BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131554.2.6
(761 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO409817.1|CO409817 EST840202 Sequencing ESTs from loblo... 196 9e-049
gb|DR021241.1|DR021241 STRS1_43_G06.b1_A034 Shoot tip pitch... 196 9e-049
gb|DR021318.1|DR021318 STRS1_43_G06.g1_A034 Shoot tip pitch... 196 9e-049
gb|DT625715.1|DT625715 EST1157639 Sequencing ESTs from lobl... 196 9e-049
gb|CV138874.1|CV138874 EST850083 Sequencing ESTs from loblo... 188 2e-046
gb|DT626552.1|DT626552 EST1158476 Sequencing ESTs from lobl... 188 2e-046
gb|DR695094.1|DR695094 EST1085187 Normalized pine embryo li... 157 8e-037
gb|CX651136.1|CX651136 COLD1_50_H10.b1_A029 Root cold Pinus... 137 7e-031
gb|BQ702461.1|BQ702461 NXSI_128_H07_F NXSI (Nsf Xylem Side ... 133 1e-029
gb|DT639072.1|DT639072 EST1154003 Normalized pine embryo li... 133 1e-029
gb|AW697623.1|AW697623 ST64F01 Pine TriplEx shoot tip libra... 117 7e-025
gb|BE656925.1|BE656925 NXCI_058_C02_F NXCI (Nsf Xylem Compr... 117 7e-025
gb|BX679718.1|BX679718 BX679718 RS Pinus pinaster cDNA clon... 115 3e-024
gb|BG319305.1|BG319305 NXPV_026_D08_F NXPV (Nsf Xylem Plani... 113 1e-023
gb|CF388178.1|CF388178 RTDR2_1_G07.g1_A021 Loblolly pine ro... 109 2e-022
gb|DR682322.1|DR682322 EST1072397 Normalized pine embryo li... 100 2e-019
gb|DT630968.1|DT630968 EST1145899 Normalized pine embryo li... 100 2e-019
gb|BF169847.1|BF169847 NXCI_127_B02_F NXCI (Nsf Xylem Compr... 96 3e-018
gb|DR015433.1|DR015433 STRS1_3_B05.g1_A034 Shoot tip pitch ... 94 1e-017
gb|BG625837.1|BG625837 NXPV_066_F07_F NXPV (Nsf Xylem Plani... 92 4e-017
gb|CX715301.1|CX715301 RTPQ1_33_F02.b1_A032 Roots treated w... 84 1e-014
gb|BF169426.1|BF169426 NXCI_121_A11_F NXCI (Nsf Xylem Compr... 78 6e-013
gb|DN457774.1|DN457774 EST953573 Sequencing ESTs from loblo... 78 6e-013
gb|DT625321.1|DT625321 EST1159596 Sequencing ESTs from lobl... 78 6e-013
gb|DR694482.1|DR694482 EST1084574 Normalized pine embryo li... 76 2e-012
gb|BM367468.1|BM367468 NXLV_049_F09_F NXLV (Nsf Xylem Late ... 70 1e-010
gb|BF169747.1|BF169747 NXCI_128_F03_F NXCI (Nsf Xylem Compr... 68 6e-010
gb|AW754808.1|AW754808 PC05G03 Pine TriplEx pollen cone lib... 62 4e-008
gb|DR687391.1|DR687391 EST1077473 Normalized pine embryo li... 62 4e-008
gb|DT634048.1|DT634048 EST1148979 Normalized pine embryo li... 62 4e-008
gb|CD016241.1|CD016241 NXCI_026_G04_F NXCI (Nsf Xylem Compr... 58 5e-007
gb|DN611308.1|DN611308 EST964358 Subtracted pine embryo lib... 58 5e-007
gb|DT638657.1|DT638657 EST1153588 Normalized pine embryo li... 58 5e-007
gb|DT628140.1|DT628140 EST1156889 Subtracted pine embryo li... 56 2e-006
gb|CF470949.1|CF470949 RTDS1_15_A11.g1_A015 Drought-stresse... 54 9e-006
gb|CV146683.1|CV146683 EST857892 Sequencing ESTs from loblo... 54 9e-006
gb|CX652743.1|CX652743 COLD1_61_E04.b1_A029 Root cold Pinus... 54 9e-006
gb|CX652822.1|CX652822 COLD1_61_E04.g1_A029 Root cold Pinus... 54 9e-006
gb|CX652935.1|CX652935 COLD1_62_H12.b1_A029 Root cold Pinus... 54 9e-006
gb|CX653021.1|CX653021 COLD1_62_H12.g1_A029 Root cold Pinus... 54 9e-006
gb|DT624924.1|DT624924 EST1159199 Sequencing ESTs from lobl... 54 9e-006
gb|AW064813.1|AW064813 ST36B01 Pine TriplEx shoot tip libra... 52 3e-005
gb|BX254626.1|BX254626 BX254626 Pinus pinaster differenciat... 52 3e-005
gb|BX679616.1|BX679616 BX679616 RS Pinus pinaster cDNA clon... 52 3e-005
gb|BX249832.1|BX249832 BX249832 Pinus pinaster differenciat... 50 1e-004
gb|BX255101.1|BX255101 BX255101 Pinus pinaster differenciat... 50 1e-004
gb|DR089686.1|DR089686 RTAL1_10_E09.b1_A029 Roots plus adde... 48 5e-004
gb|DR089771.1|DR089771 RTAL1_10_E09.g1_A029 Roots plus adde... 48 5e-004
gb|AL750508.1|AL750508 AL750508 RN Pinus pinaster cDNA clon... 44 0.008
gb|BX254770.1|BX254770 BX254770 Pinus pinaster differenciat... 44 0.008
gb|BX677355.1|BX677355 BX677355 RN Pinus pinaster cDNA clon... 44 0.008
gb|DR012144.1|DR012144 HEAT1_10_B07.g1_A029 Root at 37 C fo... 44 0.008
gb|BQ197708.1|BQ197708 NXLV119_H02_F NXLV (Nsf Xylem Late w... 42 0.033
gb|DR068783.1|DR068783 RTDK1_2_H02.g1_A029 Roots, dark Pinu... 42 0.033
gb|BX250390.1|BX250390 BX250390 Pinus pinaster differenciat... 40 0.13
gb|BQ634147.1|BQ634147 NXRV064_D02_F NXRV (Nsf Xylem Root w... 40 0.13
gb|CF476378.1|CF476378 RTWW2_22_C03.g1_A021 Well-watered lo... 40 0.13
>gb|CO409817.1|CO409817 EST840202 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKU91 5' end, mRNA sequence
Length = 742
Score = 196 bits (99), Expect = 9e-049
Identities = 258/311 (82%)
Strand = Plus / Minus
Query: 376 ccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcg 435
||||| |||||||||||||| | |||||| | ||||||||| ||||||||||||||||||
Sbjct: 399 ccgccaaagccgtagagggttctgccctgcctcttgagcgcatagacgacatccatggcg 340
Query: 436 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctcc 495
||||| |||||||| | |||||||| ||||| || |||||||| | ||||| ||||||
Sbjct: 339 gtgacagtcttgcgccttgcgtgctcagtgtaagtaacggcgtctctaatgacattctcc 280
Query: 496 agaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacg 555
| ||||||||| | || || | ||||| ||||||||||||||| ||| ||||| ||
Sbjct: 279 aaaaagatcttcaagactcccctcgtctcttcgtagatgagcccgctgatacgctttact 220
Query: 556 ccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgc 615
|| ||||||||||| || | | ||| ||||| |||||||||||||| ||||| || | |
Sbjct: 219 cctcccctcctagcgagacgtctgatggccggtttggtgatgccctgaatgttatccctc 160
Query: 616 aggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgc 675
|| ||||| | ||| | ||||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 159 agcaccttcctgtgcctcttggcgcctccctttcccaaacccttaccgcccttgccgcgc 100
Query: 676 cccgacattgt 686
|| ||||||||
Sbjct: 99 ccagacattgt 89
>gb|DR021241.1|DR021241 STRS1_43_G06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_43_G06_A034 3', mRNA sequence
Length = 745
Score = 196 bits (99), Expect = 9e-049
Identities = 258/311 (82%)
Strand = Plus / Minus
Query: 376 ccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcg 435
||||| |||||||||||||| | |||||| | ||||||||| ||||||||||||||||||
Sbjct: 398 ccgccaaagccgtagagggttctgccctgcctcttgagcgcatagacgacatccatggcg 339
Query: 436 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctcc 495
||||| |||||||| | |||||||| ||||| || |||||||| | ||||| ||||||
Sbjct: 338 gtgacagtcttgcgccttgcgtgctcagtgtaagtaacggcgtctctaatgacattctcc 279
Query: 496 agaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacg 555
| ||||||||| | || || | ||||| ||||||||||||||| ||| ||||| ||
Sbjct: 278 aaaaagatcttcaagactcccctcgtctcttcgtagatgagcccgctgatacgctttact 219
Query: 556 ccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgc 615
