BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR695245.1|DR695245 EST1085338 Normalized pine embryo li... 42 0.031
gb|DT631829.1|DT631829 EST1146760 Normalized pine embryo li... 42 0.031
gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinu... 40 0.12
gb|CX651712.1|CX651712 COLD1_54_G01.b1_A029 Root cold Pinus... 40 0.12
gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus add... 40 0.12
gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pin... 40 0.12
gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root w... 38 0.48
gb|CF395459.1|CF395459 RTDS2_11_D05.g1_A021 Drought-stresse... 38 0.48
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 38 0.48
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 38 0.48
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 38 0.48
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 38 0.48
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 38 0.48
gb|CO362120.1|CO362120 RTK1_1_H08.b1_A029 Roots minus potas... 36 1.9
gb|DR055031.1|DR055031 RTCA1_21_C10.b1_A029 Roots minus cal... 36 1.9
gb|DR055103.1|DR055103 RTCA1_21_C10.g2_A029 Roots minus cal... 36 1.9
gb|CZ896172.1|CZ896172 226_2_12341210_5489_37963_035 Pine m... 34 7.5
gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side ... 34 7.5
gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered lo... 34 7.5
gb|CF663944.1|CF663944 RTCNT1_6_E05.b1_A029 Root control Pi... 34 7.5
gb|CO199630.1|CO199630 GEO2_2_B10.g1_A032 Root gravitropism... 34 7.5
gb|CX651450.1|CX651450 COLD1_52_B03.g1_A029 Root cold Pinus... 34 7.5
gb|DR049458.1|DR049458 RTBOR1_16_E10.g1_A029 Roots plus add... 34 7.5
gb|DR070024.1|DR070024 RTDK1_10_G03.g1_A029 Roots, dark Pin... 34 7.5
gb|DR689929.1|DR689929 EST1080015 Normalized pine embryo li... 34 7.5
gb|DT635780.1|DT635780 EST1150711 Normalized pine embryo li... 34 7.5
>gb|DR695245.1|DR695245 EST1085338 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEM52 3' end, mRNA sequence
Length = 788
Score = 42.1 bits (21), Expect = 0.031
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 122 atggatgtttcacatggtcatccaggaca 150
|||||||||||||||||| |||||||||
Sbjct: 670 atggatgtttcacatggttctccaggaca 698
>gb|DT631829.1|DT631829 EST1146760 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD23 3' end, mRNA sequence
Length = 817
Score = 42.1 bits (21), Expect = 0.031
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 122 atggatgtttcacatggtcatccaggaca 150
|||||||||||||||||| |||||||||
Sbjct: 531 atggatgtttcacatggttctccaggaca 559
Score = 34.2 bits (17), Expect = 7.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 362 ttcagggatggagtcagtgaa 382
||||| |||||||||||||||
Sbjct: 792 ttcagagatggagtcagtgaa 812
>gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H02_A029 5', mRNA sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 359 attttcagggatggagtcagtgaa 382
|||||||| |||||||||||||||
Sbjct: 65 attttcagagatggagtcagtgaa 88
>gb|CX651712.1|CX651712 COLD1_54_G01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_G01_A029 3', mRNA sequence
Length = 291
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 359 attttcagggatggagtcagtgaa 382
|||||||| |||||||||||||||
Sbjct: 58 attttcagagatggagtcagtgaa 35
>gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 5', mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 359 attttcagggatggagtcagtgaa 382
|||||||| |||||||||||||||
Sbjct: 266 attttcagagatggagtcagtgaa 289
>gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_B02_A029 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 359 attttcagggatggagtcagtgaa 382
|||||||| |||||||||||||||
Sbjct: 110 attttcagagatggagtcagtgaa 133
>gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_D02 5' similar to Arabidopsis thaliana
sequence At1g69440 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 529 caatgttcttcctggaactgtggtgga 555
|||||||| |||||| |||||||||||
Sbjct: 219 caatgttcctcctggcactgtggtgga 245
>gb|CF395459.1|CF395459 RTDS2_11_D05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_D05_A021 5', mRNA sequence
Length = 769
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 214 agcatcagtgcacacccaa 232
|||||||||||||||||||
Sbjct: 621 agcatcagtgcacacccaa 603
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 529 caatgttcttcctggaactgtggtgga 555
|||||||| |||||| |||||||||||
Sbjct: 85 caatgttcctcctggcactgtggtgga 111
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 529 caatgttcttcctggaactgtggtgga 555
|||||||| |||||| |||||||||||
Sbjct: 466 caatgttcctcctggcactgtggtgga 440
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 529 caatgttcttcctggaactgtggtgga 555
|||||||| |||||| |||||||||||
Sbjct: 719 caatgttcctcctggcactgtggtgga 693
