BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX680538.1|BX680538 BX680538 RS Pinus pinaster cDNA clon... 107 6e-022
gb|BX784089.1|BX784089 BX784089 Pinus pinaster differenciat... 107 6e-022
gb|BF610203.1|BF610203 NXSI_055_H10_F NXSI (Nsf Xylem Side ... 100 2e-019
gb|BQ290937.1|BQ290937 NXRV051_E09_F NXRV (Nsf Xylem Root w... 100 2e-019
gb|CO173557.1|CO173557 NDL1_37_C07.b1_A029 Needles control ... 100 2e-019
gb|CO173891.1|CO173891 NDL1_40_D06.b1_A029 Needles control ... 100 2e-019
gb|DN626438.1|DN626438 EST977254 Subtracted pine embryo lib... 100 2e-019
gb|DN627459.1|DN627459 EST978275 Subtracted pine embryo lib... 100 2e-019
gb|DR070387.1|DR070387 RTDK1_13_B01.b1_A029 Roots, dark Pin... 100 2e-019
gb|DR070461.1|DR070461 RTDK1_13_B01.g1_A029 Roots, dark Pin... 100 2e-019
gb|DR682926.1|DR682926 EST1073001 Normalized pine embryo li... 100 2e-019
gb|DR682927.1|DR682927 EST1073002 Normalized pine embryo li... 100 2e-019
gb|AW755175.1|AW755175 PC11H08 Pine TriplEx pollen cone lib... 86 2e-015
gb|BI397752.1|BI397752 NXPV_104_H06_F NXPV (Nsf Xylem Plani... 86 2e-015
gb|BM492237.1|BM492237 NXRV_022_E10_F NXRV (Nsf Xylem Root ... 86 2e-015
gb|BQ291322.1|BQ291322 NXRV058_F11_F NXRV (Nsf Xylem Root w... 86 2e-015
gb|BQ291340.1|BQ291340 NXRV058_H10_F NXRV (Nsf Xylem Root w... 86 2e-015
gb|BQ634364.1|BQ634364 NXRV068_A07_F NXRV (Nsf Xylem Root w... 86 2e-015
gb|BQ699903.1|BQ699903 NXRV131_B10_F NXRV (Nsf Xylem Root w... 86 2e-015
gb|BQ701047.1|BQ701047 NXRV114_G10_F NXRV (Nsf Xylem Root w... 86 2e-015
gb|BQ701903.1|BQ701903 NXSI_122_A06_F NXSI (Nsf Xylem Side ... 86 2e-015
gb|BQ702601.1|BQ702601 NXSI_130_D10_F NXSI (Nsf Xylem Side ... 86 2e-015
gb|BX679905.1|BX679905 BX679905 RS Pinus pinaster cDNA clon... 86 2e-015
gb|BX680447.1|BX680447 BX680447 RS Pinus pinaster cDNA clon... 86 2e-015
gb|DN626527.1|DN626527 EST977343 Subtracted pine embryo lib... 86 2e-015
gb|DN626661.1|DN626661 EST977477 Subtracted pine embryo lib... 86 2e-015
gb|DN626768.1|DN626768 EST977584 Subtracted pine embryo lib... 86 2e-015
gb|DN627853.1|DN627853 EST978669 Subtracted pine embryo lib... 86 2e-015
gb|DN627869.1|DN627869 EST978685 Subtracted pine embryo lib... 86 2e-015
gb|DN628902.1|DN628902 EST979718 Subtracted pine embryo lib... 86 2e-015
gb|DN632451.1|DN632451 EST983267 Subtracted pine embryo lib... 86 2e-015
gb|BF517938.1|BF517938 NXSI_031_H01_F NXSI (Nsf Xylem Side ... 82 4e-014
gb|BF777479.1|BF777479 NXSI_069_A11_F NXSI (Nsf Xylem Side ... 80 1e-013
gb|BF517792.1|BF517792 NXSI_031_C08_F NXSI (Nsf Xylem Side ... 78 6e-013
gb|BG275699.1|BG275699 NXSI_144_H05_F NXSI (Nsf Xylem Side ... 78 6e-013
gb|DN628805.1|DN628805 EST979621 Subtracted pine embryo lib... 78 6e-013
gb|DN632980.1|DN632980 EST983796 Subtracted pine embryo lib... 78 6e-013
gb|DN633762.1|DN633762 EST984578 Subtracted pine embryo lib... 78 6e-013
gb|DR118733.1|DR118733 RTMG1_18_G09.g1_A029 Roots minus mag... 78 6e-013
gb|DT629858.1|DT629858 EST1154270 Subtracted pine embryo li... 78 6e-013
gb|DT630474.1|DT630474 EST1154886 Subtracted pine embryo li... 78 6e-013
gb|BF220357.1|BF220357 NXCI_144_B04_F NXCI (Nsf Xylem Compr... 76 2e-012
gb|BQ654940.1|BQ654940 NXRV088_A07_F NXRV (Nsf Xylem Root w... 68 5e-010
gb|AW754567.1|AW754567 PC03G03 Pine TriplEx pollen cone lib... 66 2e-009
gb|CF398778.1|CF398778 RTDS3_16_F11.b1_A022 Drought-stresse... 66 2e-009
gb|AW290676.1|AW290676 NXNV044D09F Nsf Xylem Normal wood Ve... 64 8e-009
gb|CD027303.1|CD027303 NXNV044D09 Nsf Xylem Normal wood Ver... 64 8e-009
gb|CO173282.1|CO173282 NDL1_35_E06.b1_A029 Needles control ... 64 8e-009
gb|DN633709.1|DN633709 EST984525 Subtracted pine embryo lib... 64 8e-009
gb|BX678454.1|BX678454 BX678454 RS Pinus pinaster cDNA clon... 60 1e-007
gb|BM492923.1|BM492923 NXRV_032_A04_F NXRV (Nsf Xylem Root ... 52 3e-005
gb|CD016174.1|CD016174 NXCI_011_H12_F NXCI (Nsf Xylem Compr... 52 3e-005
gb|AW226364.1|AW226364 ST81E04 Pine TriplEx shoot tip libra... 50 1e-004
gb|BQ699929.1|BQ699929 NXRV131_E09_F NXRV (Nsf Xylem Root w... 48 5e-004
gb|AL750292.1|AL750292 AL750292 AS Pinus pinaster cDNA clon... 42 0.031
gb|CO158567.1|CO158567 FLD1_7_F03.g1_A029 Root flooded Pinu... 42 0.031
gb|AW697582.1|AW697582 ST59C11 Pine TriplEx shoot tip libra... 38 0.48
>gb|BX680538.1|BX680538 BX680538 RS Pinus pinaster cDNA clone RS44H08, mRNA sequence
Length = 535
Score = 107 bits (54), Expect = 6e-022
Identities = 159/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 9 atggcaccgaagaaggaaaaggctcccccaccatcctccaagcctgccaagtctggcggt 68
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||||||||| |||||
Sbjct: 69 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggagaaggtgaacaatatg 128
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
|| || || |||||||| || || |||||||| ||||| || | |||||| |||||||
Sbjct: 129 gttctgtttgatcaggcaacttatgataagcttctctctgaagcgcccaaatacaagctc 188
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 189 atcaccccttccat 202
>gb|BX784089.1|BX784089 BX784089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129A02 similar to 40S ribosomal protein S25,
mRNA sequence
Length = 643
Score = 107 bits (54), Expect = 6e-022
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 580 atggcaccgaagaaggaaaaggctcccccaccatcctccaagcctgccaagtctggcggt 521
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||||||||| |||||
Sbjct: 520 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggagaaggtgaacaatatg 461
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
|| || || |||||||| || || |||||||| ||||| || | |||||| |||||||
Sbjct: 460 gttctgtttgatcaggcaacttatgataagcttctctctgaagcgcccaaatacaagctc 401
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 400 atcaccccttccat 387
>gb|BF610203.1|BF610203 NXSI_055_H10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_055_H10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 445