|| ||||||||||| || | | ||| ||||| |||||||||||||| ||||| || | |
Sbjct: 218 cctcccctcctagcgagacgtctgatggccggtttggtgatgccctgaatgttatccctc 159
Query: 616 aggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgc 675
|| ||||| | ||| | ||||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 158 agcaccttcctgtgcctcttggcgcctccctttcccaaacccttaccgcccttgccgcgc 99
Query: 676 cccgacattgt 686
|| ||||||||
Sbjct: 98 ccagacattgt 88
>gb|DR021318.1|DR021318 STRS1_43_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_43_G06_A034 5', mRNA sequence
Length = 515
Score = 196 bits (99), Expect = 9e-049
Identities = 258/311 (82%)
Strand = Plus / Minus
Query: 376 ccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcg 435
||||| |||||||||||||| | |||||| | ||||||||| ||||||||||||||||||
Sbjct: 361 ccgccaaagccgtagagggttctgccctgcctcttgagcgcatagacgacatccatggcg 302
Query: 436 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctcc 495
||||| |||||||| | |||||||| ||||| || |||||||| | ||||| ||||||
Sbjct: 301 gtgacagtcttgcgccttgcgtgctcagtgtaagtaacggcgtctctaatgacattctcc 242
Query: 496 agaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacg 555
| ||||||||| | || || | ||||| ||||||||||||||| ||| ||||| ||
Sbjct: 241 aaaaagatcttcaagactcccctcgtctcttcgtagatgagcccgctgatacgctttact 182
Query: 556 ccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgc 615
|| ||||||||||| || | | ||| ||||| |||||||||||||| ||||| || | |
Sbjct: 181 cctcccctcctagcgagacgtctgatggccggtttggtgatgccctgaatgttatccctc 122
Query: 616 aggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgc 675
|| ||||| | ||| | ||||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 121 agcaccttcctgtgcctcttggcgcctccctttcccaaacccttaccgcccttgccgcgc 62
Query: 676 cccgacattgt 686
|| ||||||||
Sbjct: 61 ccagacattgt 51
>gb|DT625715.1|DT625715 EST1157639 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA292 5' end, mRNA sequence
Length = 746
Score = 196 bits (99), Expect = 9e-049
Identities = 258/311 (82%)
Strand = Plus / Minus
Query: 376 ccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcg 435
||||| |||||||||||||| | |||||| | ||||||||| ||||||||||||||||||
Sbjct: 399 ccgccaaagccgtagagggttctgccctgcctcttgagcgcatagacgacatccatggcg 340
Query: 436 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctcc 495
||||| |||||||| | |||||||| ||||| || |||||||| | ||||| ||||||
Sbjct: 339 gtgacagtcttgcgccttgcgtgctcagtgtaagtaacggcgtctctaatgacattctcc 280
Query: 496 agaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacg 555
| ||||||||| | || || | ||||| ||||||||||||||| ||| ||||| ||
Sbjct: 279 aaaaagatcttcaagactcccctcgtctcttcgtagatgagcccgctgatacgctttact 220
Query: 556 ccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgc 615
|| ||||||||||| || | | ||| ||||| |||||||||||||| ||||| || | |
Sbjct: 219 cctcccctcctagcgagacgtctgatggccggtttggtgatgccctgaatgttatccctc 160
Query: 616 aggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgc 675
|| ||||| | ||| | ||||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 159 agcaccttcctgtgcctcttggcgcctccctttcccaaacccttaccgcccttgccgcgc 100
Query: 676 cccgacattgt 686
|| ||||||||
Sbjct: 99 ccagacattgt 89
>gb|CV138874.1|CV138874 EST850083 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB830 5' end, mRNA sequence
Length = 749
Score = 188 bits (95), Expect = 2e-046
Identities = 257/311 (82%)
Strand = Plus / Minus
Query: 376 ccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcg 435
||||| |||||||||||||| | |||||| | ||||||||| ||||||||||||||||||
Sbjct: 397 ccgccaaagccgtagagggttctgccctgcctcttgagcgcatagacgacatccatggcg 338
Query: 436 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctcc 495
||||| |||||||| | |||||||| ||||| || |||||||| | ||||| ||||||
Sbjct: 337 gtgacagtcttgcgccttgcgtgctcagtgtaagtaacggcgtctctaatgacattctcc 278
Query: 496 agaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacg 555
| ||||||||| | || || | ||||| ||||||||||||||| ||| ||||| ||
Sbjct: 277 aaaaagatcttcaagactcccctcgtctcttcgtagatgagcccgctgatacgctttact 218
Query: 556 ccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgc 615
|| || |||||||| || | | ||| ||||| |||||||||||||| ||||| || | |
Sbjct: 217 cctcctctcctagcgagacgtctgatggccggtttggtgatgccctgaatgttatccctc 158
Query: 616 aggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgc 675
|| ||||| | ||| | ||||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 157 agcaccttcctgtgcctcttggcgcctccctttcccaaacccttaccgcccttgccgcgc 98
Query: 676 cccgacattgt 686
|| ||||||||
Sbjct: 97 ccagacattgt 87
>gb|DT626552.1|DT626552 EST1158476 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAC06 5' end, mRNA sequence
Length = 745
Score = 188 bits (95), Expect = 2e-046
Identities = 257/311 (82%)
Strand = Plus / Minus
Query: 376 ccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcg 435
||||| |||||||||||||| | |||||| | ||||||||| ||||||||||||||||||
Sbjct: 397 ccgccaaagccgtagagggttctgccctgcctcttgagcgcatagacgacatccatggcg 338
Query: 436 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctcc 495
||||| |||||||| | |||||||| ||||| || |||||||| | ||||| ||||||
Sbjct: 337 gtgacagtcttgcgccttgcgtgctcagtgtaagtaacggcgtctctaatgacattctcc 278
Query: 496 agaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacg 555
| ||||||||| | || || | ||||| ||||||||||||||| ||| ||||| ||
Sbjct: 277 aaaaagatcttcaagactcccctcgtctcttcgtagatgagcccgctgatacgctttact 218
Query: 556 ccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgc 615
|| || |||||||| || | | ||| ||||| |||||||||||||| ||||| || | |
Sbjct: 217 cctcctctcctagcgagacgtctgatggccggtttggtgatgccctgaatgttatccctc 158
Query: 616 aggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgc 675
|| ||||| | ||| | ||||||||| ||||| |||| |||||| |||||||||||||||
Sbjct: 157 agcaccttcctgtgcctcttggcgcctccctttcccaaacccttaccgcccttgccgcgc 98
Query: 676 cccgacattgt 686
|| ||||||||
Sbjct: 97 ccagacattgt 87
>gb|DR695094.1|DR695094 EST1085187 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK40 3' end, mRNA sequence
Length = 573
Score = 157 bits (79), Expect = 8e-037
Identities = 253/311 (81%)
Strand = Plus / Minus
Query: 376 ccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcg 435
||||||||||| |||||||| | |||||| | ||||||||| |||||||||||||||||
Sbjct: 396 ccgccgaagccatagagggttctgccctgcctcttgagcgcatagacgacatccatggca 337
Query: 436 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctcc 495
||||| |||||||| | ||||||||| ||||| ||||||||||| | ||| || ||||||
Sbjct: 336 gtgacagtcttgcgcctggcgtgctcagtgtaagtgacggcgtctctgataacattctcc 277
Query: 496 agaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacg 555
|||||||| || | || || | |||||| ||||||||||| ||| |||||||| |||
Sbjct: 276 agaaagattttcaatactcccctggtctcttcgtagatgagtccgctaatgcgcttaacg 217
