BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.8
(708 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX249232.1|BX249232 BX249232 Pinus pinaster differenciat... 78 5e-013
gb|BF517400.1|BF517400 NXSI_021_A11_F NXSI (Nsf Xylem Side ... 70 1e-010
gb|BQ702492.1|BQ702492 NXSI_129_C05_F NXSI (Nsf Xylem Side ... 70 1e-010
gb|DR165914.1|DR165914 RTPHOS1_8_D02.b1_A029 Roots minus ph... 68 5e-010
gb|DR165992.1|DR165992 RTPHOS1_8_D02.g1_A029 Roots minus ph... 68 5e-010
gb|BE996875.1|BE996875 NXCI_103_F01_F NXCI (Nsf Xylem Compr... 66 2e-009
gb|BQ655915.1|BQ655915 NXRV100_H06_F NXRV (Nsf Xylem Root w... 66 2e-009
gb|DR744427.1|DR744427 RTCU1_22_H09.b1_A029 Roots plus adde... 66 2e-009
gb|DR744504.1|DR744504 RTCU1_22_H09.g1_A029 Roots plus adde... 66 2e-009
gb|AW697938.1|AW697938 NXNV_072_C07_F Nsf Xylem Normal wood... 62 3e-008
gb|AW870197.1|AW870197 NXNV_125_C12_F Nsf Xylem Normal wood... 62 3e-008
gb|CF395509.1|CF395509 RTDS2_12_E02.b1_A021 Drought-stresse... 60 1e-007
gb|CF395603.1|CF395603 RTDS2_12_E02.g1_A021 Drought-stresse... 60 1e-007
gb|CF397709.1|CF397709 RTDS3_1_E10.b2_A022 Drought-stressed... 60 1e-007
gb|CF670979.1|CF670979 RTCNT1_53_H03.g1_A029 Root control P... 60 1e-007
gb|CO160294.1|CO160294 FLD1_20_B12.b1_A029 Root flooded Pin... 60 1e-007
gb|CO160371.1|CO160371 FLD1_20_B12.g1_A029 Root flooded Pin... 60 1e-007
gb|CO161874.1|CO161874 FLD1_31_F01.g1_A029 Root flooded Pin... 60 1e-007
gb|CO163824.1|CO163824 FLD1_44_B07.b1_A029 Root flooded Pin... 60 1e-007
gb|CO164148.1|CO164148 FLD1_46_D06.b1_A029 Root flooded Pin... 60 1e-007
gb|CO164222.1|CO164222 FLD1_46_D06.g1_A029 Root flooded Pin... 60 1e-007
gb|CO165879.1|CO165879 FLD1_57_F05.g1_A029 Root flooded Pin... 60 1e-007
gb|CO166083.1|CO166083 FLD1_59_E04.b1_A029 Root flooded Pin... 60 1e-007
gb|CO166149.1|CO166149 FLD1_59_E04.g1_A029 Root flooded Pin... 60 1e-007
gb|CO170935.1|CO170935 NDL1_17_H11.g1_A029 Needles control ... 60 1e-007
gb|CO196919.1|CO196919 GEO1_2_C11.g1_A029 Root gravitropism... 60 1e-007
gb|DN453025.1|DN453025 EST948824 Sequencing ESTs from loblo... 60 1e-007
gb|DN612026.1|DN612026 EST965076 Subtracted pine embryo lib... 60 1e-007
gb|DN612056.1|DN612056 EST965106 Subtracted pine embryo lib... 60 1e-007
gb|DN612387.1|DN612387 EST965437 Subtracted pine embryo lib... 60 1e-007
gb|DN615021.1|DN615021 EST968071 Subtracted pine embryo lib... 60 1e-007
gb|DN627086.1|DN627086 EST977902 Subtracted pine embryo lib... 60 1e-007
gb|DN632932.1|DN632932 EST983748 Subtracted pine embryo lib... 60 1e-007
gb|DN633401.1|DN633401 EST984217 Subtracted pine embryo lib... 60 1e-007
gb|DR012626.1|DR012626 HEAT1_14_B09.b1_A029 Root at 37 C fo... 60 1e-007
gb|DR012706.1|DR012706 HEAT1_14_B09.g1_A029 Root at 37 C fo... 60 1e-007
gb|DR013434.1|DR013434 HEAT1_19_G06.b1_A029 Root at 37 C fo... 60 1e-007
gb|DR013522.1|DR013522 HEAT1_19_G06.g1_A029 Root at 37 C fo... 60 1e-007
gb|DR047515.1|DR047515 RTBOR1_1_C01.g1_A029 Roots plus adde... 60 1e-007
gb|DR048766.1|DR048766 RTBOR1_11_D03.b1_A029 Roots plus add... 60 1e-007
gb|DR048846.1|DR048846 RTBOR1_11_D03.g1_A029 Roots plus add... 60 1e-007
gb|DR049543.1|DR049543 RTBOR1_17_H05.b1_A029 Roots plus add... 60 1e-007
gb|DR049615.1|DR049615 RTBOR1_17_H05.g1_A029 Roots plus add... 60 1e-007
gb|DR049682.1|DR049682 RTBOR1_18_H05.b1_A029 Roots plus add... 60 1e-007
gb|DR049759.1|DR049759 RTBOR1_18_H05.g1_A029 Roots plus add... 60 1e-007
gb|DR055038.1|DR055038 RTCA1_21_D10.b1_A029 Roots minus cal... 60 1e-007
gb|DR055114.1|DR055114 RTCA1_21_D10.g2_A029 Roots minus cal... 60 1e-007
gb|DR055813.1|DR055813 RTCA1_26_C08.b1_A029 Roots minus cal... 60 1e-007
gb|DR056990.1|DR056990 RTNIT1_1_H01.g1_A029 Roots minus nit... 60 1e-007
gb|DR089510.1|DR089510 RTAL1_9_D09.b1_A029 Roots plus added... 60 1e-007
gb|DR089589.1|DR089589 RTAL1_9_D09.g1_A029 Roots plus added... 60 1e-007
gb|DR119458.1|DR119458 RTMG1_23_H07.b1_A029 Roots minus mag... 60 1e-007
gb|DR119498.1|DR119498 RTMG1_23_D07.g1_A029 Roots minus mag... 60 1e-007
gb|DR119543.1|DR119543 RTMG1_23_H07.g1_A029 Roots minus mag... 60 1e-007
gb|DR385356.1|DR385356 RTHG1_8_E03.b1_A029 Roots plus added... 60 1e-007
gb|DR385439.1|DR385439 RTHG1_8_E03.g1_A029 Roots plus added... 60 1e-007
gb|DR742745.1|DR742745 RTCU1_6_E09.g2_A029 Roots plus added... 60 1e-007
gb|DR743632.1|DR743632 RTCU1_17_E02.b1_A029 Roots plus adde... 60 1e-007
gb|DR743705.1|DR743705 RTCU1_17_E02.g1_A029 Roots plus adde... 60 1e-007
gb|DT625058.1|DT625058 EST1159333 Sequencing ESTs from lobl... 60 1e-007
gb|AA739705.1|AA739705 470 PtIFG2 Pinus taeda cDNA clone 87... 58 5e-007
gb|AW290204.1|AW290204 NXNV015F01F Nsf Xylem Normal wood Ve... 56 2e-006
gb|AW290283.1|AW290283 NXNV017E08F Nsf Xylem Normal wood Ve... 56 2e-006
gb|AL750053.1|AL750053 AL750053 AS Pinus pinaster cDNA clon... 56 2e-006