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 90 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 149
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 150 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 209
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 210 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 269
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 270 atcaccccttccat 283
>gb|BQ290937.1|BQ290937 NXRV051_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV051_E09 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 782
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 110 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 169
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 170 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 229
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 230 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 289
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 290 atcaccccttccat 303
>gb|CO173557.1|CO173557 NDL1_37_C07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_37_C07_A029 3', mRNA sequence
Length = 663
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 94 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 153
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 154 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 213
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 214 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 273
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 274 atcaccccttccat 287
>gb|CO173891.1|CO173891 NDL1_40_D06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_40_D06_A029 3', mRNA sequence
Length = 611
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 49 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 108
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 109 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 168
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 169 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 228
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 229 atcaccccttccat 242
>gb|DN626438.1|DN626438 EST977254 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA247, mRNA sequence
Length = 672
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 128 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 187
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 188 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 247
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 248 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 307
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 308 atcaccccttccat 321
>gb|DN627459.1|DN627459 EST978275 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAK25, mRNA sequence
Length = 690
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 149 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 208
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 209 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 268
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 269 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 328
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 329 atcaccccttccat 342
>gb|DR070387.1|DR070387 RTDK1_13_B01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B01_A029 3', mRNA sequence
Length = 841
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 630 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 571
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 570 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 511
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 510 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 451
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 450 atcaccccttccat 437
>gb|DR070461.1|DR070461 RTDK1_13_B01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B01_A029 5', mRNA sequence
Length = 764
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 734 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 675
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 674 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 615
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 614 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 555
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 554 atcaccccttccat 541
>gb|DR682926.1|DR682926 EST1073001 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD19, mRNA sequence
Length = 563
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 553 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 494
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 493 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 434
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 433 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 374
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 373 atcaccccttccat 360
>gb|DR682927.1|DR682927 EST1073002 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD19 3' end, mRNA sequence
Length = 713
Score = 99.6 bits (50), Expect = 2e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 123 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 182
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || |||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 183 ggcaaacagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 242
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 243 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 302
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 303 atcaccccttccat 316
>gb|AW755175.1|AW755175 PC11H08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC11H08, mRNA sequence
Length = 526
