BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716352.2.1
(990 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA739547.1|AA739547 312 PtIFG2 Pinus taeda cDNA clone 85... 44 0.011
gb|AW011471.1|AW011471 ST21B11 Pine TriplEx shoot tip libra... 44 0.011
gb|AW754976.1|AW754976 PC09A09 Pine TriplEx pollen cone lib... 44 0.011
gb|BX252186.1|BX252186 BX252186 Pinus pinaster differenciat... 44 0.011
gb|BX253823.1|BX253823 BX253823 Pinus pinaster differenciat... 44 0.011
gb|BX253911.1|BX253911 BX253911 Pinus pinaster differenciat... 44 0.011
gb|BX255423.1|BX255423 BX255423 Pinus pinaster differenciat... 44 0.011
gb|BE520005.1|BE520005 NXCI_027_H07_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BE582143.1|BE582143 NXCI_029_H03_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BE582448.1|BE582448 NXCI_033_E05_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BE643686.1|BE643686 NXCI_041_H03_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BE643865.1|BE643865 NXCI_048_C06_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BE762166.1|BE762166 NXCI_082_G07_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BE762237.1|BE762237 NXCI_083_H05_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BF049660.1|BF049660 NXCI_108_G08_F NXCI (Nsf Xylem Compr... 44 0.011
gb|BF518035.1|BF518035 NXSI_030_C05_F NXSI (Nsf Xylem Side ... 44 0.011
gb|BF609755.1|BF609755 NXSI_050_A09_F NXSI (Nsf Xylem Side ... 44 0.011
gb|BG275192.1|BG275192 NXSI_140_F12_F NXSI (Nsf Xylem Side ... 44 0.011
gb|BG275420.1|BG275420 NXSI_141_F10_F NXSI (Nsf Xylem Side ... 44 0.011
gb|BQ702577.1|BQ702577 NXSI_130_B07_F NXSI (Nsf Xylem Side ... 44 0.011
gb|CF387943.1|CF387943 RTDR1_17_G12.b1_A015 Loblolly pine r... 44 0.011
gb|CF388030.1|CF388030 RTDR1_17_G12.g1_A015 Loblolly pine r... 44 0.011
gb|CF391093.1|CF391093 RTDR3_3_E04.g1_A022 Loblolly pine ro... 44 0.011
gb|CF399042.1|CF399042 RTDS3_9_B03.b1_A022 Drought-stressed... 44 0.011
gb|CF399137.1|CF399137 RTDS3_9_B03.g1_A022 Drought-stressed... 44 0.011
gb|CF471419.1|CF471419 RTDS1_3_C03.b1_A015 Drought-stressed... 44 0.011
gb|CF471463.1|CF471463 RTDS1_3_C03.g1_A015 Drought-stressed... 44 0.011
gb|CF474047.1|CF474047 RTWW2_18_H12.g1_A021 Well-watered lo... 44 0.011
gb|CF665497.1|CF665497 RTCNT1_16_H04.b1_A029 Root control P... 44 0.011
gb|CF665573.1|CF665573 RTCNT1_16_H04.g1_A029 Root control P... 44 0.011
gb|CF669396.1|CF669396 RTCNT1_43_D02.b1_A029 Root control P... 44 0.011
gb|CF670336.1|CF670336 RTCNT1_49_C09.g1_A029 Root control P... 44 0.011
gb|CO163209.1|CO163209 FLD1_40_E01.b1_A029 Root flooded Pin... 44 0.011
gb|CO163292.1|CO163292 FLD1_40_E01.g1_A029 Root flooded Pin... 44 0.011
gb|CO170327.1|CO170327 NDL1_13_G12.b1_A029 Needles control ... 44 0.011
gb|CO172607.1|CO172607 NDL1_30_F06.g1_A029 Needles control ... 44 0.011
gb|CO199493.1|CO199493 GEO2_1_C10.g1_A032 Root gravitropism... 44 0.011
gb|CO410632.1|CO410632 EST841017 Sequencing ESTs from loblo... 44 0.011
gb|CO411374.1|CO411374 EST841759 Sequencing ESTs from loblo... 44 0.011
gb|CO366373.1|CO366373 RTK1_27_B04.g1_A029 Roots minus pota... 44 0.011
gb|CV136543.1|CV136543 EST847752 Sequencing ESTs from loblo... 44 0.011
gb|CV138066.1|CV138066 EST849275 Sequencing ESTs from loblo... 44 0.011
gb|CV138203.1|CV138203 EST849412 Sequencing ESTs from loblo... 44 0.011
gb|CV145075.1|CV145075 EST856284 Sequencing ESTs from loblo... 44 0.011
gb|CV145233.1|CV145233 EST856442 Sequencing ESTs from loblo... 44 0.011
gb|CV145395.1|CV145395 EST856604 Sequencing ESTs from loblo... 44 0.011
gb|CV145437.1|CV145437 EST856646 Sequencing ESTs from loblo... 44 0.011
gb|CV145570.1|CV145570 EST856779 Sequencing ESTs from loblo... 44 0.011
gb|CV145707.1|CV145707 EST856916 Sequencing ESTs from loblo... 44 0.011
gb|CV146687.1|CV146687 EST857896 Sequencing ESTs from loblo... 44 0.011
gb|DN445394.1|DN445394 EST941193 Sequencing ESTs from loblo... 44 0.011
gb|DN446560.1|DN446560 EST942359 Sequencing ESTs from loblo... 44 0.011
