BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.11
(514 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE496472.1|BE496472 NXCI_018_E06_F NXCI (Nsf Xylem Compr... 44 0.006
gb|BF220655.1|BF220655 NXCI_151_B08_F NXCI (Nsf Xylem Compr... 44 0.006
gb|AA739750.1|AA739750 515 PtIFG2 Pinus taeda cDNA clone 88... 42 0.022
gb|AW064862.1|AW064862 ST36G02 Pine TriplEx shoot tip libra... 42 0.022
gb|AL750057.1|AL750057 AL750057 AS Pinus pinaster cDNA clon... 42 0.022
gb|AL750066.1|AL750066 AL750066 AS Pinus pinaster cDNA clon... 42 0.022
gb|AL750433.1|AL750433 AL750433 RN Pinus pinaster cDNA clon... 42 0.022
gb|BX250562.1|BX250562 BX250562 Pinus pinaster differenciat... 42 0.022
gb|BX253067.1|BX253067 BX253067 Pinus pinaster differenciat... 42 0.022
gb|BX253197.1|BX253197 BX253197 Pinus pinaster differenciat... 42 0.022
gb|BX253596.1|BX253596 BX253596 Pinus pinaster differenciat... 42 0.022
gb|BX254128.1|BX254128 BX254128 Pinus pinaster differenciat... 42 0.022
gb|BX254430.1|BX254430 BX254430 Pinus pinaster differenciat... 42 0.022
gb|BX255376.1|BX255376 BX255376 Pinus pinaster differenciat... 42 0.022
gb|BF777488.1|BF777488 NXSI_069_B08_F NXSI (Nsf Xylem Side ... 42 0.022
gb|BG040067.1|BG040067 NXSI_106_A02_F NXSI (Nsf Xylem Side ... 42 0.022
gb|BG275893.1|BG275893 NXSI_149_B12_F NXSI (Nsf Xylem Side ... 42 0.022
gb|BM427978.1|BM427978 NXRV_007_B01_F NXRV (Nsf Xylem Root ... 42 0.022
gb|BM427981.1|BM427981 NXRV_007_B07_F NXRV (Nsf Xylem Root ... 42 0.022
gb|BM492562.1|BM492562 NXRV_028_B03_F NXRV (Nsf Xylem Root ... 42 0.022
gb|BQ701602.1|BQ701602 NXSI_111_E05_F NXSI (Nsf Xylem Side ... 42 0.022
gb|CD017537.1|CD017537 NXCI_124_H03_F NXCI (Nsf Xylem Compr... 42 0.022
gb|BX681303.1|BX681303 BX681303 RS Pinus pinaster cDNA clon... 42 0.022
gb|BX681367.1|BX681367 BX681367 RS Pinus pinaster cDNA clon... 42 0.022
gb|BX682309.2|BX682309 BX682309 Pinus pinaster differenciat... 42 0.022
gb|CR392485.1|CR392485 CR392485 RN Pinus pinaster cDNA clon... 42 0.022
gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo lib... 42 0.022
gb|DN627179.1|DN627179 EST977995 Subtracted pine embryo lib... 42 0.022
gb|DN632513.1|DN632513 EST983329 Subtracted pine embryo lib... 42 0.022
gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo lib... 42 0.022
gb|DN633772.1|DN633772 EST984588 Subtracted pine embryo lib... 42 0.022
gb|DN633894.1|DN633894 EST984710 Subtracted pine embryo lib... 42 0.022
gb|DN634507.1|DN634507 EST985323 Subtracted pine embryo lib... 42 0.022
gb|DR686678.1|DR686678 EST1076756 Normalized pine embryo li... 42 0.022
>gb|BE496472.1|BE496472 NXCI_018_E06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_E06 5' similar to Arabidopsis
thaliana sequence At3g06700 ribosomal protein L29,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 519
Score = 44.1 bits (22), Expect = 0.006
Identities = 115/146 (78%)
Strand = Plus / Plus
Query: 112 agatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacg 171
||||||| ||||| ||||| ||||| || |||||||| || |||||| |||||||| |
Sbjct: 22 agatggcaaagtcaaagaatcacacagctcacaaccaatcttacaagaatcacaagaatg 81
Query: 172 gcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcc 231
| || |||||||| || ||| |||| || || | || ||||||||||| |||||||
Sbjct: 82 gaattaagaagccaaaaaagcacaggcacacatcaagaaaagggatggacccaaagttcc 141
Query: 232 tgaggaacctgaggtattcaaggaag 257
| || |||| ||||||| | ||||||
Sbjct: 142 taagaaaccagaggtatgctaggaag 167
>gb|BF220655.1|BF220655 NXCI_151_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_151_B08 5' similar to Arabidopsis
thaliana sequence At3g06700 ribosomal protein L29,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 308
Score = 44.1 bits (22), Expect = 0.006
Identities = 115/146 (78%)
Strand = Plus / Plus
Query: 112 agatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacg 171
||||||| ||||| ||||| ||||| || |||||||| || |||||| |||||||| |
Sbjct: 22 agatggcaaagtcaaagaatcacacagctcacaaccaatcttacaagaatcacaagaatg 81
Query: 172 gcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcc 231
| || |||||||| || ||| |||| || || | || ||||||||||| |||||||
Sbjct: 82 gaattaagaagccaaaaaagcacaggcacacatcaagaaaagggatggacccaaagttcc 141
Query: 232 tgaggaacctgaggtattcaaggaag 257
| || |||| ||||||| | ||||||
Sbjct: 142 taagaaaccagaggtatgctaggaag 167
>gb|AA739750.1|AA739750 515 PtIFG2 Pinus taeda cDNA clone 8831M 3', mRNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 136 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 180
>gb|AW064862.1|AW064862 ST36G02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST36G02, mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 159 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 203
>gb|AL750057.1|AL750057 AL750057 AS Pinus pinaster cDNA clone AS05C09 similar to RP L29,
mRNA sequence
Length = 192
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 140 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 184
>gb|AL750066.1|AL750066 AL750066 AS Pinus pinaster cDNA clone AS05D06 similar to RP L29,
mRNA sequence
Length = 525
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 140 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 184
>gb|AL750433.1|AL750433 AL750433 RN Pinus pinaster cDNA clone RN02E01 similar to RP L29,
mRNA sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 148 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 192
>gb|BX250562.1|BX250562 BX250562 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038E10 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 418
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 148 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 192
>gb|BX253067.1|BX253067 BX253067 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077D12 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 148 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 192
>gb|BX253197.1|BX253197 BX253197 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079F06, mRNA sequence
Length = 543
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 146 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 190