gb|BX253341.1|BX253341 BX253341 Pinus pinaster differenciat... 56 2e-006
gb|BX254897.1|BX254897 BX254897 Pinus pinaster differenciat... 56 2e-006
gb|BX255469.1|BX255469 BX255469 Pinus pinaster differenciat... 56 2e-006
gb|AW784112.1|AW784112 NXNV_117_H11_F Nsf Xylem Normal wood... 56 2e-006
gb|BF777301.1|BF777301 NXSI_067_E08_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG041028.1|BG041028 NXSI_117_G12_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BQ702501.1|BQ702501 NXSI_129_D02_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|CD026868.1|CD026868 NXNV015F01 Nsf Xylem Normal wood Ver... 56 2e-006
gb|CD026919.1|CD026919 NXNV017E08 Nsf Xylem Normal wood Ver... 56 2e-006
gb|CF477588.1|CF477588 RTWW3_8_A07.g1_A022 Well-watered lob... 56 2e-006
gb|CF670905.1|CF670905 RTCNT1_53_H03.b1_A029 Root control P... 56 2e-006
gb|BX683032.1|BX683032 BX683032 Pinus pinaster differenciat... 56 2e-006
gb|BX784105.1|BX784105 BX784105 Pinus pinaster differenciat... 56 2e-006
gb|DR056289.1|DR056289 RTCA1_29_G05.b1_A029 Roots minus cal... 56 2e-006
gb|DR120936.1|DR120936 RTMG1_1_D02.b1_A029 Roots minus magn... 56 2e-006
gb|DR116604.1|DR116604 RTMG1_1_D02.g1_A029 Roots minus magn... 56 2e-006
gb|DR742300.1|DR742300 RTCU1_3_D04.b1_A029 Roots plus added... 56 2e-006
gb|BF220795.1|BF220795 NXCI_152_A10_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BF777166.1|BF777166 NXSI_066_A06_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BF777288.1|BF777288 NXSI_067_D06_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BF778141.1|BF778141 NXSI_077_F05_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BQ701825.1|BQ701825 NXSI_121_A03_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|AI919974.1|AI919974 1504 Pine Lambda Zap Xylem library P... 48 5e-004
gb|BF518051.1|BF518051 NXSI_030_D11_F NXSI (Nsf Xylem Side ... 46 0.002
gb|BM367986.1|BM367986 NXLV_055_H11_F NXLV (Nsf Xylem Late ... 46 0.002
gb|BM367987.1|BM367987 NXLV_055_H12_F NXLV (Nsf Xylem Late ... 46 0.002
gb|DR047436.1|DR047436 RTBOR1_1_C01.b1_A029 Roots plus adde... 46 0.002
gb|BM428399.1|BM428399 NXRV_016_C01_F NXRV (Nsf Xylem Root ... 44 0.008
gb|CO196864.1|CO196864 GEO1_2_C11.b1_A029 Root gravitropism... 42 0.030
gb|BG039983.1|BG039983 NXSI_104_D01_F NXSI (Nsf Xylem Side ... 40 0.12
gb|BQ698926.1|BQ698926 NXRV117_B11_F NXRV (Nsf Xylem Root w... 40 0.12
gb|CF385064.1|CF385064 RTDR1_1_C08.g1_A015 Loblolly pine ro... 38 0.47
gb|CF387719.1|CF387719 RTDR1_19_F04.g1_A015 Loblolly pine r... 38 0.47
gb|CF473556.1|CF473556 RTWW2_3_G07.g1_A021 Well-watered lob... 38 0.47
gb|BX678190.1|BX678190 BX678190 RN Pinus pinaster cDNA clon... 38 0.47
gb|CV035011.1|CV035011 RTNACL1_13_C06.b1_A029 Roots plus ad... 38 0.47
gb|DR057936.1|DR057936 RTNIT1_8_E07.g1_A029 Roots minus nit... 38 0.47
gb|DR060304.1|DR060304 RTNIT1_27_B08.b1_A029 Roots minus ni... 38 0.47
gb|DR182028.1|DR182028 RTMNUT1_42_A12.g1_A029 Roots minus m... 38 0.47
>gb|BX249232.1|BX249232 BX249232 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP021E12, mRNA sequence
Length = 462
Score = 77.8 bits (39), Expect = 5e-013
Identities = 153/191 (80%)
Strand = Plus / Minus
Query: 373 ggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtt 432
|||||||| || ||||| ||||||| |||||||||||| || || ||||| ||||||||
Sbjct: 237 ggatgctttgcttcggcatgctccctgcacttcacttctgttgtagtacagatgaatgtc 178
Query: 433 tgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggctcccc 492
||||| || || |||||||| ||| |||| || |||||||| || || || || || ||
Sbjct: 177 tgcatacagaccttgcactgaatggtcatcgctttcttgtttgtttcaagttgactacct 118
Query: 493 ttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttg 552
| || | ||| ||||||||| || | ||| ||||||||||||| |||||||| |||
Sbjct: 117 ctagcgcacttcatcttctccagatttctctctcgggccatcttggctttctggccattg 58
Query: 553 ccaccgcccat 563
||||| |||||
Sbjct: 57 ccaccccccat 47
>gb|BF517400.1|BF517400 NXSI_021_A11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_021_A11 5' similar to Arabidopsis thaliana
sequence At2g23090 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 430
Score = 69.9 bits (35), Expect = 1e-010
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 373 ggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtt 432
|||||||| || || || ||||||| |||||||||||| || || ||||| ||||||||
Sbjct: 233 ggatgctttgcttccgcatgctccctgcacttcacttctgttgtagtacagatgaatgtc 174
Query: 433 tgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggctcccc 492
||||| || || |||||||| ||| |||| || |||||||| || || ||||| || ||
Sbjct: 173 tgcatacagaccttgcactgaatggtcatcgctttcttgtttgtttcaagctgactacct 114
Query: 493 ttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttg 552
| | | ||| ||||||||| || | ||| ||||||||||||| |||||||| |||
Sbjct: 113 ctagagcacttcatcttctccagatttctctctcgggccatcttggctttctggccattg 54
Query: 553 ccaccgcccat 563
||||| |||||
Sbjct: 53 ccaccccccat 43