Query: 556 ccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgc 615
|| || ||||| || || | | ||| || |||||||| || ||||||||||| || | |
Sbjct: 216 cctcctctcctggcaagacgtctgatggcaggcttggtaataccctggatgttatccctc 157
Query: 616 aggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgc 675
|| ||||| | ||| | ||| || || ||||| |||| |||||| || |||||||||||
Sbjct: 156 agtaccttcctgtgcctcttcgctcctccctttcccaaacccttaccacccttgccgcgg 97
Query: 676 cccgacattgt 686
|| ||||||||
Sbjct: 96 ccagacattgt 86
>gb|CX651136.1|CX651136 COLD1_50_H10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_H10_A029 3', mRNA sequence
Length = 693
Score = 137 bits (69), Expect = 7e-031
Identities = 237/293 (80%)
Strand = Plus / Minus
Query: 379 ccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcggtg 438
||||| ||||||||||| || |||||||||||||| || |||||||| || | || ||
Sbjct: 516 ccgaaaccgtagagggtacgtccctgtcgcttgagagcatagacgacgtcgagggaagta 457
Query: 439 acggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctccaga 498
||||||||||| ||| ||||| ||||||||||| |||||||| ||||| ||| ||
Sbjct: 456 acggtcttgcgcttggcatgctcagtgtaggtgacagcgtcacgaatgacaccctcgagg 397
Query: 499 aagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacgccg 558
||| ||||||| ||||| ||||||||||||||||| | | || || |||||||| |||
Sbjct: 396 aaggtcttgagaacaccacgggtctcctcgtagatcatagcagaaatacgcttgacaccg 337
Query: 559 cccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgcagg 618
|| | | ||| || | ||||| || ||||||||||| || || |||||||| ||||
Sbjct: 336 ccacgacgagcgagacgtcggatagcaggcttggtgattccttgaatgttgtctcgcaaa 277
Query: 619 accttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgcc 671
| ||| ||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct: 276 atctttcggtgacgcttggcaccacccttgccgagacccttgccgcccttgcc 224
>gb|BQ702461.1|BQ702461 NXSI_128_H07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_H07 5' similar to Arabidopsis thaliana
sequence At5g59970 histone H4 - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 503
Score = 133 bits (67), Expect = 1e-029
Identities = 226/279 (81%)
Strand = Plus / Minus
Query: 408 cttgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgta 467
||||||||| ||||||||||||||||| ||||| |||||||| | ||||||||| |||||
Sbjct: 346 cttgagcgcatagacgacatccatggcagtgacagtcttgcgcctggcgtgctcagtgta 287
Query: 468 ggtgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctc 527
||||||||||| | ||| || |||||||||||||| || | || || | |||||| ||
Sbjct: 286 agtgacggcgtctctgataacattctccagaaagattttcaatactcccctggtctcttc 227
Query: 528 gtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccgg 587
||||||||| ||| |||||||| ||||| || ||||| || || | | ||| || ||
Sbjct: 226 gtagatgagtccgctaatgcgcttaacgcctcctctcctggcaagacgtctgatggcagg 167
Query: 588 cttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgccctt 647
|||||| || ||||||||||| || | ||| ||||| | ||| | ||| || || |||||
Sbjct: 166 cttggtaataccctggatgttatccctcagtaccttcctgtgcctcttcgctcctccctt 107
Query: 648 gcccagacccttgccgcccttgccgcgccccgacattgt 686
|||| |||||| || ||||||||||| || ||||||||
Sbjct: 106 tcccaaacccttaccacccttgccgcggccagacattgt 68
>gb|DT639072.1|DT639072 EST1154003 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHM70 3' end, mRNA sequence
Length = 374
Score = 133 bits (67), Expect = 1e-029
Identities = 226/279 (81%)
Strand = Plus / Minus
Query: 408 cttgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgta 467
||||||||| ||||||||||||||||| ||||| |||||||| | ||||||||| |||||
Sbjct: 372 cttgagcgcatagacgacatccatggcagtgacagtcttgcgcctggcgtgctcagtgta 313
Query: 468 ggtgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctc 527
||||||||||| | ||| || |||||||||||||| || | || || | |||||| ||
Sbjct: 312 agtgacggcgtctctgataacattctccagaaagattttcaatactcccctggtctcttc 253
Query: 528 gtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccgg 587
||||||||| ||| |||||||| ||||| || ||||| || || | | ||| || ||
Sbjct: 252 gtagatgagtccgctaatgcgcttaacgcctcctctcctggcaagacgtctgatggcagg 193
Query: 588 cttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgccctt 647
|||||| || ||||||||||| || | ||| ||||| | ||| | ||| || || |||||
Sbjct: 192 cttggtaataccctggatgttatccctcagtaccttcctgtgcctcttcgctcctccctt 133
Query: 648 gcccagacccttgccgcccttgccgcgccccgacattgt 686
|||| |||||| || ||||||||||| || ||||||||
Sbjct: 132 tcccaaacccttaccacccttgccgcggccagacattgt 94
>gb|AW697623.1|AW697623 ST64F01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST64F01, mRNA sequence
Length = 393
Score = 117 bits (59), Expect = 7e-025
Identities = 223/279 (79%)
Strand = Plus / Minus
Query: 408 cttgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgta 467
||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||| |||||
Sbjct: 363 cttgagcgcatagacnacatccatggcagtgacagtcttgcgnnnggcgtgctcagtgta 304
Query: 468 ggtgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctc 527
||||||||||| | ||| || |||||||||||||| || | || || | |||||| ||
Sbjct: 303 agtgacggcgtctctgataacattctccagaaagattttcaatactcccctggtctcttc 244
Query: 528 gtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccgg 587
||||||||| ||| |||||||| ||||| || ||||| || || | | ||| || ||
Sbjct: 243 gtagatgagtccgctaatgcgcttaacgcctcctctcctggcaagacgtctgatggcagg 184
Query: 588 cttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgccctt 647
|||||| || ||||||||||| || | ||| ||||| ||| | ||| || || |||||
Sbjct: 183 cttggtaataccctggatgttatccctcagtaccttcgtgtgcctcttcgctcctccctt 124
Query: 648 gcccagacccttgccgcccttgccgcgccccgacattgt 686
|||| |||||| || ||||||||||| || ||||||||
Sbjct: 123 tcccaaacccttaccacccttgccgcggccagacattgt 85
>gb|BE656925.1|BE656925 NXCI_058_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_058_C02 5' similar to Arabidopsis
thaliana sequence At5g59970 histone H4 - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 366
Score = 117 bits (59), Expect = 7e-025
Identities = 220/277 (79%)
Strand = Plus / Minus
Query: 410 tgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtagg 469
||||||| |||||||||||||| |||||| || || |||||||| ||||| |
Sbjct: 364 tgagcgcatagacgacatccatnnnggtgacannctngcnnnntgcgtgctcagtgtaag 305
Query: 470 tgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctcgt 529
| |||||||| | ||||| ||||||| ||||||||| | || || | ||||| ||||
Sbjct: 304 taacggcgtctctaatgacattctccaaaaagatcttcaagactcccctcgtctcttcgt 245
Query: 530 agatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccggct 589
||||||||||| ||| ||||| || || || |||||||| || | | ||| ||||| |
Sbjct: 244 agatgagcccgctgatacgctttactcctcctctcctagcgagacgtctgatggccggtt 185
Query: 590 tggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgcccttgc 649
||||||||||||| ||||| || | ||| ||||| | ||| | ||||||||| ||||| |