gb|DN446970.1|DN446970 EST942769 Sequencing ESTs from loblo... 44 0.011
gb|DN459331.1|DN459331 EST955130 Sequencing ESTs from loblo... 44 0.011
gb|DN460405.1|DN460405 EST956204 Sequencing ESTs from loblo... 44 0.011
gb|DN461650.1|DN461650 EST957449 Sequencing ESTs from loblo... 44 0.011
gb|DN462861.1|DN462861 EST958660 Sequencing ESTs from loblo... 44 0.011
gb|DN463989.1|DN463989 EST959788 Sequencing ESTs from loblo... 44 0.011
gb|DN464119.1|DN464119 EST959918 Sequencing ESTs from loblo... 44 0.011
gb|DN464588.1|DN464588 EST960387 Sequencing ESTs from loblo... 44 0.011
gb|DR012265.1|DR012265 HEAT1_11_B04.g1_A029 Root at 37 C fo... 44 0.011
gb|DR021639.1|DR021639 STRS1_46_B07.b1_A034 Shoot tip pitch... 44 0.011
gb|DR021803.1|DR021803 STRS1_47_B10.b1_A034 Shoot tip pitch... 44 0.011
gb|DR023659.1|DR023659 STRS1_59_E02.b1_A034 Shoot tip pitch... 44 0.011
gb|DR023734.1|DR023734 STRS1_59_E02.g1_A034 Shoot tip pitch... 44 0.011
gb|DR049867.1|DR049867 RTBOR1_19_D03.g1_A029 Roots plus add... 44 0.011
gb|DR078610.1|DR078610 RTFEPL1_5_F12.g1_A029 Roots plus add... 44 0.011
gb|DR079583.1|DR079583 RTFEPL1_12_F02.b1_A029 Roots plus ad... 44 0.011
gb|DR079663.1|DR079663 RTFEPL1_12_F02.g1_A029 Roots plus ad... 44 0.011
gb|DR102273.1|DR102273 STRR1_79_F10.g1_A033 Stem Response R... 44 0.011
gb|DR102393.1|DR102393 STRR1_80_F09.g1_A033 Stem Response R... 44 0.011
gb|DR180649.1|DR180649 RTMNUT1_34_A09.b1_A029 Roots minus m... 44 0.011
gb|DR180726.1|DR180726 RTMNUT1_34_A09.g1_A029 Roots minus m... 44 0.011
gb|DR386323.1|DR386323 RTHG1_14_H03.b1_A029 Roots plus adde... 44 0.011
gb|DR388926.1|DR388926 RTHG1_31_H01.b1_A029 Roots plus adde... 44 0.011
gb|DR684493.1|DR684493 EST1074570 Normalized pine embryo li... 44 0.011
gb|DR691277.1|DR691277 EST1081363 Normalized pine embryo li... 44 0.011
gb|DR693811.1|DR693811 EST1083901 Normalized pine embryo li... 44 0.011
gb|DT624547.1|DT624547 EST1158726 Sequencing ESTs from lobl... 44 0.011
gb|DT624800.1|DT624800 EST1159075 Sequencing ESTs from lobl... 44 0.011
gb|DT632295.1|DT632295 EST1147226 Normalized pine embryo li... 44 0.011
gb|DT636744.1|DT636744 EST1151675 Normalized pine embryo li... 44 0.011
gb|DT638390.1|DT638390 EST1153321 Normalized pine embryo li... 44 0.011
gb|CV138315.1|CV138315 EST849524 Sequencing ESTs from loblo... 42 0.043
gb|DR386431.1|DR386431 RTHG1_15_E03.b1_A029 Roots plus adde... 42 0.043
gb|DR690964.1|DR690964 EST1081050 Normalized pine embryo li... 42 0.043
gb|DT626617.1|DT626617 EST1158541 Sequencing ESTs from lobl... 42 0.043
gb|BE582120.1|BE582120 NXCI_029_C08_F NXCI (Nsf Xylem Compr... 40 0.17
gb|BE582342.1|BE582342 NXCI_032_C06_F NXCI (Nsf Xylem Compr... 40 0.17
>gb|AA739547.1|AA739547 312 PtIFG2 Pinus taeda cDNA clone 8510M 3', mRNA sequence
Length = 634
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 219 acaaaaccaaagccccttgatctcccagtctctctgtc 182
>gb|AW011471.1|AW011471 ST21B11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST21B11, mRNA sequence
Length = 517
Score = 44.1 bits (22), Expect = 0.011
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccc 537
||||| |||||||||||||||| ||||||||||
Sbjct: 356 acaaaaccaaagcctcttgaccgaccagtctccc 323
>gb|AW754976.1|AW754976 PC09A09 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC09A09, mRNA sequence
Length = 408
Score = 44.1 bits (22), Expect = 0.011
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccc 537
||||| |||||||||||||||| ||||||||||
Sbjct: 349 acaaaaccaaagcctcttgaccgaccagtctccc 316
>gb|BX252186.1|BX252186 BX252186 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061A09 similar to 40S RIBOSOMAL PROTEIN
S19, MITOCHONDRIAL PRECURSOR, mRNA sequence
Length = 695
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 337 acaaaaccaaagccccttgatctcccagtctctctgtc 300
>gb|BX253823.1|BX253823 BX253823 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP089B02 similar to 40S RIBOSOMAL PROTEIN
S19, MITOCHONDRIAL PRECURSOR, mRNA sequence
