BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.628
(1238 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW043146.1|AW043146 ST29H08 Pine TriplEx shoot tip libra... 103 2e-020
gb|AW043340.1|AW043340 ST32B12 Pine TriplEx shoot tip libra... 103 2e-020
gb|CO175084.1|CO175084 NDL1_48_F11.b1_A029 Needles control ... 103 2e-020
gb|CO364857.1|CO364857 RTK1_22_E10.b1_A029 Roots minus pota... 103 2e-020
gb|CV036257.1|CV036257 RTNACL1_57_H03.g1_A029 Roots plus ad... 103 2e-020
gb|CX647874.1|CX647874 COLD1_25_C01.b1_A029 Root cold Pinus... 103 2e-020
gb|DR091630.1|DR091630 RTAL1_22_H09.g1_A029 Roots plus adde... 103 2e-020
gb|AW042658.1|AW042658 ST23A07 Pine TriplEx shoot tip libra... 100 3e-019
gb|BM158718.1|BM158718 NXLV_039_C04_F NXLV (Nsf Xylem Late ... 96 4e-018
gb|BM158719.1|BM158719 NXLV_039_C05_F NXLV (Nsf Xylem Late ... 96 4e-018
gb|CF390177.1|CF390177 RTDR2_12_D12.g1_A021 Loblolly pine r... 96 4e-018
gb|CF395464.1|CF395464 RTDS2_11_H06.g1_A021 Drought-stresse... 96 4e-018
gb|CO175151.1|CO175151 NDL1_48_F11.g1_A029 Needles control ... 96 4e-018
gb|CO366328.1|CO366328 RTK1_27_E11.b1_A029 Roots minus pota... 96 4e-018
gb|DR012497.1|DR012497 HEAT1_13_E12.b1_A029 Root at 37 C fo... 96 4e-018
gb|DR682232.1|DR682232 EST1072307 Normalized pine embryo li... 96 4e-018
gb|DT630835.1|DT630835 EST1145766 Normalized pine embryo li... 96 4e-018
gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, compl... 96 4e-018
gb|AW754529.1|AW754529 PC03C03 Pine TriplEx pollen cone lib... 94 2e-017
gb|BF778071.1|BF778071 NXSI_081_F02_F NXSI (Nsf Xylem Side ... 94 2e-017
gb|CF473090.1|CF473090 RTDS1_1_D04.g1_A015 Drought-stressed... 94 2e-017
gb|CO200932.1|CO200932 RTCNT2_2_B11.g1_A029 Root control 2 ... 94 2e-017
gb|CV034720.1|CV034720 RTNACL1_11_D05.b1_A029 Roots plus ad... 94 2e-017
gb|DR092172.1|DR092172 RTAL1_27_C09.b1_A029 Roots plus adde... 94 2e-017
gb|DR165313.1|DR165313 RTPHOS1_4_D06.b1_A029 Roots minus ph... 94 2e-017
gb|BE662331.1|BE662331 ST84/ST84F09 Pine TriplEx shoot tip ... 90 3e-016
gb|BX254774.1|BX254774 BX254774 Pinus pinaster differenciat... 88 1e-015
gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calc... 88 1e-015
gb|AW043255.1|AW043255 ST31B10 Pine TriplEx shoot tip libra... 84 2e-014
gb|AW587778.1|AW587778 ST66G08 Pine TriplEx shoot tip libra... 78 1e-012
gb|BG040859.1|BG040859 NXSI_116_A03_F NXSI (Nsf Xylem Side ... 76 4e-012
gb|AW010688.1|AW010688 ST11A05 Pine TriplEx shoot tip libra... 74 2e-011
gb|AW042889.1|AW042889 ST26F06 Pine TriplEx shoot tip libra... 74 2e-011
gb|AW010325.1|AW010325 ST04G01 Pine TriplEx shoot tip libra... 72 6e-011
gb|AW587738.1|AW587738 ST66B09 Pine TriplEx shoot tip libra... 66 4e-009
gb|BQ700939.1|BQ700939 NXRV113_D09_F NXRV (Nsf Xylem Root w... 66 4e-009
gb|AW010529.1|AW010529 ST07H02 Pine TriplEx shoot tip libra... 62 6e-008
gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clon... 58 9e-007
gb|AW011371.1|AW011371 ST20A03 Pine TriplEx shoot tip libra... 56 4e-006
gb|AW056655.1|AW056655 ST54C03 Pine TriplEx shoot tip libra... 56 4e-006
gb|AW437935.1|AW437935 ST78E07 Pine TriplEx shoot tip libra... 56 4e-006
gb|BG318667.1|BG318667 NXPV_017_E12_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus pota... 50 2e-004
gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus ad... 50 2e-004
gb|AW226271.1|AW226271 ST80D09 Pine TriplEx shoot tip libra... 44 0.014
gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C fo... 42 0.054
gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus adde... 42 0.054
gb|BF609920.1|BF609920 NXSI_052_E11_F NXSI (Nsf Xylem Side ... 40 0.21
>gb|AW043146.1|AW043146 ST29H08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29H08, mRNA sequence
Length = 601
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 453 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 394
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 393 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 334
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 333 aactgaagaacaagggtcttatccttgttgctaaactcagggta 290
>gb|AW043340.1|AW043340 ST32B12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32B12, mRNA sequence
Length = 600
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 453 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 394
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 393 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 334
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 333 aactgaagaacaagggtcttatccttgttgctaaactcagggta 290
>gb|CO175084.1|CO175084 NDL1_48_F11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_F11_A029 3', mRNA sequence
Length = 570
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 329 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 270
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 269 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 210
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 209 aactgaagaacaagggtcttatccttgttgctaaactcagggta 166
>gb|CO364857.1|CO364857 RTK1_22_E10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_E10_A029 3', mRNA sequence
Length = 839
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 428 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 487
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 488 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 547
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 548 aactgaagaacaagggtcttatccttgttgctaaactcagggta 591
>gb|CV036257.1|CV036257 RTNACL1_57_H03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 5', mRNA sequence