Sbjct: 184 tggtgatgccctgaatgttatccctcagcaccttcctgtgcctcttggcgcctccctttc 125
Query: 650 ccagacccttgccgcccttgccgcgccccgacattgt 686
||| |||||| ||||||||||||||||| ||||||||
Sbjct: 124 ccaaacccttaccgcccttgccgcgcccagacattgt 88
>gb|BX679718.1|BX679718 BX679718 RS Pinus pinaster cDNA clone RS32B07, mRNA sequence
Length = 216
Score = 115 bits (58), Expect = 3e-024
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 577 cggatcgccggcttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttg 636
||||| || ||||||||||| ||||||||||| || |||| || ||| ||||| ||||||
Sbjct: 201 cggatggcgggcttggtgataccctggatgttatctcgcaagatctttcggtgacgcttg 142
Query: 637 gcgccgcccttgcccagacccttgccgcccttgccgcg 674
|||||||||||||| |||||||||||||||||||||||
Sbjct: 141 gcgccgcccttgccgagacccttgccgcccttgccgcg 104
>gb|BG319305.1|BG319305 NXPV_026_D08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_026_D08 5' similar to Arabidopsis
thaliana sequence At5g59970 histone H4 - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 366
Score = 113 bits (57), Expect = 1e-023
Identities = 221/279 (79%)
Strand = Plus / Minus
Query: 408 cttgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgta 467
||||||||| |||||||||||||||||||||| | |||| |||||||| |||||
Sbjct: 366 cttgagcgcatagacgacatccatggcggtgannnncntgcgcattgcgtgctcagtgta 307
Query: 468 ggtgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctc 527
|| ||| |||| | ||||| ||||||| |||||| | | || || ||||| ||
Sbjct: 306 agtaacgncgtctcnnatgacattctccaaaaagatnntcaagactcccatcgtctcttc 247
Query: 528 gtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccgg 587
||||||||||||| ||| ||||| || || || |||||||| || | | ||| |||||
Sbjct: 246 gtagatgagcccgctgatacgctttactcctcctctcctagcgagacgtctgatggccgg 187
Query: 588 cttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgccctt 647
|||||||||||||| ||||| || | ||| ||||| | ||| | ||||||||| |||||
Sbjct: 186 tttggtgatgccctgaatgttatccctcagcaccttcctgtgcctcttggcgcctccctt 127
Query: 648 gcccagacccttgccgcccttgccgcgccccgacattgt 686
|||| |||||| ||||||||||||||||| ||||||||
Sbjct: 126 tcccaaacccttaccgcccttgccgcgcccagacattgt 88
>gb|CF388178.1|CF388178 RTDR2_1_G07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_G07_A021 5', mRNA
sequence
Length = 559
Score = 109 bits (55), Expect = 2e-022
Identities = 220/275 (80%)
Strand = Plus / Minus
Query: 409 ttgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtag 468
||||||||||| ||||| |||||||||||||| ||||| || || || ||||| |||||
Sbjct: 321 ttgagcgcgtatacgacgtccatggcggtgaccgtctttcgtcgtgcatgctctgtgtat 262
Query: 469 gtgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctcg 528
|| |||||||| || ||||||| ||| || || | |||||| || ||||| || |||||
Sbjct: 261 gtaacggcgtctcgtatgacgtgctctaggaataccttgagaacgccgcgcgtttcctca 202
Query: 529 tagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccggc 588
||||| | || || ||||||||||| ||||| | | ||| || | || || ||||||
Sbjct: 201 tagattaatcccgaaatgcgcttgacaccgcctcgacgagcgagacgacgaatggccggc 142
Query: 589 ttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgcccttg 648
|||||||| || |||||||| || |||| ||||| || || ||||||||||||||||||
Sbjct: 141 ttggtgataccttggatgttatcacgcaataccttacgatgacgcttggcgccgcccttg 82
Query: 649 cccagacccttgccgcccttgccgcgccccgacat 683
|| | ||| || ||||| || ||||| || |||||
Sbjct: 81 cctaaacctttaccgcctttaccgcgaccggacat 47
>gb|DR682322.1|DR682322 EST1072397 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA913 3' end, mRNA sequence
Length = 774
Score = 99.6 bits (50), Expect = 2e-019
Identities = 245/310 (79%)
Strand = Plus / Minus
Query: 374 agccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatgg 433
|||| ||||||||||| ||||| |||||||| | ||| || | |||||| |||||||| |
Sbjct: 371 agcctccgaagccgtaaagggttcggccctgcctctttagggagtagacaacatccattg 312
Query: 434 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttct 493
| || |||||||| | | ||||||||| ||||| || ||||| || | ||| || ||||
Sbjct: 311 ccgtcacggtctttctcctggcgtgctctgtgtatgtcacggcatctctgatcacattct 252
Query: 494 ccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttga 553
||| |||||||| | ||||| | |||||| || ||||||||||| ||| |||||||
Sbjct: 251 ccaagaagatcttcaaaacacctctggtctcttcatagatgagcccactgatacgcttga 192
Query: 554 cgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 613
| || || ||||| || || | || ||| || |||||||| |||||||| ||||| || |
Sbjct: 191 cacctcctctcctggcaagacgcctgatggcaggcttggtaatgccctgaatgttatctc 132
Query: 614 gcaggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgc 673
|||| ||||| | ||| | |||||| || || || |||| ||||||||| ||||| || |
Sbjct: 131 gcagcaccttcctgtgcctcttggcaccacctttccccaaacccttgcctccctttccac 72
Query: 674 gccccgacat 683
|||| |||||
Sbjct: 71 gcccagacat 62
>gb|DT630968.1|DT630968 EST1145899 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF323 3' end, mRNA sequence
Length = 730
Score = 99.6 bits (50), Expect = 2e-019
Identities = 245/310 (79%)
Strand = Plus / Minus
Query: 374 agccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatgg 433
|||| ||||||||||| ||||| |||||||| | ||| || | |||||| |||||||| |
Sbjct: 379 agcctccgaagccgtaaagggttcggccctgcctctttagggagtagacaacatccattg 320
Query: 434 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttct 493
| || |||||||| | | ||||||||| ||||| || ||||| || | ||| || ||||
Sbjct: 319 ccgtcacggtctttctcctggcgtgctctgtgtatgtcacggcatctctgatcacattct 260
Query: 494 ccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttga 553
||| |||||||| | ||||| | |||||| || ||||||||||| ||| |||||||
Sbjct: 259 ccaagaagatcttcaaaacacctctggtctcttcatagatgagcccactgatacgcttga 200
Query: 554 cgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 613
| || || ||||| || || | || ||| || |||||||| |||||||| ||||| || |
Sbjct: 199 cacctcctctcctggcaagacgcctgatggcaggcttggtaatgccctgaatgttatctc 140
Query: 614 gcaggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgc 673
|||| ||||| | ||| | |||||| || || || |||| ||||||||| ||||| || |
Sbjct: 139 gcagcaccttcctgtgcctcttggcaccacctttccccaaacccttgcctccctttccac 80
Query: 674 gccccgacat 683
|||| |||||
Sbjct: 79 gcccagacat 70
>gb|BF169847.1|BF169847 NXCI_127_B02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_127_B02 5' similar to Arabidopsis
thaliana sequence At5g59970 histone H4 - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 320
Score = 95.6 bits (48), Expect = 3e-018
Identities = 184/233 (78%)
Strand = Plus / Minus
Query: 454 gcgtgctcggtgtaggtgacggcgtcacggatgacgttctccagaaagatcttgagcaca 513
|||||||| ||||| || |||||||| ||||| ||||||| ||||||||| | ||
Sbjct: 320 gcgtgctcagtgtaagtaacggcgtcnnnaatgacattctccaaaaagatcttcaagact 261
Query: 514 ccgcgggtctcctcgtagatgagcccggagatgcgcttgacgccgcccctcctagccagc 573