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 529 caatgttcttcctggaactgtggtgga 555
|||||||| |||||| |||||||||||
Sbjct: 33 caatgttcctcctggcactgtggtgga 59
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.48
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 529 caatgttcttcctggaactgtggtgga 555
|||||||| |||||| |||||||||||
Sbjct: 580 caatgttcctcctggcactgtggtgga 606
>gb|CO362120.1|CO362120 RTK1_1_H08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_H08_A029 3', mRNA sequence
Length = 549
Score = 36.2 bits (18), Expect = 1.9
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 342 aaccagaacacataattatttt 363
|||||||||| |||||||||||
Sbjct: 310 aaccagaacaaataattatttt 289
>gb|DR055031.1|DR055031 RTCA1_21_C10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_21_C10_A029 3', mRNA sequence
Length = 661
Score = 36.2 bits (18), Expect = 1.9
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 408 ttgagctggatcagatcatcga 429
|||| |||||||||||||||||
Sbjct: 582 ttgacctggatcagatcatcga 561
>gb|DR055103.1|DR055103 RTCA1_21_C10.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_21_C10_A029 5', mRNA sequence
Length = 600
Score = 36.2 bits (18), Expect = 1.9
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 408 ttgagctggatcagatcatcga 429
|||| |||||||||||||||||
Sbjct: 555 ttgacctggatcagatcatcga 534
>gb|CZ896172.1|CZ896172 226_2_12341210_5489_37963_035 Pine methylation unfiltered library
(LibID: 226) Pinus taeda genomic, DNA sequence
Length = 699
Score = 34.2 bits (17), Expect = 7.5
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 60 tgcaagttgaagcatcttcgtcaat 84
|||||||||||||| |||| |||||
Sbjct: 680 tgcaagttgaagcaccttcatcaat 656
>gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_A04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 34.2 bits (17), Expect = 7.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 362 ttcagggatggagtcagtgaa 382
||||| |||||||||||||||
Sbjct: 7 ttcagagatggagtcagtgaa 27
>gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 5', mRNA sequence
Length = 736
Score = 34.2 bits (17), Expect = 7.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 362 ttcagggatggagtcagtgaa 382
||||| |||||||||||||||
Sbjct: 127 ttcagagatggagtcagtgaa 147
>gb|CF663944.1|CF663944 RTCNT1_6_E05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_E05_A029 3', mRNA sequence
Length = 401
Score = 34.2 bits (17), Expect = 7.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 362 ttcagggatggagtcagtgaa 382
||||| |||||||||||||||
Sbjct: 234 ttcagagatggagtcagtgaa 214
>gb|CO199630.1|CO199630 GEO2_2_B10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_2_B10_A032 5', mRNA sequence
Length = 731
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 546 ctgtggtggatagtaaa 562
|||||||||||||||||
Sbjct: 185 ctgtggtggatagtaaa 169
>gb|CX651450.1|CX651450 COLD1_52_B03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_B03_A029 5', mRNA sequence
Length = 652
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 197 cttatctctagatatag 213
|||||||||||||||||
Sbjct: 174 cttatctctagatatag 158
>gb|DR049458.1|DR049458 RTBOR1_16_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_16_E10_A029 5', mRNA sequence
Length = 599
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 600 cacatgctgggatgatt 616
|||||||||||||||||
Sbjct: 306 cacatgctgggatgatt 322
>gb|DR070024.1|DR070024 RTDK1_10_G03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_10_G03_A029 5', mRNA sequence
Length = 573
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 546 ctgtggtggatagtaaa 562
|||||||||||||||||
Sbjct: 569 ctgtggtggatagtaaa 553
>gb|DR689929.1|DR689929 EST1080015 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACP10 3' end, mRNA sequence
Length = 821
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 546 ctgtggtggatagtaaa 562
|||||||||||||||||
Sbjct: 478 ctgtggtggatagtaaa 462
>gb|DT635780.1|DT635780 EST1150711 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGK52 3' end, mRNA sequence
Length = 784
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 546 ctgtggtggatagtaaa 562
|||||||||||||||||
Sbjct: 486 ctgtggtggatagtaaa 470
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,737
Number of Sequences: 355925
Number of extensions: 87737
Number of successful extensions: 24555
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24515
Number of HSP's gapped (non-prelim): 40
length of query: 715
length of database: 217,277,237
effective HSP length: 19
effective length of query: 696
effective length of database: 210,514,662
effective search space: 146518204752
effective search space used: 146518204752
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)