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 131 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 190
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 191 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 245
>gb|BI397752.1|BI397752 NXPV_104_H06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_104_H06 5' similar to Arabidopsis
thaliana sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 480
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 113 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 172
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 173 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 227
>gb|BM492237.1|BM492237 NXRV_022_E10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_022_E10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 399
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 118 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 177
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 178 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 232
>gb|BQ291322.1|BQ291322 NXRV058_F11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV058_F11 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 591
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 135 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 194
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 195 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 249
>gb|BQ291340.1|BQ291340 NXRV058_H10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV058_H10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 591
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 135 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 194
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 195 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 249
>gb|BQ634364.1|BQ634364 NXRV068_A07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV068_A07 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 563
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 100 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 159
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 160 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 214
>gb|BQ699903.1|BQ699903 NXRV131_B10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV131_B10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 133 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 192
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 193 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 247
>gb|BQ701047.1|BQ701047 NXRV114_G10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV114_G10 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 136 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 195
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 196 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 250
>gb|BQ701903.1|BQ701903 NXSI_122_A06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_A06 5' similar to Arabidopsis thaliana
sequence At4g34555 40S ribosomal 25S subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 402
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 177 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 236
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 237 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 291
>gb|BQ702601.1|BQ702601 NXSI_130_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_130_D10 5' similar to Arabidopsis thaliana
sequence At4g34555 40S ribosomal 25S subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 177 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 236
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 237 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 291
>gb|BX679905.1|BX679905 BX679905 RS Pinus pinaster cDNA clone RS36A12, mRNA sequence
Length = 262
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 55 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 114
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 115 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 169
>gb|BX680447.1|BX680447 BX680447 RS Pinus pinaster cDNA clone RS43E12, mRNA sequence
Length = 623
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 178 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 237
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 238 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 292
>gb|DN626527.1|DN626527 EST977343 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA417, mRNA sequence
Length = 446
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 344 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 285
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 284 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 230
>gb|DN626661.1|DN626661 EST977477 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA602, mRNA sequence
Length = 457
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 103 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 162
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 163 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 217
>gb|DN626768.1|DN626768 EST977584 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA763, mRNA sequence
Length = 458
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 355 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 296
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 295 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 241
>gb|DN627853.1|DN627853 EST978669 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAQ69, mRNA sequence
Length = 457
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 355 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 296
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 295 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 241