Length = 633
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 401 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 342
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 341 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 282
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 281 aactgaagaacaagggtcttatccttgttgctaaactcagggta 238
>gb|CX647874.1|CX647874 COLD1_25_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C01_A029 3', mRNA sequence
Length = 851
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 433 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 492
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 493 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 552
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 553 aactgaagaacaagggtcttatccttgttgctaaactcagggta 596
>gb|DR091630.1|DR091630 RTAL1_22_H09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_22_H09_A029 5', mRNA sequence
Length = 762
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 411 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 352
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 351 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 292
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 291 aactgaagaacaagggtcttatccttgttgctaaactcagggta 248
>gb|AW042658.1|AW042658 ST23A07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23A07, mRNA sequence
Length = 573
Score = 99.6 bits (50), Expect = 3e-019
Identities = 134/162 (82%)
Strand = Plus / Minus
Query: 857 tggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatcacc 916
||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||||
Sbjct: 439 tggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttcacc 380
Query: 917 acccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagagaa 976
|| | ||| || ||||||||||| || || ||||| || || || ||||| ||||| ||
Sbjct: 379 acttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaaaa 320
Query: 977 ctgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||| || || |||||||||||||||||||| |||||||||||
Sbjct: 319 ctgaagaacaagggtcttatccttgttgctaaactcagggta 278
>gb|BM158718.1|BM158718 NXLV_039_C04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_C04 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 523
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 246 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 187
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 186 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 127
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 126 aactgaagaacaagggtcttatccttgttgctaaactcagggta 83
>gb|BM158719.1|BM158719 NXLV_039_C05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_C05 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 524
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 246 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 187
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 186 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 127
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 126 aactgaagaacaagggtcttatccttgttgctaaactcagggta 83
>gb|CF390177.1|CF390177 RTDR2_12_D12.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_12_D12_A021 5', mRNA
sequence
Length = 675
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 397 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 338
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 337 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 278
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 277 aactgaagaacaagggtcttatccttgttgctaaactcagggta 234
>gb|CF395464.1|CF395464 RTDS2_11_H06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_H06_A021 5', mRNA sequence
Length = 752
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 299 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 240
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 239 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 180
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 179 aactgaagaacaagggtcttatccttgttgctaaactcagggta 136
>gb|CO175151.1|CO175151 NDL1_48_F11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_F11_A029 5', mRNA sequence
Length = 651
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 404 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 345
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || | ||||||||| || || ||||| || || || ||||| |||||
Sbjct: 344 ccacttaacaactttaagtagccaccaccacaatcaagtttttgttcatgcttgacagaa 285
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 284 aactgaagaacaagggtcttatccttgttgctaaactcagggta 241
>gb|CO366328.1|CO366328 RTK1_27_E11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 3', mRNA sequence
Length = 767
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 351 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 410
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 411 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 470
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 471 aactgaagaacaagggtcttatccttgttgctaaactcagggta 514
>gb|DR012497.1|DR012497 HEAT1_13_E12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 3', mRNA sequence
Length = 855
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 434 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 493
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 494 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 553
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 554 aactgaagaacaagggtcttatccttgttgctaaactcagggta 597
