BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN613889.1|DN613889 EST966939 Subtracted pine embryo lib... 40 0.10
gb|DN614173.1|DN614173 EST967223 Subtracted pine embryo lib... 40 0.10
gb|DT629126.1|DT629126 EST1155696 Subtracted pine embryo li... 40 0.10
gb|DN609659.1|DN609659 EST962709 Subtracted pine embryo lib... 38 0.41
gb|DN609756.1|DN609756 EST962806 Subtracted pine embryo lib... 38 0.41
gb|DN610887.1|DN610887 EST963937 Subtracted pine embryo lib... 38 0.41
gb|DN614992.1|DN614992 EST968042 Subtracted pine embryo lib... 38 0.41
gb|DT627965.1|DT627965 EST1156714 Subtracted pine embryo li... 38 0.41
gb|DT628781.1|DT628781 EST1155351 Subtracted pine embryo li... 38 0.41
gb|DT628979.1|DT628979 EST1155549 Subtracted pine embryo li... 38 0.41
gb|DT629255.1|DT629255 EST1155825 Subtracted pine embryo li... 38 0.41
>gb|DN613889.1|DN613889 EST966939 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABX58, mRNA sequence
Length = 319
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccggcaggtacg 20
||||||||||||||||||||
Sbjct: 314 gcggccgcccggcaggtacg 295
>gb|DN614173.1|DN614173 EST967223 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC091, mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccggcaggtacg 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccggcaggtacg 24
>gb|DT629126.1|DT629126 EST1155696 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD588 5' end, mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccggcaggtacg 20
||||||||||||||||||||
Sbjct: 437 gcggccgcccggcaggtacg 418
>gb|DN609659.1|DN609659 EST962709 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAF58, mRNA sequence
Length = 268
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 5 gcggccgcccggcaggtac 23
>gb|DN609756.1|DN609756 EST962806 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAH07, mRNA sequence
Length = 268
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 5 gcggccgcccggcaggtac 23
>gb|DN610887.1|DN610887 EST963937 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAV26, mRNA sequence
Length = 293
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 288 gcggccgcccggcaggtac 270
>gb|DN614992.1|DN614992 EST968042 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSACA55, mRNA sequence
Length = 293
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 288 gcggccgcccggcaggtac 270
>gb|DT627965.1|DT627965 EST1156714 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCS71 5' end, mRNA sequence
Length = 639
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 6 gcggccgcccggcaggtac 24
>gb|DT628781.1|DT628781 EST1155351 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD191 5' end, mRNA sequence
Length = 639
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 6 gcggccgcccggcaggtac 24
>gb|DT628979.1|DT628979 EST1155549 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD423 5' end, mRNA sequence
Length = 738
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 6 gcggccgcccggcaggtac 24
>gb|DT629255.1|DT629255 EST1155825 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD732 5' end, mRNA sequence
Length = 571
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccggcaggtac 19
|||||||||||||||||||
Sbjct: 6 gcggccgcccggcaggtac 24
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,521
Number of Sequences: 355925
Number of extensions: 72521
Number of successful extensions: 20360
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20347
Number of HSP's gapped (non-prelim): 13
length of query: 622
length of database: 217,277,237
effective HSP length: 19
effective length of query: 603
effective length of database: 210,514,662
effective search space: 126940341186
effective search space used: 126940341186
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)