|| ||||| ||||||||||||||| ||| ||||| || || |||||||| ||
Sbjct: 260 ccnnncgtctcttcgtagatgagcccgctgatacgctttactcctnnnctcctagcgaga 201
Query: 574 ctccggatcgccggcttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgc 633
| | ||| ||||| |||||||||||||| ||||| || | ||| ||||| | ||| |
Sbjct: 200 cgtctgatggccggtttggtgatgccctgaatgttatccctcagcaccttcctgtgcnnc 141
Query: 634 ttggcgccgcccttgcccagacccttgccgcccttgccgcgccccgacattgt 686
|||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||
Sbjct: 140 ttggcgcctccctttcccaaacccttaccgcccttgccgcgcccagacattgt 88
>gb|DR015433.1|DR015433 STRS1_3_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_B05_A034 5', mRNA sequence
Length = 904
Score = 93.7 bits (47), Expect = 1e-017
Identities = 218/275 (79%)
Strand = Plus / Plus
Query: 388 tagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcggtgacggtcttg 447
|||||||| | |||||||| ||| | || || |||||||||||||||||||| |||||
Sbjct: 275 tagagggttctgccctgtctcttcaaagcataaacgacatccatggcggtgacagtcttt 334
Query: 448 cggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctccagaaagatcttg 507
| | ||||||||| ||||| || ||||| || | |||||| ||||| ||||| |||||
Sbjct: 335 ctcctggcgtgctctgtgtatgtaacggcatccctgatgacattctcgagaaatatcttc 394
Query: 508 agcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacgccgcccctccta 567
| ||||| | || || ||||||||||| ||| ||| ||||||||||| || || ||
Sbjct: 395 aagacacctctcgtttcttcgtagatgagaccgctgatacgcttgacgcctcctcttctg 454
Query: 568 gccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgcaggaccttgcgg 627
|| || | || ||| |||||||| ||||||||||| ||||| || ||||| ||||| | |
Sbjct: 455 gcaagacgcctgatggccggcttcgtgatgccctgaatgttatcacgcagaaccttcctg 514
Query: 628 tggcgcttggcgccgcccttgcccagacccttgcc 662
|| | ||| || || ||||| |||| |||||||||
Sbjct: 515 tgcctcttcgcacctccctttcccaaacccttgcc 549
>gb|BG625837.1|BG625837 NXPV_066_F07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_F07 5' similar to Arabidopsis
thaliana sequence At5g59970 histone H4 - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 290
Score = 91.7 bits (46), Expect = 4e-017
Identities = 136/167 (81%)
Strand = Plus / Minus
Query: 520 gtctcctcgtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccgg 579
||||| ||||||||||||||| ||| ||||| || || |||||||| || | | |
Sbjct: 254 gtctcttcgtagatgagcccgctgatacgctttactcctnnnctcctagcgagacgtctg 195
Query: 580 atcgccggcttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcg 639
|| ||||| |||||||||||||| ||||| || | ||| ||||| | ||| | |||||||
Sbjct: 194 atggccggtttggtgatgccctgaatgttatccctcagcaccttcctgtgcctcttggcg 135
Query: 640 ccgcccttgcccagacccttgccgcccttgccgcgccccgacattgt 686
|| ||||| |||| |||||| ||||||||||||||||| ||||||||
Sbjct: 134 cctccctttcccaaacccttaccgcccttgccgcgcccagacattgt 88
>gb|CX715301.1|CX715301 RTPQ1_33_F02.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_F02_A032 3', mRNA sequence
Length = 639
Score = 83.8 bits (42), Expect = 1e-014
Identities = 243/310 (78%)
Strand = Plus / Plus
Query: 374 agccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatgg 433
|||| ||||| ||||| ||||| |||||||| | ||| |||| |||||| ||||||||||
Sbjct: 282 agcctccgaaaccgtaaagggttcggccctgcctcttcagcgagtagacaacatccatgg 341
Query: 434 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttct 493
| || || ||||| | | ||||||||| || ||||| || || || | |||||| ||||
Sbjct: 342 ctgtcacagtcttcctcctggcgtgctctgtataggtcacagcatccctgatgacattct 401
Query: 494 ccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttga 553
||| || ||||| || || || | |||||||| |||||||| ||| |||||||||||
Sbjct: 402 ccaagaaaatcttcagaacgcctctagtctcctcatagatgagaccgctgatgcgcttga 461
Query: 554 cgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 613
|||| || ||||| || || | || ||| || ||||| ||||||||||| || || || |
Sbjct: 462 cgcctcctctcctggcgaggcgcctgattgcaggctttgtgatgccctgaatattatctc 521
Query: 614 gcaggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgc 673
|| ||||| | ||| | ||| || || ||||| |||| |||||| || ||||| || |
Sbjct: 522 tgagaaccttcctgtgcctcttagcacctcccttccccaaacccttacctcccttaccac 581
Query: 674 gccccgacat 683
||||||||||
Sbjct: 582 gccccgacat 591
>gb|BF169426.1|BF169426 NXCI_121_A11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_121_A11 5', mRNA sequence
Length = 207
Score = 77.8 bits (39), Expect = 6e-013
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 583 gccggcttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccg 642
||||| |||||||||||||| ||||| || | ||| | ||| | ||| | ||||||||
Sbjct: 191 gccggtttggtgatgccctgaatgttatccctcagcancttcctgtgcctcttggcgcnn 132
Query: 643 cccttgcccagacccttgccgcccttgccgcgccccgacattgt 686
||||| |||| |||||| ||||||||||||||||| ||||||||
Sbjct: 131 ccctttcccaaacccttaccgcccttgccgcgcccagacattgt 88
>gb|DN457774.1|DN457774 EST953573 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH387 5' end, mRNA sequence
Length = 777
Score = 77.8 bits (39), Expect = 6e-013
Identities = 159/199 (79%)
Strand = Plus / Plus
Query: 408 cttgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgta 467
||||||||| |||||||||| |||||| ||||| ||||| | | ||||||||| |||||
Sbjct: 518 cttgagcgcatagacgacattcatggcagtgacattcttgtgcctggcgtgctcagtgta 577
Query: 468 ggtgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctc 527
||||||| || | |||||| ||||| |||||||| || | || || | |||||| ||
Sbjct: 578 aatgacggcatctctgatgacattctctagaaagattttcaatactcccctggtctcttc 637
Query: 528 gtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccgg 587
||||||||| ||| |||||||| ||||| || ||||| || || | | ||| || ||
Sbjct: 638 gtagatgagtccgctaatgcgcttaacgcctcctctcctggcaagacgtctgatggcagg 697
Query: 588 cttggtgatgccctggatg 606
|||||| ||||||||||||
Sbjct: 698 cttggtaatgccctggatg 716
>gb|DT625321.1|DT625321 EST1159596 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAO28 5' end, mRNA sequence
Length = 777
Score = 77.8 bits (39), Expect = 6e-013
Identities = 159/199 (79%)
Strand = Plus / Plus
Query: 408 cttgagcgcgtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgta 467
||||||||| |||||||||| |||||| ||||| ||||| | | ||||||||| |||||
Sbjct: 518 cttgagcgcatagacgacattcatggcagtgacattcttgtgcctggcgtgctcagtgta 577
Query: 468 ggtgacggcgtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctc 527
||||||| || | |||||| ||||| |||||||| || | || || | |||||| ||
Sbjct: 578 aatgacggcatctctgatgacattctctagaaagattttcaatactcccctggtctcttc 637
Query: 528 gtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccgg 587
||||||||| ||| |||||||| ||||| || ||||| || || | | ||| || ||
Sbjct: 638 gtagatgagtccgctaatgcgcttaacgcctcctctcctggcaagacgtctgatggcagg 697
Query: 588 cttggtgatgccctggatg 606
|||||| ||||||||||||
Sbjct: 698 cttggtaatgccctggatg 716
