 682
||||||||||||||||| |||||||| ||||| |||| ||||||| || |||||||| ||
Sbjct: 181 ccaaatgtccaccagtcaacagcactcccatggccct-gccctttgattatttcaggagc 123
Query: 683 caagtactcatgggtgccaacaaaagacat 712
||||||||| || ||||| ||||| |||||
Sbjct: 122 caagtactcgtgagtgcccacaaacgacat 93
>gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 5', mRNA sequence
Length = 871
Score = 75.8 bits (38), Expect = 3e-012
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 624 ccaaatgtccaccagtctacagcacttccatgcccctcgcccttt-ataatttcaggtgc 682
||||||||||||||||| |||||||| ||||| |||| ||||||| || |||||||| ||
Sbjct: 318 ccaaatgtccaccagtcaacagcactcccatggccct-gccctttgattatttcaggagc 260
Query: 683 caagtactcatgggtgccaacaaaagacat 712
||||||||| || ||||| ||||| |||||
Sbjct: 259 caagtactcgtgagtgcccacaaacgacat 230
>gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 3', mRNA sequence
Length = 647
Score = 73.8 bits (37), Expect = 1e-011
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| ||||| ||||| ||||| ||||| || ||||| ||
Sbjct: 244 gcccagttcacaccctcaaagaaagggtgttgtttgatttcagtggcaccgcgcttgtat 185
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
||||||||||| || || || || | || || |||||||| | ||||||||| ||||||
Sbjct: 184 gctaatcgatgttgtggctctttcacaagtaaacccctaatcaaatcccttgctgcaaaa 125
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
|| ||| ||||||||||| || || | |||||||| ||||| ||||||| ||| ||
Sbjct: 124 cttactgtgggtgattctggaaatctgagaggttgtcctactacattgaacagtgtagca 65
Query: 567 ctattcccagaacctttgaatggtgtctt 595
| ||| || ||||| || || ||||||||
Sbjct: 64 cgattgcctgaacccttaaagggtgtctt 36
>gb|DR058919.1|DR058919 RTNIT1_14_E01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 5', mRNA sequence
Length = 587
Score = 67.9 bits (34), Expect = 7e-010
Identities = 133/166 (80%)
Strand = Plus / Minus
Query: 547 ctacgttgaacaatgtcgccctattcccagaacctttgaatggtgtcttgccgaagagaa 606
|||| ||||||| ||| || | ||| || ||||| || || |||||||| || || ||||
Sbjct: 587 ctacattgaacagtgtagcacgattgcctgaacccttaaagggtgtctttccaaacagaa 528
Query: 607 gctcatacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccct 666
| ||||| | ||||| |||||||||||||| || || ||||||||||| ||||| || |
Sbjct: 527 gttcatatagaaatattccaaatgtccaccaatccactgcacttccatgaccctctcctt 468
Query: 667 ttataatttcaggtgccaagtactcatgggtgccaacaaaagacat 712
| ||||| ||||| || | ||||||||||| || ||||| |||||
Sbjct: 467 taataatctcaggagctagatactcatgggttcccacaaatgacat 422
>gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 3', mRNA sequence
Length = 762
Score = 44.1 bits (22), Expect = 0.010
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 582 ttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccagtct 641
|||||||| ||||| || || ||||||||||| || ||||| || | |||||||| ||
Sbjct: 79 ttgaatggcgtctttccaaacagaagctcatataaaaatattccgtaggtccaccaatca 20
Query: 642 acagcacttccatg 655
|||||||| |||||
Sbjct: 19 acagcactcccatg 6
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,117
Number of Sequences: 355925
Number of extensions: 107117
Number of successful extensions: 30702
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30670
Number of HSP's gapped (non-prelim): 30
length of query: 936
length of database: 217,277,237
effective HSP length: 19
effective length of query: 917
effective length of database: 210,514,662
effective search space: 193041945054
effective search space used: 193041945054
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)