BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus ad... 109 2e-022
gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus ad... 109 2e-022
gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciat... 103 9e-021
gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA ... 101 4e-020
gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone lib... 101 4e-020
gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clon... 101 4e-020
gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch... 101 4e-020
gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch... 101 4e-020
gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch... 101 4e-020
gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Ve... 78 5e-013
gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Ver... 78 5e-013
gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control ... 72 3e-011
gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root w... 70 1e-010
gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus adde... 64 8e-009
gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus adde... 64 8e-009
gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clon... 54 8e-006
gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clon... 44 0.007
gb|BX255648.1|BX255648 BX255648 Pinus pinaster differenciat... 42 0.029
gb|BF518224.1|BF518224 NXSI_036_E08_F NXSI (Nsf Xylem Side ... 42 0.029
gb|BM133883.1|BM133883 NXLV_013_F02_F NXLV (Nsf Xylem Late ... 42 0.029
gb|BQ698859.1|BQ698859 NXRV116_C09_F NXRV (Nsf Xylem Root w... 42 0.029
gb|CO157902.1|CO157902 FLD1_3_A08.b1_A029 Root flooded Pinu... 42 0.029
gb|CF397476.1|CF397476 RTDS3_3_E07.g1_A022 Drought-stressed... 38 0.46
>gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 3', mRNA sequence
Length = 723
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 364 aacattttgctgatgaacctatccttgttgacaggctgagctttcttcttgcctttacct 305
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || |||||||||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 304 gtctttggaacctctgtccacatttctttgacattctccaaaaccatgttgcagtgccta 245
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 244 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 185
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || |||||||||||
Sbjct: 184 gtattgtttttcacactcatcat 162
>gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 5', mRNA sequence
Length = 712
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 333 aacattttgctgatgaacctatccttgttgacaggctgagctttcttcttgcctttacct 274
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || |||||||||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 273 gtctttggaacctctgtccacatttctttgacattctccaaaaccatgttgcagtgccta 214
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 213 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 154
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || |||||||||||
Sbjct: 153 gtattgtttttcacactcatcat 131
>gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001F10, mRNA sequence
Length = 665
Score = 103 bits (52), Expect = 9e-021
Identities = 195/243 (80%)
Strand = Plus / Plus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 385 aacattttgctgatgaacctatccttgttgacaggctgagctttcttcttgcctttacct 444
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || ||||| |||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 445 gtctttggaacctccgtccacatttctttgacattctccaaaaccatgttgcagtgccta 504
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 505 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 564
Query: 518 gtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattcctcttcc 577
|| ||||| || ||||||||||| || || || ||||| || || | |||||||| |||
Sbjct: 565 gtattgtttttcacactcatcatgagaacaganagaggaccagtattgaattcctcctcc 624
Query: 578 tct 580
|||
Sbjct: 625 tct 627
>gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA clone 2N8E, mRNA sequence
Length = 719
Score = 101 bits (51), Expect = 4e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 365 aacattttgctgatgaacctatccttgttgacaggctgagctttcttcttgcctttacct 306
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || |||||||||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 305 gtctttggaacctctgtccacatttctttgacattctccaaaaccatgttgcagtgccta 246
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 245 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 186
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || || ||||||||
Sbjct: 185 gtattgtttttcacgctcatcat 163
>gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23B03, mRNA sequence
Length = 589
Score = 101 bits (51), Expect = 4e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 389 aacattttgctgatgaacctatccttgttgacaggctgagctttcttcttgcctttacct 330
