BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus ad... 94 1e-017
gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus ad... 94 1e-017
gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciat... 88 6e-016
gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA ... 86 2e-015
gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clon... 86 2e-015
gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch... 86 2e-015
gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch... 86 2e-015
gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch... 86 2e-015
gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone lib... 78 6e-013
gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Ve... 62 3e-008
gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root w... 62 3e-008
gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Ver... 62 3e-008
gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control ... 58 5e-007
gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus adde... 56 2e-006
gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus adde... 56 2e-006
gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side ... 54 8e-006
gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clon... 42 0.032
gb|BX255648.1|BX255648 BX255648 Pinus pinaster differenciat... 42 0.032
gb|BF518224.1|BF518224 NXSI_036_E08_F NXSI (Nsf Xylem Side ... 42 0.032
gb|BM133883.1|BM133883 NXLV_013_F02_F NXLV (Nsf Xylem Late ... 42 0.032
gb|BQ698859.1|BQ698859 NXRV116_C09_F NXRV (Nsf Xylem Root w... 42 0.032
gb|CO157902.1|CO157902 FLD1_3_A08.b1_A029 Root flooded Pinu... 42 0.032
gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clon... 40 0.13
gb|CV035953.1|CV035953 RTNACL1_43_D05.g1_A029 Roots plus ad... 40 0.13
gb|DR098653.1|DR098653 STRR1_47_B04.b1_A033 Stem Response R... 40 0.13
gb|CF397476.1|CF397476 RTDS3_3_E07.g1_A022 Drought-stressed... 38 0.49
>gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 3', mRNA sequence
Length = 723
Score = 93.7 bits (47), Expect = 1e-017
Identities = 194/243 (79%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || ||||||||||| || |||||
Sbjct: 122 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagtgtgaaaaacaa 181
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 182 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 241
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 242 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 301
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 302 gacaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaat 361
Query: 447 gtt 449
|||
Sbjct: 362 gtt 364
>gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 5', mRNA sequence
Length = 712
Score = 93.7 bits (47), Expect = 1e-017
Identities = 194/243 (79%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || ||||||||||| || |||||
Sbjct: 91 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagtgtgaaaaacaa 150
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 151 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 210
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 211 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 270
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 271 gacaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaat 330
Query: 447 gtt 449
|||
Sbjct: 331 gtt 333
>gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001F10, mRNA sequence
Length = 665
Score = 87.7 bits (44), Expect = 6e-016
Identities = 193/243 (79%)
Strand = Plus / Minus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || ||||||||||| || |||||
Sbjct: 627 agaggaggaggaattcaatactggtcctctntctgttctcatgatgagtgtgaaaaacaa 568
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 567 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 508
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||| ||| | || ||
Sbjct: 507 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacggaggttccaaa 448
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 447 gacaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaat 388
Query: 447 gtt 449
|||
Sbjct: 387 gtt 385
>gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA clone 2N8E, mRNA sequence
Length = 719
Score = 85.7 bits (43), Expect = 2e-015
Identities = 193/243 (79%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || |||||||| || || |||||
Sbjct: 123 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaa 182
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 183 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 242
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 243 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 302
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 303 gacaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaat 362
Query: 447 gtt 449
|||
Sbjct: 363 gtt 365
>gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clone RS11G12, mRNA sequence
Length = 608
Score = 85.7 bits (43), Expect = 2e-015
Identities = 193/243 (79%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || ||||||||||| || |||||
Sbjct: 139 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagtgtgaaaaacaa 198
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 199 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 258
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||| ||| | || ||
Sbjct: 259 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacggaggttccaaa 318
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 319 gacaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaat 378