>gb|BQ702492.1|BQ702492 NXSI_129_C05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_C05 5' similar to Arabidopsis thaliana
sequence At2g23090 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 684
Score = 69.9 bits (35), Expect = 1e-010
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 373 ggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtt 432
|||||||| || || || ||||||| |||||||||||| || || ||||| ||||||||
Sbjct: 208 ggatgctttgcttccgcatgctccctgcacttcacttctgttgtagtacagatgaatgtc 149
Query: 433 tgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggctcccc 492
||||| || || |||||||| ||| |||| || |||||||| || || ||||| || ||
Sbjct: 148 tgcatacagaccttgcactgaatggtcatcgctttcttgtttgtttcaagctgactacct 89
Query: 493 ttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttg 552
| | | ||| ||||||||| || | ||| ||||||||||||| |||||||| |||
Sbjct: 88 ctagagcacttcatcttctccagatttctctctcgggccatcttggctttctggccattg 29
Query: 553 ccaccgcccat 563
||||| |||||
Sbjct: 28 ccaccccccat 18
>gb|DR165914.1|DR165914 RTPHOS1_8_D02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_D02_A029 3', mRNA sequence
Length = 817
Score = 67.9 bits (34), Expect = 5e-010
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 342 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 401
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || ||||| ||||||||||||||||| || ||||||||
Sbjct: 402 tccctacacttgacttctgatgttgtacagatgaatgtttgcatgcagaccttgcactga 461
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 462 atattcattgccttcttgtttgtctc 487
>gb|DR165992.1|DR165992 RTPHOS1_8_D02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_D02_A029 5', mRNA sequence
Length = 789
Score = 67.9 bits (34), Expect = 5e-010
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 314 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 373
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || ||||| ||||||||||||||||| || ||||||||
Sbjct: 374 tccctacacttgacttctgatgttgtacagatgaatgtttgcatgcagaccttgcactga 433
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 434 atattcattgccttcttgtttgtctc 459
>gb|BE996875.1|BE996875 NXCI_103_F01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_103_F01 5' similar to Arabidopsis
thaliana sequence At2g23090 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 389
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 373 ggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtt 432
|||||||| || || || ||||||| |||||||||||| || || ||||| ||||||||
Sbjct: 211 ggatgctttgcttccgcatgctccctgcacttcacttctgttgtagtacagatgaatgtc 152
Query: 433 tgcatgcacactttgcactggatgctcatggccttcttgtt 473
||||| || || |||||||| ||| |||| || ||||||||
Sbjct: 151 tgcatacagaccttgcactgaatggtcatcgctttcttgtt 111
>gb|BQ655915.1|BQ655915 NXRV100_H06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV100_H06 5' similar to Arabidopsis thaliana
sequence At2g23090 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 590
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 373 ggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtt 432
|||||||| || || || ||||||| |||||||||||| || || ||||| ||||||||
Sbjct: 343 ggatgctttgcttccgcatgctccctgcacttcacttctgttgtagtacagatgaatgtc 284
Query: 433 tgcatgcacactttgcactggatgctcatggccttcttgtt 473
||||| || || |||||||| ||| |||| || ||||||||
Sbjct: 283 tgcatacagaccttgcactgaatggtcatcgctttcttgtt 243
>gb|DR744427.1|DR744427 RTCU1_22_H09.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_22_H09_A029 3', mRNA sequence
Length = 465
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 373 ggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtt 432
|||||||| || || || ||||||| |||||||||||| || || ||||| ||||||||
Sbjct: 225 ggatgctttgcttccgcatgctccctgcacttcacttctgttgtagtacagatgaatgtc 284
Query: 433 tgcatgcacactttgcactggatgctcatggccttcttgtt 473
||||| || || |||||||| ||| |||| || ||||||||
Sbjct: 285 tgcatacagaccttgcactgaatggtcatcgctttcttgtt 325
>gb|DR744504.1|DR744504 RTCU1_22_H09.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_22_H09_A029 5', mRNA sequence
Length = 454
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 373 ggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtt 432
|||||||| || || || ||||||| |||||||||||| || || ||||| ||||||||
Sbjct: 210 ggatgctttgcttccgcatgctccctgcacttcacttctgttgtagtacagatgaatgtc 269
Query: 433 tgcatgcacactttgcactggatgctcatggccttcttgtt 473
||||| || || |||||||| ||| |||| || ||||||||
Sbjct: 270 tgcatacagaccttgcactgaatggtcatcgctttcttgtt 310
>gb|AW697938.1|AW697938 NXNV_072_C07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_072_C07 5' similar to Arabidopsis thaliana
sequence At2g23090 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 312
Score = 61.9 bits (31), Expect = 3e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 391 tgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcac 450
||||||| |||||||||||| || || ||||| |||||||| ||||| || || ||||||