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || |||||||||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 329 gtctttggaacctctgtccacatttctttgacattctccaaaaccatgttgcagtgccta 270
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 269 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 210
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || || ||||||||
Sbjct: 209 gtattgtttttcacgctcatcat 187
>gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clone RS11G12, mRNA sequence
Length = 608
Score = 101 bits (51), Expect = 4e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 381 aacattttgctgatgaacctatccttgttgacaggctgagctttcttcttgcctttacct 322
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || ||||| |||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 321 gtctttggaacctccgtccacatttctttgacattctccaaaaccatgttgcagtgccta 262
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 261 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 202
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || |||||||||||
Sbjct: 201 gtattgtttttcacactcatcat 179
>gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 3', mRNA sequence
Length = 853
Score = 101 bits (51), Expect = 4e-020
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 217 aacattttgctgatgaacctatccttgttaacaggctgagctttcttcttgcctttacct 276
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || |||||||||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 277 gtctttggaacctctgtccacatttctttgacattctccaaaaccatgttgcagtgccta 336
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 337 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 396
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || || ||||||||
Sbjct: 397 gtattgtttttcacgctcatcat 419
>gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 5', mRNA sequence
Length = 913
Score = 101 bits (51), Expect = 4e-020
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 306 aacattttgctgatgaacctatccttgttaacaggctgagctttcttcttgcctttacct 365
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || |||||||||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 366 gtctttggaacctctgtccacatttctttgacattctccaaaaccatgttgcagtgccta 425
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 426 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 485
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || || ||||||||
Sbjct: 486 gtattgtttttcacgctcatcat 508
>gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_A11_A034 3', mRNA sequence
Length = 811
Score = 101 bits (51), Expect = 4e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 453 aacattttgctgatgaacctatccttgttaacaggctgagctttcttcttgcctttacct 394
Query: 398 gtcttggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcga 457
||||| || |||||||||||||| || || ||||| | |||||||| ||||| | |
Sbjct: 393 gtctttggaacctctgtccacatttctttgacattctccaaaaccatgttgcagtgccta 334
Query: 458 tcaaaagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgg 517
||||| || | ||| || ||||| ||||| |||||||| | ||||||||| ||||||||
Sbjct: 333 tcaaatgctctaactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgt 274
Query: 518 gtgttgttcttaacactcatcat 540
|| ||||| || || ||||||||
Sbjct: 273 gtattgtttttcacgctcatcat 251
>gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5', mRNA sequence
Length = 380
Score = 77.8 bits (39), Expect = 5e-013
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 109 aacattttgctgatgaacctatccttgttaacaggctgagctttcttcttgcctttacct 50
Query: 398 gtcttggggacctctgtccacat 420
||||| || ||||||||||||||
Sbjct: 49 gtctttggaacctctgtccacat 27
>gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5' similar to Arabidopsis thaliana sequence
At3g62840 small nuclear ribonucleoprotein-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 77.8 bits (39), Expect = 5e-013
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 109 aacattttgctgatgaacctatccttgttaacaggctgagctttcttcttgcctttacct 50
Query: 398 gtcttggggacctctgtccacat 420
||||| || ||||||||||||||
Sbjct: 49 gtctttggaacctctgtccacat 27
>gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_C06_A029 5', mRNA sequence
Length = 642
Score = 71.9 bits (36), Expect = 3e-011
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||| || ||
Sbjct: 439 aacattttgctgatgaacctatccttgttaacaggctgagctttcttcttgcctttacct 380
Query: 398 gtc-ttggggacctctgtccacat 420
||| ||||| ||||||||||||||
Sbjct: 379 gtctttgggaacctctgtccacat 356
>gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV061_D02 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 548
Score = 69.9 bits (35), Expect = 1e-010
Identities = 152/192 (79%)
Strand = Plus / Minus
Query: 349 gatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtcttggggac 408
|||||| |||| |||| |||||| |||| ||||| ||||| || || ||||| || ||
Sbjct: 420 gatgaacctatnnntgttaacaggctgagctttcttcttgcctttacctgtctttggaac 361