Query: 447 gtt 449
|||
Sbjct: 379 gtt 381
>gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 3', mRNA sequence
Length = 853
Score = 85.7 bits (43), Expect = 2e-015
Identities = 193/243 (79%)
Strand = Plus / Minus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || |||||||| || || |||||
Sbjct: 459 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaa 400
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 399 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 340
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 339 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 280
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 279 gacaggtaaaggcaagaagaaagctcagcctgttaacaaggataggttcatcagcaaaat 220
Query: 447 gtt 449
|||
Sbjct: 219 gtt 217
>gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 5', mRNA sequence
Length = 913
Score = 85.7 bits (43), Expect = 2e-015
Identities = 193/243 (79%)
Strand = Plus / Minus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || |||||||| || || |||||
Sbjct: 548 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaa 489
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 488 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 429
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 428 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 369
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 368 gacaggtaaaggcaagaagaaagctcagcctgttaacaaggataggttcatcagcaaaat 309
Query: 447 gtt 449
|||
Sbjct: 308 gtt 306
>gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_A11_A034 3', mRNA sequence
Length = 811
Score = 85.7 bits (43), Expect = 2e-015
Identities = 193/243 (79%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || |||||||| || || |||||
Sbjct: 211 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaa 270
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 271 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 330
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 331 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 390
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 391 gacaggtaaaggcaagaagaaagctcagcctgttaacaaggataggttcatcagcaaaat 450
Query: 447 gtt 449
|||
Sbjct: 451 gtt 453
>gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23B03, mRNA sequence
Length = 589
Score = 77.8 bits (39), Expect = 6e-013
Identities = 192/243 (79%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || | |||||||| || || |||||
Sbjct: 147 agaggaggaggaattcaatactggtcctctttctgttcccatgatgagcgtgaaaaacaa 206
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 207 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 266
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 267 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 326
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagat 446
||| || || ||||| ||||| |||| |||||| ||||||||||| |||||||| || ||
Sbjct: 327 gacaggtaaaggcaagaagaaagctcagcctgtcaacaaggataggttcatcagcaaaat 386
Query: 447 gtt 449
|||
Sbjct: 387 gtt 389
>gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5', mRNA sequence
Length = 380
Score = 61.9 bits (31), Expect = 3e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||||||| | || ||||| || || ||||| ||||| |||| |||||| ||||||
Sbjct: 27 atgtggacagaggttccaaagacaggtaaaggcaagaagaaagctcagcctgttaacaag 86
Query: 427 gatagattcatcagtaagatgtt 449
||||| |||||||| || |||||
Sbjct: 87 gataggttcatcagcaaaatgtt 109
>gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV061_D02 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 548
Score = 61.9 bits (31), Expect = 3e-008
Identities = 181/232 (78%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || |||||||| || || |||||
Sbjct: 189 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaa 248
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 249 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 308
Query: 327 tgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaa 386
|||| | ||||| |||||||| | ||||| || || |||||||||||| | || ||
Sbjct: 309 tgataggcactgcaacatggttttggagaatgtcaaagaaatgtggacagaggttccaaa 368
Query: 387 gactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatc 438
||| || || ||||| ||||| |||| |||||| |||| |||| ||||||
Sbjct: 369 gacaggtaaaggcaagaagaaagctcagcctgttaacannnataggttcatc 420
>gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5' similar to Arabidopsis thaliana sequence
At3g62840 small nuclear ribonucleoprotein-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 61.9 bits (31), Expect = 3e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||||||| | || ||||| || || ||||| ||||| |||| |||||| ||||||
Sbjct: 27 atgtggacagaggttccaaagacaggtaaaggcaagaagaaagctcagcctgttaacaag 86
Query: 427 gatagattcatcagtaagatgtt 449
||||| |||||||| || |||||
Sbjct: 87 gataggttcatcagcaaaatgtt 109
>gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_C06_A029 5', mRNA sequence
Length = 642
Score = 58.0 bits (29), Expect = 5e-007
Identities = 113/141 (80%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || |||||||| || || |||||
Sbjct: 193 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaa 252
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 253 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 312
Query: 327 tgatcgccactgtaacatggt 347
|||| | ||||| ||||||||
Sbjct: 313 tgataggcactgcaacatggt 333
Score = 56.0 bits (28), Expect = 2e-006