>gb|DR694482.1|DR694482 EST1084574 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAED11 3' end, mRNA sequence
Length = 726
Score = 75.8 bits (38), Expect = 2e-012
Identities = 236/302 (78%)
Strand = Plus / Minus
Query: 382 aagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatggcggtgacg 441
|||||||||||||| |||||||| | |||||| | |||||| |||||||| || |||||
Sbjct: 306 aagccgtagagggttcggccctgcctcttgagtgagtagacaacatccatagcagtgaca 247
Query: 442 gtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttctccagaaag 501
||||| | | |||||| || ||||| || || || || | || || ||||||| |||
Sbjct: 246 gtctttctcctggcgtgttctgtgtatgttactgcatctctaataacattctccaagaag 187
Query: 502 atcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttgacgccgccc 561
||||| | || || | ||||||||| |||||||||||| ||||||||||||||| ||
Sbjct: 186 atcttcaagacgcctctggtctcctcatagatgagcccgatgatgcgcttgacgcctcct 127
Query: 562 ctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtcgcgcaggacc 621
||||| || || | | ||| || || |||||||| ||||| ||||| || | ||| ||
Sbjct: 126 ctcctggcaaggcgtctgatggctggtttggtgataccctgaatgttatctctcagcact 67
Query: 622 ttgcggtggcgcttggcgccgcccttgcccagacccttgccgcccttgccgcgccccgac 681
|| | ||| | |||||| || ||||| |||| |||||| || ||||| ||||| || |||
Sbjct: 66 tttctgtgcctcttggcacctccctttcccaaacccttccctccctttccgcggccagac 7
Query: 682 at 683
||
Sbjct: 6 at 5
>gb|BM367468.1|BM367468 NXLV_049_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_049_F09 5' similar to Arabidopsis thaliana
sequence At5g59970 histone H4 - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 634
Score = 69.9 bits (35), Expect = 1e-010
Identities = 185/235 (78%)
Strand = Plus / Minus
Query: 374 agccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatgg 433
|||| ||||| ||||||||||| |||||||| | |||||||| ||| || |||||||| |
Sbjct: 397 agcctccgaaaccgtagagggttcggccctgcctcttgagcgagtaaacaacatccattg 338
Query: 434 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttct 493
| ||||| ||||| | | |||||| || ||||| || || || || | || || ||||
Sbjct: 337 cagtgacagtctttctcctggcgtgttctgtgtatgttactgcatctctaataacattct 278
Query: 494 ccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttga 553
||| |||||||| | || || | |||||| || |||||||||||| ||||||||| |
Sbjct: 277 ccaagaagatcttcaagacgcctctggtctcttcatagatgagcccgctgatgcgcttaa 218
Query: 554 cgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgtt 608
|||| || |||||||| || | || ||| || || |||||||| ||||| |||||
Sbjct: 217 cgcctcctctcctagcaagacgcctgatagctggtttggtgattccctgaatgtt 163
>gb|BF169747.1|BF169747 NXCI_128_F03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_128_F03 5', mRNA sequence
Length = 207
Score = 67.9 bits (34), Expect = 6e-010
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 633 cttggcgccgcccttgcccagacccttgccgcccttgccgcgccccgacattgt 686
||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||
Sbjct: 141 cttggcgcctccctttcccaaacccttaccgcccttgccgcgcccagacattgt 88
>gb|AW754808.1|AW754808 PC05G03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC05G03, mRNA sequence
Length = 216
Score = 61.9 bits (31), Expect = 4e-008
Identities = 82/98 (83%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 589 ttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgcccttg 648
|||||||||||||| ||||| || | ||| ||||| | ||| | ||||||||| |||||
Sbjct: 200 ttggtgatgccctgaatgttatccctcagcaccttcctgtgcctcttggcgcctcccttt 141
Query: 649 cccagacccttgccgcccttgccgcgccccgacattgt 686
|||| ||| | ||||||||||||||||| ||||||||
Sbjct: 140 cccaaaccnta-ccgcccttgccgcgcccagacattgt 104
>gb|DR687391.1|DR687391 EST1077473 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABR89 3' end, mRNA sequence
Length = 499
Score = 61.9 bits (31), Expect = 4e-008
Identities = 184/235 (78%)
Strand = Plus / Minus
Query: 374 agccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatgg 433
|||| ||||| ||||||||||| |||||||| | |||||| | ||| || |||||||| |
Sbjct: 381 agcctccgaaaccgtagagggttcggccctgcctcttgagggagtaaacaacatccattg 322
Query: 434 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttct 493
| ||||| ||||| | | |||||| || ||||| || || || || | || || ||||
Sbjct: 321 cagtgacagtctttctcctggcgtgttctgtgtatgttactgcatctctaataacattct 262
Query: 494 ccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttga 553
||| |||||||| | || || | |||||| || |||||||||||| ||||||||| |
Sbjct: 261 ccaagaagatcttcaagacgcctctggtctcttcatagatgagcccgctgatgcgcttaa 202
Query: 554 cgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgtt 608
|||| || |||||||| || | || ||| || || |||||||| ||||| |||||
Sbjct: 201 cgcctcctctcctagcaagacgcctgatagctggtttggtgattccctgaatgtt 147
>gb|DT634048.1|DT634048 EST1148979 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG167 3' end, mRNA sequence
Length = 506
Score = 61.9 bits (31), Expect = 4e-008
Identities = 184/235 (78%)
Strand = Plus / Minus
Query: 374 agccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatgg 433
|||| ||||| ||||||||||| |||||||| | |||||| | ||| || |||||||| |
Sbjct: 389 agcctccgaaaccgtagagggttcggccctgcctcttgagggagtaaacaacatccattg 330
Query: 434 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttct 493
| ||||| ||||| | | |||||| || ||||| || || || || | || || ||||
Sbjct: 329 cagtgacagtctttctcctggcgtgttctgtgtatgttactgcatctctaataacattct 270
Query: 494 ccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttga 553
||| |||||||| | || || | |||||| || |||||||||||| ||||||||| |
Sbjct: 269 ccaagaagatcttcaagacgcctctggtctcttcatagatgagcccgctgatgcgcttaa 210
Query: 554 cgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgtt 608
|||| || |||||||| || | || ||| || || |||||||| ||||| |||||
Sbjct: 209 cgcctcctctcctagcaagacgcctgatagctggtttggtgattccctgaatgtt 155
>gb|CD016241.1|CD016241 NXCI_026_G04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_026_G04 5', mRNA sequence
Length = 195
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 637 gcgccgcccttgcccagacccttgccgcccttgccgcgccccgacattg 685
||||| ||||| |||| |||||| ||||||||||||||||| |||||||
Sbjct: 125 gcgcctccctttcccaaacccttaccgcccttgccgcgcccagacattg 77
>gb|DN611308.1|DN611308 EST964358 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB044, mRNA sequence
Length = 510
Score = 58.0 bits (29), Expect = 5e-007
Identities = 149/189 (78%)
Strand = Plus / Minus
Query: 417 gtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggc 476
|||||| ||||||||||| || || ||||| | | |||||||| ||||| || |||||
Sbjct: 334 gtagacaacatccatggctgtcacagtctttcttctcgcgtgctctgtgtatgtcacggc 275
Query: 477 gtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgag 536
|| | ||| |||||||||| |||||||| | || || | |||||| || ||||||||
Sbjct: 274 atccccgatcacgttctccaagaagatcttcaagacgcctctggtctcttcatagatgag 215