Query: 409 ctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacg 468
|||||||||||| || || ||||| | |||||||| ||||| | |||||| || |
Sbjct: 360 ctctgtccacatttctttgacattctccaaaaccatgttgcagtgcctatcaaatgctct 301
Query: 469 aacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttctt 528
||| || ||||| ||||| |||||||| | ||||||||| |||||||| || ||||| ||
Sbjct: 300 aactcgcccaagaagctttttgttgtttctgcaattgatcagaacctgtgtattgttttt 241
Query: 529 aacactcatcat 540
|| ||||||||
Sbjct: 240 cacgctcatcat 229
>gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 3', mRNA sequence
Length = 571
Score = 63.9 bits (32), Expect = 8e-009
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 323 gagtcgcccctgaggaacatcttgctgatgaatctatccttgtt 366
||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct: 325 gagtcacccctgaggaacattttgctgatgaatcgatccttgtt 282
Score = 54.0 bits (27), Expect = 8e-006
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 409 ctctgtccacatctcccgcacgttctcgagcaccatgtt 447
|||||||||||||||| ||||||||| |||||||||||
Sbjct: 251 ctctgtccacatctccttcacgttctcaagcaccatgtt 213
>gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 5', mRNA sequence
Length = 536
Score = 63.9 bits (32), Expect = 8e-009
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 323 gagtcgcccctgaggaacatcttgctgatgaatctatccttgtt 366
||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct: 293 gagtcacccctgaggaacattttgctgatgaatcgatccttgtt 250
Score = 54.0 bits (27), Expect = 8e-006
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 409 ctctgtccacatctcccgcacgttctcgagcaccatgtt 447
|||||||||||||||| ||||||||| |||||||||||
Sbjct: 219 ctctgtccacatctccttcacgttctcaagcaccatgtt 181
>gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clone AS01G04 similar to SNRP, mRNA
sequence
Length = 616
Score = 54.0 bits (27), Expect = 8e-006
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 338 aacatcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgcca 397
||||| ||||||||||| ||||||||||| || ||| |||| ||||| | ||| || ||
Sbjct: 377 aacattttgctgatgaacctatccttgttgacgggctgagctttcttctggcctttacct 436
Query: 398 gtcttggggacctctgtccacat 420
|||||||| ||||| | ||||||
Sbjct: 437 gtcttgggaacctccgaccacat 459
>gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clone AS01C06 similar to SNRP, mRNA
sequence
Length = 618
Score = 44.1 bits (22), Expect = 0.007
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 346 gctgatgaatctatccttgttcacaggcagagccttcttttt 387
||||||||| ||||||||||| |||||| |||| || |||||
Sbjct: 386 gctgatgaacctatccttgttgacaggctgagcttttttttt 427
>gb|BX255648.1|BX255648 BX255648 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP008B04 similar to ACTIN, mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 321 ccgagtcgcccctgaggaaca 341
|||||||||||||||||||||
Sbjct: 413 ccgagtcgcccctgaggaaca 433
>gb|BF518224.1|BF518224 NXSI_036_E08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_036_E08 5' similar to Arabidopsis thaliana
sequence At5g09810 ACTIN 2/7 (sp|P53492) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 321 ccgagtcgcccctgaggaaca 341
|||||||||||||||||||||
Sbjct: 21 ccgagtcgcccctgaggaaca 41
>gb|BM133883.1|BM133883 NXLV_013_F02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_013_F02 5' similar to Arabidopsis thaliana
sequence At5g09810 ACTIN 2/7 (sp|P53492) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 321 ccgagtcgcccctgaggaaca 341
|||||||||||||||||||||
Sbjct: 149 ccgagtcgcccctgaggaaca 169
>gb|BQ698859.1|BQ698859 NXRV116_C09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV116_C09 5' similar to Arabidopsis thaliana
sequence At5g09810 ACTIN 2/7 (sp|P53492) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 321 ccgagtcgcccctgaggaaca 341
|||||||||||||||||||||
Sbjct: 34 ccgagtcgcccctgaggaaca 54
>gb|CO157902.1|CO157902 FLD1_3_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_3_A08_A029 3', mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 321 ccgagtcgcccctgaggaaca 341
|||||||||||||||||||||
Sbjct: 255 ccgagtcgcccctgaggaaca 235
>gb|CF397476.1|CF397476 RTDS3_3_E07.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_E07_A022 5', mRNA sequence
Length = 701
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 321 ccgagtcgcccctgaggaa 339
|||||||||||||||||||
Sbjct: 8 ccgagtcgcccctgaggaa 26
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,844
Number of Sequences: 355925
Number of extensions: 79844
Number of successful extensions: 25011
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24978
Number of HSP's gapped (non-prelim): 32
length of query: 687
length of database: 217,277,237
effective HSP length: 19
effective length of query: 668
effective length of database: 210,514,662
effective search space: 140623794216
effective search space used: 140623794216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)