Sbjct: 198 tgctccctgcacttcacttctgttgtagtacagatgaatgtctgcatacagaccttgcac 139
Query: 451 tggatgctcatggccttcttgtt 473
|| ||| |||| || ||||||||
Sbjct: 138 tgaatggtcatcgctttcttgtt 116
>gb|AW870197.1|AW870197 NXNV_125_C12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_125_C12 5' similar to Arabidopsis thaliana
sequence At2g23090 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 233
Score = 61.9 bits (31), Expect = 3e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 391 tgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcac 450
||||||| |||||||||||| || || ||||| |||||||| ||||| || || ||||||
Sbjct: 198 tgctccctgcacttcacttctgttgtagtacagatgaatgtctgcatacagaccttgcac 139
Query: 451 tggatgctcatggccttcttgtt 473
|| ||| |||| || ||||||||
Sbjct: 138 tgaatggtcatcgctttcttgtt 116
>gb|CF395509.1|CF395509 RTDS2_12_E02.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_12_E02_A021 3', mRNA sequence
Length = 562
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 249 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 190
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 189 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 130
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 129 atattcattgccttcttgtttgtctc 104
>gb|CF395603.1|CF395603 RTDS2_12_E02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_12_E02_A021 5', mRNA sequence
Length = 763
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 471 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 412
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 411 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 352
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 351 atattcattgccttcttgtttgtctc 326
>gb|CF397709.1|CF397709 RTDS3_1_E10.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_E10_A022 3', mRNA sequence
Length = 704
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 338 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 397
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 398 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 457
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 458 atattcattgccttcttgtttgtctc 483
>gb|CF670979.1|CF670979 RTCNT1_53_H03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_H03_A029 5', mRNA sequence
Length = 728
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 518 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 459
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 458 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 399
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 398 atattcattgccttcttgtttgtctc 373
>gb|CO160294.1|CO160294 FLD1_20_B12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_20_B12_A029 3', mRNA sequence
Length = 624
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 270 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 211
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 210 tccctacacttgacttctgatgttgtgcaaatgaatgtttgcatgcagaccttgcactga 151
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 150 atattcattgccttcttgtttgtctc 125
>gb|CO160371.1|CO160371 FLD1_20_B12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_20_B12_A029 5', mRNA sequence
Length = 770
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 600 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 541
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 540 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 481
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 480 atattcattgccttcttgtttgtctc 455
>gb|CO161874.1|CO161874 FLD1_31_F01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_31_F01_A029 5', mRNA sequence
Length = 702
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 210 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 269
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 270 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 329
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 330 atattcattgccttcttgtttgtctc 355
>gb|CO163824.1|CO163824 FLD1_44_B07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_44_B07_A029 3', mRNA sequence
Length = 864
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 597 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 656
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 657 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 716
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 717 atattcattgccttcttgtttgtctc 742
>gb|CO164148.1|CO164148 FLD1_46_D06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_D06_A029 3', mRNA sequence
Length = 815
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 455 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 396
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 395 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 336