Query: 537 cccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccggcttggtgat 596
||| ||||||||| ||||| || ||||| || || | || ||| || |||||||||||
Sbjct: 214 accgctgatgcgctttacgcctcctctcctggcaagacgcctgatagcaggcttggtgat 155
Query: 597 gccctggat 605
||||||||
Sbjct: 154 accctggat 146
>gb|DT638657.1|DT638657 EST1153588 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH80 3' end, mRNA sequence
Length = 354
Score = 58.0 bits (29), Expect = 5e-007
Identities = 131/165 (79%)
Strand = Plus / Minus
Query: 519 ggtctcctcgtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccg 578
||||||||| |||||||||||| ||||||||||||||| || ||||| || || | |
Sbjct: 241 ggtctcctcatagatgagcccgatgatgcgcttgacgcctcctctcctggcaaggcgtct 182
Query: 579 gatcgccggcttggtgatgccctggatgttgtcgcgcaggaccttgcggtggcgcttggc 638
||| || || |||||||| ||||| ||||| || | ||| || || | ||| | ||||||
Sbjct: 181 gatggctggtttggtgataccctgaatgttatctctcagcacttttctgtgcctcttggc 122
Query: 639 gccgcccttgcccagacccttgccgcccttgccgcgccccgacat 683
|| ||||| |||| |||||| || ||||| ||||| || |||||
Sbjct: 121 acctccctttcccaaacccttccctccctttccgcggccagacat 77
>gb|DT628140.1|DT628140 EST1156889 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCU71 5' end, mRNA sequence
Length = 510
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 454 gcgtgctcggtgtaggtgacggcgtcacggatgacgttctccagaaagatcttgagcaca 513
|||||||| ||||| || ||||| || | ||| |||||||||| |||||||| | ||
Sbjct: 214 gcgtgctctgtgtatgtcacggcatccccgatcacgttctccaagaagatcttcaagacg 273
Query: 514 ccgcgggtctcctcgtagatgagcccggagatgcgcttgacgccgcccctcctagccagc 573
|| | |||||| || |||||||| ||| ||||||||| ||||| || ||||| || ||
Sbjct: 274 cctctggtctcttcatagatgagaccgctgatgcgctttacgcctcctctcctggcaaga 333
Query: 574 ctccggatcgccggcttggtgatgccctggat 605
| || ||| || ||||||||||| ||||||||
Sbjct: 334 cgcctgatagcaggcttggtgataccctggat 365
>gb|CF470949.1|CF470949 RTDS1_15_A11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_A11_A015 5', mRNA sequence
Length = 680
Score = 54.0 bits (27), Expect = 9e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 335 tagacaacatccatggccgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 276
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctc 524
|||||||| || || || | ||||||||| || ||||| | ||||||
Sbjct: 275 tcacggatcacattttctaaaaagatcttcaggacacccctggtctc 229
>gb|CV146683.1|CV146683 EST857892 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDZ16 5' end, mRNA sequence
Length = 651
Score = 54.0 bits (27), Expect = 9e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 231 tagacaacatccatggccgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 172
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctc 524
|||||||| || || || | ||||||||| || ||||| | ||||||
Sbjct: 171 tcacggatcacattttctaaaaagatcttcaggacacccctggtctc 125
>gb|CX652743.1|CX652743 COLD1_61_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_E04_A029 3', mRNA sequence
Length = 778
Score = 54.0 bits (27), Expect = 9e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 347 tagacaacatccatggccgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 288
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctc 524
|||||||| || || || | ||||||||| || ||||| | ||||||
Sbjct: 287 tcacggatcacattttctaaaaagatcttcaggacacccctggtctc 241
>gb|CX652822.1|CX652822 COLD1_61_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_E04_A029 5', mRNA sequence
Length = 751
Score = 54.0 bits (27), Expect = 9e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 324 tagacaacatccatggccgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 265
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctc 524
|||||||| || || || | ||||||||| || ||||| | ||||||
Sbjct: 264 tcacggatcacattttctaaaaagatcttcaggacacccctggtctc 218
>gb|CX652935.1|CX652935 COLD1_62_H12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_H12_A029 3', mRNA sequence
Length = 768
Score = 54.0 bits (27), Expect = 9e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 349 tagacaacatccatggccgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 290
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctc 524
|||||||| || || || | ||||||||| || ||||| | ||||||
Sbjct: 289 tcacggatcacattttctaaaaagatcttcaggacacccctggtctc 243
>gb|CX653021.1|CX653021 COLD1_62_H12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_H12_A029 5', mRNA sequence
Length = 770
Score = 54.0 bits (27), Expect = 9e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 329 tagacaacatccatggccgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 270
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctc 524
|||||||| || || || | ||||||||| || ||||| | ||||||
Sbjct: 269 tcacggatcacattttctaaaaagatcttcaggacacccctggtctc 223
>gb|DT624924.1|DT624924 EST1159199 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAK02 5' end, mRNA sequence
Length = 651
Score = 54.0 bits (27), Expect = 9e-006
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 231 tagacaacatccatggccgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 172
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctc 524
|||||||| || || || | ||||||||| || ||||| | ||||||
Sbjct: 171 tcacggatcacattttctaaaaagatcttcaggacacccctggtctc 125
>gb|AW064813.1|AW064813 ST36B01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST36B01, mRNA sequence
Length = 400
Score = 52.0 bits (26), Expect = 3e-005
Identities = 74/90 (82%)
Strand = Plus / Minus
Query: 519 ggtctcctcgtagatgagcccggagatgcgcttgacgccgcccctcctagccagcctccg 578
|||||| || |||||||||||| ||||||||| ||||| || |||||||| || | ||
Sbjct: 222 ggtctcttcatagatgagcccgctgatgcgcttaacgcctcctctcctagcaagacgcct 163
Query: 579 gatcgccggcttggtgatgccctggatgtt 608
||| || || |||||||| ||||| |||||
Sbjct: 162 gatagctggtttggtgattccctgaatgtt 133
>gb|BX254626.1|BX254626 BX254626 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP101E08 similar to HISTONE H4, mRNA sequence
Length = 669
Score = 52.0 bits (26), Expect = 3e-005
Identities = 197/254 (77%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| || |||||||| || || ||||| || | |||||| || |||||||| |||||
Sbjct: 346 tagacaacgtccatggctgtaacagtcttacgcctggcgtgttctgtgtaggtcacggca 287
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgagc 537
|||||||| || || || | ||||||||| || ||||| | |||||| || || || ||
Sbjct: 286 tcacggatcacattttctaaaaagatcttcaggacacccctggtctcttcataaatcagt 227
Query: 538 ccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccggcttggtgatg 597
||| ||| ||||| || || || | || ||||| | || ||| || ||||| || ||
Sbjct: 226 ccgctgatacgcttcacaccaccacgtctcgccagacgcctgattgcaggcttcgtaata 167
Query: 598 ccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgcccttgcccagaccc 657
||||||||||| || || || || || | |||||| ||||| || || ||||||| ||||