Length = 427
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 287 acaaaaccaaagccccttgatctcccagtctctctgtc 250
>gb|BX253911.1|BX253911 BX253911 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP090E03 similar to 40S RIBOSOMAL PROTEIN
S19, MITOCHONDRIAL PRECURSOR, mRNA sequence
Length = 322
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 202 acaaaaccaaagccccttgatctcccagtctctctgtc 165
>gb|BX255423.1|BX255423 BX255423 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005F03 similar to 40S RIBOSOMAL PROTEIN
S19, MITOCHONDRIAL PRECURSOR, mRNA sequence
Length = 686
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 287 acaaaaccaaagccccttgatctcccagtctctctgtc 250
>gb|BE520005.1|BE520005 NXCI_027_H07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_027_H07 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 286 acaaaaccaaagccccttgatctcccagtctctctgtc 249
>gb|BE582143.1|BE582143 NXCI_029_H03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_029_H03 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 267 acaaaaccaaagccccttgatctcccagtctctctgtc 230
>gb|BE582448.1|BE582448 NXCI_033_E05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_033_E05 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 437
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 322 acaaaaccaaagccccttgatctcccagtctctctgtc 285
>gb|BE643686.1|BE643686 NXCI_041_H03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_041_H03 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 318
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 284 acaaaaccaaagccccttgatctcccagtctctctgtc 247
>gb|BE643865.1|BE643865 NXCI_048_C06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_048_C06 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 409
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 291 acaaaaccaaagccccttgatctcccagtctctctgtc 254
>gb|BE762166.1|BE762166 NXCI_082_G07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_082_G07 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 279 acaaaaccaaagccccttgatctcccagtctctctgtc 242
>gb|BE762237.1|BE762237 NXCI_083_H05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_083_H05 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 345
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 282 acaaaaccaaagccccttgatctcccagtctctctgtc 245
>gb|BF049660.1|BF049660 NXCI_108_G08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_108_G08 5' similar to Arabidopsis
thaliana sequence At5g61030 RNA-binding protein - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 282 acaaaaccaaagccccttgatctcccagtctctctgtc 245
>gb|BF518035.1|BF518035 NXSI_030_C05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_030_C05 5' similar to Arabidopsis thaliana
sequence At5g61030 RNA-binding protein - like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 472
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 284 acaaaaccaaagccccttgatctcccagtctctctgtc 247
>gb|BF609755.1|BF609755 NXSI_050_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_050_A09 5' similar to Arabidopsis thaliana
sequence At5g61030 RNA-binding protein - like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 384
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 322 acaaaaccaaagccccttgatctcccagtctctctgtc 285
>gb|BG275192.1|BG275192 NXSI_140_F12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_F12 5' similar to Arabidopsis thaliana
sequence At5g54580 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 490
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttga 523
||||||||||||||||||||||
Sbjct: 353 tcacaaagccaaagcctcttga 332
>gb|BG275420.1|BG275420 NXSI_141_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_141_F10 5' similar to Arabidopsis thaliana
sequence At5g61030 RNA-binding protein - like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 446
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 284 acaaaaccaaagccccttgatctcccagtctctctgtc 247