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 335 atattcattgccttcttgtttgtctc 310
>gb|CO164222.1|CO164222 FLD1_46_D06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_D06_A029 5', mRNA sequence
Length = 821
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 442 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 383
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 382 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 323
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 322 atattcattgccttcttgtttgtctc 297
>gb|CO165879.1|CO165879 FLD1_57_F05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F05_A029 5', mRNA sequence
Length = 765
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 407 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 348
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 347 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 288
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 287 atattcattgccttcttgtttgtctc 262
>gb|CO166083.1|CO166083 FLD1_59_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E04_A029 3', mRNA sequence
Length = 729
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 388 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 329
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 328 tccctacacttgacttctgatgttgtgcaaatgaatgtttgcatgcaaaccttgcactga 269
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 268 atattcattgccttcttgtttgtctc 243
>gb|CO166149.1|CO166149 FLD1_59_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E04_A029 5', mRNA sequence
Length = 797
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 443 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 384
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 383 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 324
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 323 atattcattgccttcttgtttgtctc 298
>gb|CO170935.1|CO170935 NDL1_17_H11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_H11_A029 5', mRNA sequence
Length = 830
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 449 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 390
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 389 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 330
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 329 atattcattgccttcttgtttgtctc 304
>gb|CO196919.1|CO196919 GEO1_2_C11.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_2_C11_A029 5', mRNA sequence
Length = 789
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 536 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 477
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 476 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 417
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 416 atattcattgccttcttgtttgtctc 391
>gb|DN453025.1|DN453025 EST948824 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFO48 5' end, mRNA sequence
Length = 822
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 468 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 409
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 408 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 349
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 348 atattcattgccttcttgtttgtctc 323
>gb|DN612026.1|DN612026 EST965076 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB979, mRNA sequence
Length = 681
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 500 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 441
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 440 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 381
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 380 atattcattgccttcttgtttgtctc 355
>gb|DN612056.1|DN612056 EST965106 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABA21, mRNA sequence
Length = 684
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 497 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 438
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 437 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 378
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 377 atattcattgccttcttgtttgtctc 352
>gb|DN612387.1|DN612387 EST965437 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABE88, mRNA sequence
Length = 684
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 497 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 438
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 437 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 378
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 377 atattcattgccttcttgtttgtctc 352
>gb|DN615021.1|DN615021 EST968071 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSACA90, mRNA sequence
Length = 684
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 497 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 438