>gb|BX253596.1|BX253596 BX253596 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085G02 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 146 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 190
>gb|BX254128.1|BX254128 BX254128 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093G10, mRNA sequence
Length = 523
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 140 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 184
>gb|BX254430.1|BX254430 BX254430 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098E06 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 146 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 190
>gb|BX255376.1|BX255376 BX255376 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005B03 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 148 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 192
>gb|BF777488.1|BF777488 NXSI_069_B08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_B08 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 141 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 185
>gb|BG040067.1|BG040067 NXSI_106_A02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_A02 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 141 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 185
>gb|BG275893.1|BG275893 NXSI_149_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_B12 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 511
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 153 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 197
>gb|BM427978.1|BM427978 NXRV_007_B01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_007_B01 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 376
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 151 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 195
>gb|BM427981.1|BM427981 NXRV_007_B07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_007_B07 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 333
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 151 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 195
>gb|BM492562.1|BM492562 NXRV_028_B03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_028_B03 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 431
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 151 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 195
>gb|BQ701602.1|BQ701602 NXSI_111_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_111_E05 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 141 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 185
>gb|CD017537.1|CD017537 NXCI_124_H03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_124_H03 5' similar to Arabidopsis
thaliana sequence At3g06700 ribosomal protein L29,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 134
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 22 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 66
>gb|BX681303.1|BX681303 BX681303 RS Pinus pinaster cDNA clone RS56G05, mRNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 79 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 123
>gb|BX681367.1|BX681367 BX681367 RS Pinus pinaster cDNA clone RS57G05, mRNA sequence
Length = 237
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 82 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 126
>gb|BX682309.2|BX682309 BX682309 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114H10 similar to 60S ribosomal protein L29,
mRNA sequence
Length = 563
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 150 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 194
>gb|CR392485.1|CR392485 CR392485 RN Pinus pinaster cDNA clone RN33A11, mRNA sequence
Length = 523
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 215 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 259
>gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAD96, mRNA sequence
Length = 403
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 179 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 223
>gb|DN627179.1|DN627179 EST977995 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAF47, mRNA sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 170 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 214
>gb|DN632513.1|DN632513 EST983329 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACQ17, mRNA sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 170 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 214
>gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADA52, mRNA sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 170 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 214
>gb|DN633772.1|DN633772 EST984588 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADB75, mRNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 225 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 181
>gb|DN633894.1|DN633894 EST984710 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADD68, mRNA sequence
Length = 393
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 225 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 181
>gb|DN634507.1|DN634507 EST985323 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADN68, mRNA sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 170 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 214
>gb|DR686678.1|DR686678 EST1076756 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI65 3' end, mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.022
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 213 gggatggaccccaagttcctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||||| || |||| ||||||| | ||||||
Sbjct: 166 gggatggacccaaagttcctaagaaaccagaggtatgctaggaag 210
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,466
Number of Sequences: 355925
Number of extensions: 56466
Number of successful extensions: 14812
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14777
Number of HSP's gapped (non-prelim): 35
length of query: 514
length of database: 217,277,237
effective HSP length: 19
effective length of query: 495
effective length of database: 210,514,662
effective search space: 104204757690
effective search space used: 104204757690
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)