BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.2
(764 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR742574.1|DR742574 RTCU1_5_D01.b2_A029 Roots plus added... 42 0.033
gb|CO201211.1|CO201211 RTCNT2_4_G07.b1_A029 Root control 2 ... 40 0.13
gb|CX653107.1|CX653107 COLD1_63_A08.g1_A029 Root cold Pinus... 40 0.13
gb|DR015667.1|DR015667 STRS1_4_H07.g1_A034 Shoot tip pitch ... 40 0.13
gb|DR101710.1|DR101710 STRR1_75_F02.b1_A033 Stem Response R... 40 0.13
gb|DR177291.1|DR177291 RTMNUT1_4_H11.b1_A029 Roots minus mi... 40 0.13
>gb|DR742574.1|DR742574 RTCU1_5_D01.b2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_D01_A029 3', mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.033
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 420 gatttcgtggctaaacaggtcgcaccctacaagaaagttcg 460
||||| || ||| ||||||| ||||| ||||||||||||||
Sbjct: 193 gattttgtagctcaacaggtagcaccatacaagaaagttcg 233
>gb|CO201211.1|CO201211 RTCNT2_4_G07.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_G07_A029 3', mRNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 237 aaagagttgataaagtacaagggatatcaggt 268
||||||||||| |||||||| |||| ||||||
Sbjct: 245 aaagagttgatcaagtacaaaggatttcaggt 276
>gb|CX653107.1|CX653107 COLD1_63_A08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_A08_A029 5', mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 237 aaagagttgataaagtacaagggatatcaggt 268
||||||||||| |||||||| |||| ||||||
Sbjct: 447 aaagagttgatcaagtacaaaggatttcaggt 416
>gb|DR015667.1|DR015667 STRS1_4_H07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_H07_A034 5', mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 234 ttgaaagagttgataaagtacaagggatatcaggtacctcctgc 277
|||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 684 ttgaaagagttgatcaagtataagggttaccaggttgctcctgc 641
>gb|DR101710.1|DR101710 STRR1_75_F02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_75_F02_A033 3', mRNA sequence
Length = 871
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 237 aaagagttgataaagtacaagggatatcaggt 268
||||||||||| |||||||| | |||||||||
Sbjct: 339 aaagagttgatcaagtacaaagcatatcaggt 370
>gb|DR177291.1|DR177291 RTMNUT1_4_H11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_H11_A029 3', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 237 aaagagttgataaagtacaagggatatcaggt 268
||||||||||| |||||||| | |||||||||
Sbjct: 63 aaagagttgatcaagtacaaagcatatcaggt 94
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,476
Number of Sequences: 355925
Number of extensions: 74476
Number of successful extensions: 17685
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17672
Number of HSP's gapped (non-prelim): 13
length of query: 764
length of database: 217,277,237
effective HSP length: 19
effective length of query: 745
effective length of database: 210,514,662
effective search space: 156833423190
effective search space used: 156833423190
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)