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 437 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 378
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 377 atattcattgccttcttgtttgtctc 352
>gb|DN627086.1|DN627086 EST977902 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAE15, mRNA sequence
Length = 830
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 495 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 436
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 435 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 376
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 375 atattcattgccttcttgtttgtctc 350
>gb|DN632932.1|DN632932 EST983748 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACX36, mRNA sequence
Length = 788
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 495 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 436
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 435 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 376
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 375 atattcattgccttcttgtttgtctc 350
>gb|DN633401.1|DN633401 EST984217 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAD490, mRNA sequence
Length = 823
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 481 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 422
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 421 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 362
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 361 atattcattgccttcttgtttgtctc 336
>gb|DR012626.1|DR012626 HEAT1_14_B09.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_B09_A029 3', mRNA sequence
Length = 754
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 413 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 354
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 353 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 294
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 293 atattcattgccttcttgtttgtctc 268
>gb|DR012706.1|DR012706 HEAT1_14_B09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_B09_A029 5', mRNA sequence
Length = 816
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 575 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 516
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 515 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 456
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 455 atattcattgccttcttgtttgtctc 430
>gb|DR013434.1|DR013434 HEAT1_19_G06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_G06_A029 3', mRNA sequence
Length = 704
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 351 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 292
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 291 tccctacacttgacttctgatgttgtgcaaatgaatgtttgcatgcagaccttgcactga 232
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 231 atattcattgccttcttgtttgtctc 206
>gb|DR013522.1|DR013522 HEAT1_19_G06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_G06_A029 5', mRNA sequence
Length = 681
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 471 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 412
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 411 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 352
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 351 atattcattgccttcttgtttgtctc 326
>gb|DR047515.1|DR047515 RTBOR1_1_C01.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_1_C01_A029 5', mRNA sequence
Length = 597
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 473 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 414
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 413 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 354
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 353 atattcattgccttcttgtttgtctc 328
>gb|DR048766.1|DR048766 RTBOR1_11_D03.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_11_D03_A029 3', mRNA sequence
Length = 813
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 345 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 286
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 285 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 226
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 225 atattcattgccttcttgtttgtctc 200
>gb|DR048846.1|DR048846 RTBOR1_11_D03.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_11_D03_A029 5', mRNA sequence
Length = 794
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 444 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 385
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 384 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 325
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 324 atattcattgccttcttgtttgtctc 299
>gb|DR049543.1|DR049543 RTBOR1_17_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_17_H05_A029 3', mRNA sequence