Sbjct: 166 ccctggatgttatcacgaagaactttcctgtggcgtttggcaccacctttgcccaaaccc 107
Query: 658 ttgccgcccttgcc 671
||||| ||||||||
Sbjct: 106 ttgccacccttgcc 93
>gb|BX679616.1|BX679616 BX679616 RS Pinus pinaster cDNA clone RS29G03, mRNA sequence
Length = 224
Score = 52.0 bits (26), Expect = 3e-005
Identities = 143/182 (78%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| | | |||||||| ||||| || |||||
Sbjct: 212 tagacaacatccatggctgtcacagtctttcttctcgcgtgctctgtgtatgtcacggca 153
Query: 478 tcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgagc 537
|| | || |||||||||| ||||||||| | || || | |||||| || ||||||||
Sbjct: 152 tccctaatcacgttctccaaaaagatcttcaagacgcctctggtctcttcatagatgaga 93
Query: 538 ccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccggcttggtgatg 597
||| ||||||||| ||||| || ||||| || || | || ||| || ||||||||||||
Sbjct: 92 ccgctgatgcgctttacgcctcctctcctggcgagacgcctgatagcaggcttggtgatg 33
Query: 598 cc 599
||
Sbjct: 32 cc 31
>gb|BX249832.1|BX249832 BX249832 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP029C01 similar to HISTONE H4, mRNA sequence
Length = 694
Score = 50.1 bits (25), Expect = 1e-004
Identities = 190/245 (77%)
Strand = Plus / Minus
Query: 424 acatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacgg 483
||||||||||| ||||| ||||| | | ||||||||| ||||| || || || || | |
Sbjct: 328 acatccatggctgtgacagtctttctcctggcgtgctctgtgtatgtaacagcatccctg 269
Query: 484 atgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggag 543
||||| ||||| ||||| ||||| | ||||| | || || ||||| ||||| |||
Sbjct: 268 atgacattctcaagaaatatcttcaagacacctctcgtttcttcgtatatgagaccgcta 209
Query: 544 atgcgcttgacgccgcccctcctagccagcctccggatcgccggcttggtgatgccctgg 603
|| ||||||||||| || || || || || | || ||| |||||||| |||||||||||
Sbjct: 208 atacgcttgacgcctcctcttctggcaagacgcctgatagccggcttcgtgatgccctga 149
Query: 604 atgttgtcgcgcaggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccg 663
||||| || |||| ||||| | ||| | ||| || || ||||| |||| |||||||||
Sbjct: 148 atgttatcacgcaaaaccttcctgtgcctcttcgcacctccctttcccaaacccttgcct 89
Query: 664 ccctt 668
|||||
Sbjct: 88 ccctt 84
>gb|BX255101.1|BX255101 BX255101 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110H01 similar to HISTONE H4, mRNA sequence
Length = 494
Score = 50.1 bits (25), Expect = 1e-004
Identities = 190/245 (77%)
Strand = Plus / Minus
Query: 424 acatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacgg 483
||||||||||| ||||| ||||| | | ||||||||| ||||| || || || || | |
Sbjct: 331 acatccatggctgtgacagtctttctcctggcgtgctctgtgtatgtaacagcatccctg 272
Query: 484 atgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggag 543
||||| ||||| ||||| ||||| | ||||| | || || ||||| ||||| |||
Sbjct: 271 atgacattctcaagaaatatcttcaagacacctctcgtttcttcgtatatgagaccgcta 212
Query: 544 atgcgcttgacgccgcccctcctagccagcctccggatcgccggcttggtgatgccctgg 603
|| ||||||||||| || || || || || | || ||| |||||||| |||||||||||
Sbjct: 211 atacgcttgacgcctcctcttctggcaagacgcctgatagccggcttcgtgatgccctga 152
Query: 604 atgttgtcgcgcaggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccg 663
||||| || |||| ||||| | ||| | ||| || || ||||| |||| |||||||||
Sbjct: 151 atgttatcacgcaaaaccttcctgtgcctcttcgcacctccctttcccaaacccttgcct 92
Query: 664 ccctt 668
|||||
Sbjct: 91 ccctt 87
>gb|DR089686.1|DR089686 RTAL1_10_E09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_E09_A029 3', mRNA sequence
Length = 666
Score = 48.1 bits (24), Expect = 5e-004
Identities = 150/192 (78%)
Strand = Plus / Minus
Query: 417 gtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggc 476
||||||||| |||||||| || || ||||| | | ||||||||| ||||| || || ||
Sbjct: 313 gtagacgacgtccatggctgtcacagtctttctcctggcgtgctctgtgtatgtcaccgc 254
Query: 477 gtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgag 536
|| | ||| || ||||||| |||||||| | || || | |||||| || ||||||||
Sbjct: 253 atccctgatcacattctccaagaagatcttcaagacgcctctggtctcttcatagatgag 194
Query: 537 cccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccggcttggtgat 596
||| ||| ||||||||||| || || || || || | || ||| || |||||||||||
Sbjct: 193 cccactgatacgcttgacgcctcctcttcttgcgagacgcctgatggcaggcttggtgat 134
Query: 597 gccctggatgtt 608
|||||| |||||
Sbjct: 133 gccctgaatgtt 122
>gb|DR089771.1|DR089771 RTAL1_10_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_E09_A029 5', mRNA sequence
Length = 611
Score = 48.1 bits (24), Expect = 5e-004
Identities = 150/192 (78%)
Strand = Plus / Minus
Query: 417 gtagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggc 476
||||||||| |||||||| || || ||||| | | ||||||||| ||||| || || ||
Sbjct: 291 gtagacgacgtccatggctgtcacagtctttctcctggcgtgctctgtgtatgtcaccgc 232
Query: 477 gtcacggatgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgag 536
|| | ||| || ||||||| |||||||| | || || | |||||| || ||||||||
Sbjct: 231 atccctgatcacattctccaagaagatcttcaagacgcctctggtctcttcatagatgag 172
Query: 537 cccggagatgcgcttgacgccgcccctcctagccagcctccggatcgccggcttggtgat 596
||| ||| ||||||||||| || || || || || | || ||| || |||||||||||
Sbjct: 171 cccactgatacgcttgacgcctcctcttcttgcgagacgcctgatggcaggcttggtgat 112
Query: 597 gccctggatgtt 608
|||||| |||||
Sbjct: 111 gccctgaatgtt 100
>gb|AL750508.1|AL750508 AL750508 RN Pinus pinaster cDNA clone RN03C09 similar to HISTONE
H4, mRNA sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.008
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 454 gcgtgctcggtgtaggtgacggcgtcacggatgacgttctccagaaagatcttgagcaca 513
||||| || ||||| ||||| || || | |||||| ||||| ||||||||||| ||||||
Sbjct: 292 gcgtgttctgtgtaagtgacagcatccctgatgacattctcaagaaagatcttcagcaca 233
Query: 514 cc 515
||
Sbjct: 232 cc 231
>gb|BX254770.1|BX254770 BX254770 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP104C04 similar to HISTONE H4, mRNA sequence
Length = 377
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 598 ccctggatgttgtcgcgcaggaccttgcggtggcgcttggcgccgcccttgcccagaccc 657
||||||||||| || || || || || | |||||| ||||| || || ||||||| ||||
Sbjct: 83 ccctggatgttatcacgaagaactttcctgtggcgtttggcaccacctttgcccaaaccc 24
Query: 658 ttgccgcccttgcc 671
||||| ||||||||
Sbjct: 23 ttgccacccttgcc 10
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,898
Number of Sequences: 355925
Number of extensions: 76898
Number of successful extensions: 20422
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 20311
Number of HSP's gapped (non-prelim): 84
length of query: 761
length of database: 217,277,237
effective HSP length: 19
effective length of query: 742
effective length of database: 210,514,662
effective search space: 156201879204
effective search space used: 156201879204
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)