>gb|BQ702577.1|BQ702577 NXSI_130_B07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_130_B07 5' similar to Arabidopsis thaliana
sequence At5g61030 RNA-binding protein - like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 498
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 292 acaaaaccaaagccccttgatctcccagtctctctgtc 255
>gb|CF387943.1|CF387943 RTDR1_17_G12.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_17_G12_A015 3', mRNA
sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 365 acaaaaccaaagccccttgatctcccagtctctctgtc 402
>gb|CF388030.1|CF388030 RTDR1_17_G12.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_17_G12_A015 5', mRNA
sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 584 acaaaaccaaagccccttgatctcccagtctctctgtc 621
>gb|CF391093.1|CF391093 RTDR3_3_E04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_3_E04_A022 5', mRNA
sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 502 tcacaaagccaaagcctcttga 523
||||||||||||||||||||||
Sbjct: 362 tcacaaagccaaagcctcttga 383
>gb|CF399042.1|CF399042 RTDS3_9_B03.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_9_B03_A022 3', mRNA sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 108 acaaaaccaaagccccttgatctcccagtctctctgtc 71
>gb|CF399137.1|CF399137 RTDS3_9_B03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_9_B03_A022 5', mRNA sequence
Length = 583
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 103 acaaaaccaaagccccttgatctcccagtctctctgtc 66
>gb|CF471419.1|CF471419 RTDS1_3_C03.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_3_C03_A015 3', mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 88 acaaaaccaaagccccttgatctcccagtctctctgtc 51
>gb|CF471463.1|CF471463 RTDS1_3_C03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_3_C03_A015 5', mRNA sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 329 acaaaaccaaagccccttgatctcccagtctctctgtc 292
>gb|CF474047.1|CF474047 RTWW2_18_H12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_H12_A021 5', mRNA sequence
Length = 720
Score = 44.1 bits (22), Expect = 0.011
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 502 tcacaaagccaaagcctcttga 523
||||||||||||||||||||||
Sbjct: 346 tcacaaagccaaagcctcttga 325
>gb|CF665497.1|CF665497 RTCNT1_16_H04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_H04_A029 3', mRNA sequence
Length = 712
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 432 acaaaaccaaagccccttgatctcccagtctctctgtc 469
>gb|CF665573.1|CF665573 RTCNT1_16_H04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_H04_A029 5', mRNA sequence
Length = 620
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 578 acaaaaccaaagccccttgatctcccagtctctctgtc 615
>gb|CF669396.1|CF669396 RTCNT1_43_D02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_43_D02_A029 3', mRNA sequence
Length = 385
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 100 acaaaaccaaagccccttgatctcccagtctctctgtc 137
>gb|CF670336.1|CF670336 RTCNT1_49_C09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C09_A029 5', mRNA sequence
Length = 729
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 235 acaaaaccaaagccccttgatctcccagtctctctgtc 198
>gb|CO163209.1|CO163209 FLD1_40_E01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_E01_A029 3', mRNA sequence
Length = 715
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 117 acaaaaccaaagccccttgatctcccagtctctctgtc 80
>gb|CO163292.1|CO163292 FLD1_40_E01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_E01_A029 5', mRNA sequence
Length = 788
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 237 acaaaaccaaagccccttgatctcccagtctctctgtc 200
>gb|CO170327.1|CO170327 NDL1_13_G12.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_G12_A029 3', mRNA sequence
Length = 775
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 490 acaaaaccaaagccccttgatctcccagtctctctgtc 527
>gb|CO172607.1|CO172607 NDL1_30_F06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_F06_A029 5', mRNA sequence
Length = 856