Length = 688
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 247 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 306
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 307 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 366
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 367 atattcattgccttcttgtttgtctc 392
>gb|DR049615.1|DR049615 RTBOR1_17_H05.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_17_H05_A029 5', mRNA sequence
Length = 791
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 432 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 491
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 492 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 551
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 552 atattcattgccttcttgtttgtctc 577
>gb|DR049682.1|DR049682 RTBOR1_18_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_H05_A029 3', mRNA sequence
Length = 662
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 294 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 235
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 234 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 175
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 174 atattcattgccttcttgtttgtctc 149
>gb|DR049759.1|DR049759 RTBOR1_18_H05.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_H05_A029 5', mRNA sequence
Length = 722
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 447 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 388
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 387 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 328
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 327 atattcattgccttcttgtttgtctc 302
>gb|DR055038.1|DR055038 RTCA1_21_D10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_21_D10_A029 3', mRNA sequence
Length = 737
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 290 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 231
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 230 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 171
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 170 atattcattgccttcttgtttgtctc 145
>gb|DR055114.1|DR055114 RTCA1_21_D10.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_21_D10_A029 5', mRNA sequence
Length = 643
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 443 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 384
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 383 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 324
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 323 atattcattgccttcttgtttgtctc 298
>gb|DR055813.1|DR055813 RTCA1_26_C08.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_C08_A029 3', mRNA sequence
Length = 743
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 428 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 369
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 368 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 309
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 308 atattcattgccttcttgtttgtctc 283
>gb|DR056990.1|DR056990 RTNIT1_1_H01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_H01_A029 5', mRNA sequence
Length = 764
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 329 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 388
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 389 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 448
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 449 atattcattgccttcttgtttgtctc 474
>gb|DR089510.1|DR089510 RTAL1_9_D09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_9_D09_A029 3', mRNA sequence
Length = 772
Score = 60.0 bits (30), Expect = 1e-007
Identities = 117/146 (80%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| ||||| || |||||||| || || || | |||||| ||||| || || || |||
Sbjct: 403 ttcttgagatgaggaaagcactgataaacatcagccttggggtgctttgcttcagcatgc 344
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|||| ||||| ||||| | || || || ||||||||||||||||| || ||||||||
Sbjct: 343 tccctacacttgacttctgatgttgtgcagatgaatgtttgcatgcagaccttgcactga 284
Query: 454 atgctcatggccttcttgttggtctc 479
|| |||| ||||||||||| |||||
Sbjct: 283 atattcattgccttcttgtttgtctc 258
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,406
Number of Sequences: 355925
Number of extensions: 64406
Number of successful extensions: 18462
Number of sequences better than 0.5: 103
Number of HSP's better than 0.5 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18269
Number of HSP's gapped (non-prelim): 193
length of query: 708
length of database: 217,277,237
effective HSP length: 19
effective length of query: 689
effective length of database: 210,514,662
effective search space: 145044602118
effective search space used: 145044602118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)