>gb|DN627869.1|DN627869 EST978685 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAQ92, mRNA sequence
Length = 458
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 355 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 296
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 295 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 241
>gb|DN628902.1|DN628902 EST979718 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB645, mRNA sequence
Length = 446
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 344 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 285
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 284 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 230
>gb|DN632451.1|DN632451 EST983267 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACP25, mRNA sequence
Length = 457
Score = 85.7 bits (43), Expect = 2e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 355 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 296
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 295 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 241
>gb|BF517938.1|BF517938 NXSI_031_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_031_H01 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 500
Score = 81.8 bits (41), Expect = 4e-014
Identities = 155/194 (79%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 96 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 155
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| || ||| |||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 156 ggcaaacagnnnaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatg 215
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| || |||||||| || || |||||||| ||| | || | |||||| |||||||
Sbjct: 216 gtgctgtttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctc 275
Query: 278 atcaccccatccat 291
|||||||| |||||
Sbjct: 276 atcaccccttccat 289
>gb|BF777479.1|BF777479 NXSI_069_A11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_A11 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 294
Score = 79.8 bits (40), Expect = 1e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 115 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 174
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| | ||||||||||||||||
Sbjct: 175 ctttttgaccaagcaacttacgataagcttctcttanaagtgcccaagtacaagc 229
>gb|BF517792.1|BF517792 NXSI_031_C08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_031_C08 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 191 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 250
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| ||| || ||||||||||||||||
Sbjct: 251 ctttttgaccaagcaacttacgataagcttctcgtagaagtgcccaagtacaagc 305
>gb|BG275699.1|BG275699 NXSI_144_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_H05 5' similar to Arabidopsis thaliana
sequence At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 85 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 144
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| ||| || ||||||||||||||||
Sbjct: 145 ctttttgaccaagcaacttacgataagcttctcgtagaagtgcccaagtacaagc 199
>gb|DN628805.1|DN628805 EST979621 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB488, mRNA sequence
Length = 457
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| | |||| ||
Sbjct: 355 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgagcaacatggtt 296
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 295 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 241
>gb|DN632980.1|DN632980 EST983796 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACY14, mRNA sequence
Length = 445
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 103 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 162
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || |||||||||| |||| || ||||||||||||||||
Sbjct: 163 ctttttgaccaagcaacttacgataagcctctcttagaagtgcccaagtacaagc 217
>gb|DN633762.1|DN633762 EST984578 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADB53, mRNA sequence
Length = 457
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| |
Sbjct: 355 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggct 296
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 295 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 241
>gb|DR118733.1|DR118733 RTMG1_18_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_G09_A029 5', mRNA sequence
Length = 666
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| ||
Sbjct: 100 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggtt 159
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| ||| || ||||||||||||||||
Sbjct: 160 ctttttgaccaagcaacttacgataagcttctcgtagaagtgcccaagtacaagc 214
>gb|DT629858.1|DT629858 EST1154270 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME170, mRNA sequence
Length = 477
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| | |||| ||
Sbjct: 375 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgagcaacatggtt 316
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 315 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 261
>gb|DT630474.1|DT630474 EST1154886 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME934, mRNA sequence
Length = 475
Score = 77.8 bits (39), Expect = 6e-013
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtg 220
||||||||||||||||| |||||||| || ||||||||||||||||| |||||| |
Sbjct: 375 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggct 316
Query: 221 ctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
|| || || || || || ||||||||||| |||| || ||||||||||||||||
Sbjct: 315 ctttttgaccaagcaacttacgataagcttctcttagaagtgcccaagtacaagc 261
>gb|BF220357.1|BF220357 NXCI_144_B04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_144_B04 5', mRNA sequence
Length = 232