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 261 acaaaaccaaagccccttgatctcccagtctctctgtc 224
>gb|CO199493.1|CO199493 GEO2_1_C10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C10_A032 5', mRNA sequence
Length = 731
Score = 44.1 bits (22), Expect = 0.011
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccc 537
||||| |||||||||||||||| ||||||||||
Sbjct: 655 acaaaaccaaagcctcttgaccgaccagtctccc 688
>gb|CO410632.1|CO410632 EST841017 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAL564 5' end, mRNA sequence
Length = 805
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 335 acaaaaccaaagccccttgatctcccagtctctctgtc 298
>gb|CO411374.1|CO411374 EST841759 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALJ41 5' end, mRNA sequence
Length = 802
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 335 acaaaaccaaagccccttgatctcccagtctctctgtc 298
>gb|CO366373.1|CO366373 RTK1_27_B04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B04_A029 5', mRNA sequence
Length = 857
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 266 acaaaaccaaagccccttgatctcccagtctctctgtc 229
>gb|CV136543.1|CV136543 EST847752 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAD08 5' end, mRNA sequence
Length = 756
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 289 acaaaaccaaagccccttgatctcccagtctctctgtc 252
>gb|CV138066.1|CV138066 EST849275 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAY36 5' end, mRNA sequence
Length = 888
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 289 acaaaaccaaagccccttgatctcccagtctctctgtc 252
>gb|CV138203.1|CV138203 EST849412 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB015 5' end, mRNA sequence
Length = 862
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 257 acaaaaccaaagccccttgatctcccagtctctctgtc 220
>gb|CV145075.1|CV145075 EST856284 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDE01 5' end, mRNA sequence
Length = 715
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 289 acaaaaccaaagccccttgatctcccagtctctctgtc 252
>gb|CV145233.1|CV145233 EST856442 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDF94 5' end, mRNA sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 289 acaaaaccaaagccccttgatctcccagtctctctgtc 252
>gb|CV145395.1|CV145395 EST856604 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDI06 5' end, mRNA sequence
Length = 856
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 256 acaaaaccaaagccccttgatctcccagtctctctgtc 219
>gb|CV145437.1|CV145437 EST856646 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDI57 5' end, mRNA sequence
Length = 820
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 221 acaaaaccaaagccccttgatctcccagtctctctgtc 184
>gb|CV145570.1|CV145570 EST856779 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDK17 5' end, mRNA sequence
Length = 856
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 256 acaaaaccaaagccccttgatctcccagtctctctgtc 219
>gb|CV145707.1|CV145707 EST856916 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDL82 5' end, mRNA sequence
Length = 892
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 289 acaaaaccaaagccccttgatctcccagtctctctgtc 252
>gb|CV146687.1|CV146687 EST857896 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDZ20 5' end, mRNA sequence
Length = 865
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtc 541
||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 294 acaaaaccaaagccccttgatctcccagtctctctgtc 257
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,309
Number of Sequences: 355925
Number of extensions: 88309
Number of successful extensions: 24243
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24141
Number of HSP's gapped (non-prelim): 102
length of query: 990
length of database: 217,277,237
effective HSP length: 19
effective length of query: 971
effective length of database: 210,514,662
effective search space: 204409736802
effective search space used: 204409736802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)