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 367 atgtggacagagatccccaa-gactggcaagggcaaaaagaaggctctgcctgtgaacaa 425
|||||||||||| | ||||| ||| || || ||||| ||||| |||| |||||| |||||
Sbjct: 356 atgtggacagaggttcccaaagacaggtaaaggcaagaagaaagctcagcctgttaacaa 415
Query: 426 ggatagattcatcagtaagatgtt 449
|||||| |||||||| || |||||
Sbjct: 416 ggataggttcatcagcaaaatgtt 439
>gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 3', mRNA sequence
Length = 571
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 421 aacaaggatagattcatcagtaagatgttcctcaggggcgactc 464
||||||||| |||||||||| || |||||||||||||| |||||
Sbjct: 282 aacaaggatcgattcatcagcaaaatgttcctcaggggtgactc 325
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
||||||||||| ||||||||| |||||||||||||||||
Sbjct: 213 aacatggtgcttgagaacgtgaaggagatgtggacagagat 253
>gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 5', mRNA sequence
Length = 536
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 421 aacaaggatagattcatcagtaagatgttcctcaggggcgactc 464
||||||||| |||||||||| || |||||||||||||| |||||
Sbjct: 250 aacaaggatcgattcatcagcaaaatgttcctcaggggtgactc 293
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
||||||||||| ||||||||| |||||||||||||||||
Sbjct: 181 aacatggtgcttgagaacgtgaaggagatgtggacagagat 221
>gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_F11 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 361
Score = 54.0 bits (27), Expect = 8e-006
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 207 agaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaa 266
||||||||||||||| | || || ||||| || || || |||||||| || || |||||
Sbjct: 145 agaggaggaggaattcaatactggtcctctttctgttctcatgatgagcgtgaaaaacaa 204
Query: 267 cacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttt 326
|| ||||| || ||||||||| | |||||||| ||||| ||||| || ||| | || ||
Sbjct: 205 tacacaggttctgatcaattgcagaaacaacaaaaagcttcttgggcgagttagagcatt 264
Query: 327 tgatcgccactgtaacatggt 347
|||| ||||| ||||||||
Sbjct: 265 tgatanncactgcaacatggt 285
>gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clone AS01C06 similar to SNRP, mRNA
sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.032
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 400 aaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
||||| || |||| |||||| ||||||||||| ||||||||
Sbjct: 427 aaaaaaaaagctcagcctgtcaacaaggataggttcatcag 387
>gb|BX255648.1|BX255648 BX255648 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP008B04 similar to ACTIN, mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 446 tgttcctcaggggcgactcgg 466
|||||||||||||||||||||
Sbjct: 433 tgttcctcaggggcgactcgg 413
>gb|BF518224.1|BF518224 NXSI_036_E08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_036_E08 5' similar to Arabidopsis thaliana
sequence At5g09810 ACTIN 2/7 (sp|P53492) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 446 tgttcctcaggggcgactcgg 466
|||||||||||||||||||||
Sbjct: 41 tgttcctcaggggcgactcgg 21
>gb|BM133883.1|BM133883 NXLV_013_F02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_013_F02 5' similar to Arabidopsis thaliana
sequence At5g09810 ACTIN 2/7 (sp|P53492) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 446 tgttcctcaggggcgactcgg 466
|||||||||||||||||||||
Sbjct: 169 tgttcctcaggggcgactcgg 149
>gb|BQ698859.1|BQ698859 NXRV116_C09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV116_C09 5' similar to Arabidopsis thaliana
sequence At5g09810 ACTIN 2/7 (sp|P53492) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 446 tgttcctcaggggcgactcgg 466
|||||||||||||||||||||
Sbjct: 54 tgttcctcaggggcgactcgg 34
>gb|CO157902.1|CO157902 FLD1_3_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_3_A08_A029 3', mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 446 tgttcctcaggggcgactcgg 466
|||||||||||||||||||||
Sbjct: 235 tgttcctcaggggcgactcgg 255
>gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clone AS01G04 similar to SNRP, mRNA
sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.13
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|||||||| || || ||| | ||||| |||| ||| || ||||||||||| ||||||||
Sbjct: 444 cccaagacaggtaaaggccagaagaaagctcagcccgtcaacaaggataggttcatcagc 385
Query: 442 aagatgtt 449
|| |||||
Sbjct: 384 aaaatgtt 377
>gb|CV035953.1|CV035953 RTNACL1_43_D05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_43_D05_A029 5', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 gctggaaagaaagaggagga 215
||||||||||||||||||||
Sbjct: 431 gctggaaagaaagaggagga 450
>gb|DR098653.1|DR098653 STRR1_47_B04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_47_B04_A033 3', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 gctggaaagaaagaggagga 215
||||||||||||||||||||
Sbjct: 256 gctggaaagaaagaggagga 275
>gb|CF397476.1|CF397476 RTDS3_3_E07.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_E07_A022 5', mRNA sequence
Length = 701
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 448 ttcctcaggggcgactcgg 466
|||||||||||||||||||
Sbjct: 26 ttcctcaggggcgactcgg 8
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,568
Number of Sequences: 355925
Number of extensions: 88568
Number of successful extensions: 23978
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23938
Number of HSP's gapped (non-prelim): 39
length of query: 739
length of database: 217,277,237
effective HSP length: 19
effective length of query: 720
effective length of database: 210,514,662
effective search space: 151570556640
effective search space used: 151570556640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)