BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131543.2.5
         (545 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN627075.1|DN627075  EST977891 Subtracted pine embryo lib...    40   0.091
gb|DN633693.1|DN633693  EST984509 Subtracted pine embryo lib...    40   0.091
gb|DR093200.1|DR093200  STRR1_6_E09.g1_A033 Stem Response Re...    38   0.36 

>gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
           clone PTAAD96, mRNA sequence
          Length = 403

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                       
Query: 355 ggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgccgtgtggttcttc 414
           |||||||| || || ||||||||   |||| | ||||||||||| || ||||| ||||| 
Sbjct: 150 ggcttcttaattccattcttgtgattcttgtaagattggttatgagctgtgtgattcttt 91

                       
Query: 415 gacttggccatc 426
           ||||| ||||||
Sbjct: 90  gactttgccatc 79



>gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
           clone PTADA52, mRNA sequence
          Length = 394

 Score = 40.1 bits (20), Expect = 0.091
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                       
Query: 355 ggcttcttgatgccgttcttgtgcgccttgaacgattggttatgcgccgtgtggttcttc 414
           |||||||| || || ||||||||   |||| | ||||||||||| || ||||| ||||| 
Sbjct: 141 ggcttcttaattccattcttgtgattcttgtaagattggttatgagctgtgtgattcttt 82

                       
Query: 415 gacttggccatc 426
           ||||| ||||||
Sbjct: 81  gactttgccatc 70



>gb|DR093200.1|DR093200 STRR1_6_E09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
           STRR1_6_E09_A033 5', mRNA sequence
          Length = 851

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 53  tgatggttttaattaaatt 71
           |||||||||||||||||||
Sbjct: 485 tgatggttttaattaaatt 467



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,552
Number of Sequences: 355925
Number of extensions: 60552
Number of successful extensions: 19373
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19368
Number of HSP's gapped (non-prelim): 5
length of query: 545
length of database: 217,277,237
effective HSP length: 19
effective length of query: 526
effective length of database: 210,514,662
effective search space: 110730712212
effective search space used: 110730712212
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)