Score = 75.8 bits (38), Expect = 2e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||| ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||
Sbjct: 96 atggcaccgaagaaggacaaggctccccccccatcctccaagcctgccaagtctggcggt 155
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagca 195
|| || |||||||||||||| |||||||| || |||||
Sbjct: 156 ggcaaacagaagaagaagaaatggagcaaaggaaagca 193
>gb|BQ654940.1|BQ654940 NXRV088_A07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV088_A07 5' similar to Arabidopsis thaliana
sequence At2g16360 40S ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 322
Score = 67.9 bits (34), Expect = 5e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaac 214
||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||
Sbjct: 135 aagcagaagaataagaaatggagcaaaggaaagcagaaggagaaggtgaacaac 188
>gb|AW754567.1|AW754567 PC03G03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03G03, mRNA sequence
Length = 509
Score = 65.9 bits (33), Expect = 2e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 161 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaag 205
||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 203 aagcagaagaagaagaaatggagcaaaggaaagcagaaggagaag 247
>gb|CF398778.1|CF398778 RTDS3_16_F11.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_F11_A022 3', mRNA sequence
Length = 527
Score = 65.9 bits (33), Expect = 2e-009
Identities = 114/141 (80%)
Strand = Plus / Plus
Query: 135 ccaagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagc 194
||||||| |||||||| || || || || |||||||||||||| |||||||| || ||||
Sbjct: 1 ccaagcctgccaagtctggcggtggcaaacagaagaagaagaaatggagcaaaggaaagc 60
Query: 195 agaaggagaaggtcaacaacgctgtgctcttcgatcaggccacctacgataagctgctct 254
| ||||| ||||| ||||| ||||| || |||||||| || || |||||||| |||
Sbjct: 61 aaaaggaaaaggtgaacaatatggtgctgtttgatcaggcaacttatgataagcttctca 120
Query: 255 ccgaggtgcccaagtacaagc 275
| || | |||||| |||||||
Sbjct: 121 ctgaagcgcccaaatacaagc 141
>gb|AW290676.1|AW290676 NXNV044D09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044D09 5', mRNA sequence
Length = 286
Score = 63.9 bits (32), Expect = 8e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 164 cagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctc 223
|||||||||||||| |||||||| || ||||| ||||| ||||| ||||| |||||
Sbjct: 11 cagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatggtgctg 70
Query: 224 ttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagatcacc 283
|| |||||||| || || |||||||| ||| | || | |||||| ||||||| ||||||
Sbjct: 71 tttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctcatcacc 130
Query: 284 ccatccat 291
|| |||||
Sbjct: 131 ccttccat 138
>gb|CD027303.1|CD027303 NXNV044D09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044D09 5' similar to Arabidopsis thaliana sequence
At4g39200 ribosomal protein S25 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 286
Score = 63.9 bits (32), Expect = 8e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 164 cagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctc 223
|||||||||||||| |||||||| || ||||| ||||| ||||| ||||| |||||
Sbjct: 11 cagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatggtgctg 70
Query: 224 ttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagatcacc 283
|| |||||||| || || |||||||| ||| | || | |||||| ||||||| ||||||
Sbjct: 71 tttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctcatcacc 130
Query: 284 ccatccat 291
|| |||||
Sbjct: 131 ccttccat 138
>gb|CO173282.1|CO173282 NDL1_35_E06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_E06_A029 3', mRNA sequence
Length = 595
Score = 63.9 bits (32), Expect = 8e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 164 cagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctc 223
|||||||||||||| |||||||| || ||||| ||||| ||||| ||||| |||||
Sbjct: 13 cagaagaagaagaaatggagcaaaggaaagcaaaaggaaaaggtgaacaatatggtgctg 72
Query: 224 ttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagatcacc 283
|| |||||||| || || |||||||| ||| | || | |||||| ||||||| ||||||
Sbjct: 73 tttgatcaggcaacttatgataagcttctcactgaagcgcccaaatacaagctcatcacc 132
Query: 284 ccatccat 291
|| |||||
Sbjct: 133 ccttccat 140
>gb|DN633709.1|DN633709 EST984525 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADA74, mRNA sequence
Length = 443
Score = 63.9 bits (32), Expect = 8e-009
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 168 agaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcg 227
|||||||||| |||||||| || ||||||||||||||||| |||||| || || || |
Sbjct: 337 agaagaagaaatggagcaaaggaaagcagaaggagaaggtgaacaacatggttctttttg 278
Query: 228 atcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| || || || |||||||||| |||| || ||||||||||||||||
Sbjct: 277 accaagcaacttacgataagcctctcttagaagtgcccaagtacaagc 230
>gb|BX678454.1|BX678454 BX678454 RS Pinus pinaster cDNA clone RS09D07, mRNA sequence
Length = 544
Score = 60.0 bits (30), Expect = 1e-007
Identities = 85/102 (83%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||| |||||||||| ||||||||||||||||| |||||| || || || || ||||
Sbjct: 1 agaaatggagcaagga-aagcagaaggagaaggtgaacaacatggttctttttgaccagg 59
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| || ||||||||||| |||| || ||||||||||||||||
Sbjct: 60 caacttacgataagcttctcttagaagtgcccaagtacaagc 101
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,711
Number of Sequences: 355925
Number of extensions: 127711
Number of successful extensions: 45106
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44961
Number of HSP's gapped (non-prelim): 145
length of query: 713
length of database: 217,277,237
effective HSP length: 19
effective length of query: 694
effective length of database: 210,514,662
effective search space: 146097175428
effective search space used: 146097175428
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)