>gb|DR682232.1|DR682232 EST1072307 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA847 3' end, mRNA sequence
Length = 725
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 442 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 383
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || |||||||||||||| || ||||| || || || ||||| |||||
Sbjct: 382 ccacttaacaactttacgtagccaccgccacaatcaagtttttgttcatgcttgacagaa 323
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || ||||||||||||||||||| |||||||||||
Sbjct: 322 aactgaagaacaggggtcttatccttgttgctaaactcagggta 279
>gb|DT630835.1|DT630835 EST1145766 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF110 3' end, mRNA sequence
Length = 828
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 450 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 391
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || |||||||||||||| || ||||| || || || ||||| |||||
Sbjct: 390 ccacttaacaactttacgtagccaccgccacaatcaagtttttgttcatgcttgacagaa 331
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || ||||||||||||||||||| |||||||||||
Sbjct: 330 aactgaagaacaggggtcttatccttgttgctaaactcagggta 287
>gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, complete cds
Length = 1593
Score = 95.6 bits (48), Expect = 4e-018
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 436 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 377
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 376 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 317
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 316 aactgaagaacaagggtcttatccttgttgctaaactcagggta 273
>gb|AW754529.1|AW754529 PC03C03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03C03, mRNA sequence
Length = 494
Score = 93.7 bits (47), Expect = 2e-017
Identities = 131/159 (82%)
Strand = Plus / Minus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 445 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 386
Query: 906 tctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgc 965
|| |||||||||| || | || || || ||||| ||||||||||| |||||||| |||
Sbjct: 385 tcaacatcaccactcaatagcttcacatatccaccaccgcagtcaagtttctgctcatgc 326
Query: 966 ttcacagagaactgcagcaccagggtcttatccttgttg 1004
|| ||||| || || || || || |||||||||||||||
Sbjct: 325 ttgacagaaaattgaagaacaagtgtcttatccttgttg 287
>gb|BF778071.1|BF778071 NXSI_081_F02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_081_F02 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 430
Score = 93.7 bits (47), Expect = 2e-017
Identities = 131/159 (82%)
Strand = Plus / Minus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 279 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 220
Query: 906 tctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgc 965
|| |||||||||| || | || || || ||||| ||||||||||| |||||||| |||
Sbjct: 219 tcaacatcaccactcaatagcttcacatatccaccaccgcagtcaagtttctgctcatgc 160
Query: 966 ttcacagagaactgcagcaccagggtcttatccttgttg 1004
|| ||||| || || || || || |||||||||||||||
Sbjct: 159 ttgacagaaaattgaagaacaagtgtcttatccttgttg 121
>gb|CF473090.1|CF473090 RTDS1_1_D04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_D04_A015 5', mRNA sequence
Length = 695
Score = 93.7 bits (47), Expect = 2e-017
Identities = 131/159 (82%)
Strand = Plus / Minus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 459 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 400
Query: 906 tctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgc 965
|| |||||||||| || | || || || ||||| ||||||||||| |||||||| |||
Sbjct: 399 tcaacatcaccactcaatagcttcacatatccaccaccgcagtcaagtttctgctcatgc 340
Query: 966 ttcacagagaactgcagcaccagggtcttatccttgttg 1004
|| ||||| || || || || || |||||||||||||||
Sbjct: 339 ttgacagaaaattgaagaacaagtgtcttatccttgttg 301
>gb|CO200932.1|CO200932 RTCNT2_2_B11.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_B11_A029 5', mRNA sequence
Length = 479
Score = 93.7 bits (47), Expect = 2e-017
Identities = 131/159 (82%)
Strand = Plus / Minus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 391 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 332
Query: 906 tctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgc 965
|| |||||||||| || | || || || ||||| ||||||||||| |||||||| |||
Sbjct: 331 tcaacatcaccactcaatagcttcacatatccaccaccgcagtcaagtttctgctcatgc 272
Query: 966 ttcacagagaactgcagcaccagggtcttatccttgttg 1004
|| ||||| || || || || || |||||||||||||||
Sbjct: 271 ttgacagaaaattgaagaacaagtgtcttatccttgttg 233
>gb|CV034720.1|CV034720 RTNACL1_11_D05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_11_D05_A029 3', mRNA sequence
Length = 677
Score = 93.7 bits (47), Expect = 2e-017
Identities = 131/159 (82%)
Strand = Plus / Plus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 249 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 308
Query: 906 tctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgc 965
|| |||||||||| || | || || || ||||| ||||||||||| |||||||| |||
Sbjct: 309 tcaacatcaccactcaatagcttcacatatccaccaccgcagtcaagtttctgctcatgc 368
Query: 966 ttcacagagaactgcagcaccagggtcttatccttgttg 1004
|| ||||| || || || || || |||||||||||||||
Sbjct: 369 ttgacagaaaattgaagaacaagtgtcttatccttgttg 407
>gb|DR092172.1|DR092172 RTAL1_27_C09.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_27_C09_A029 3', mRNA sequence
Length = 634
Score = 93.7 bits (47), Expect = 2e-017
Identities = 131/159 (82%)
Strand = Plus / Plus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 236 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 295
Query: 906 tctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgc 965
|| |||||||||| || | || || || ||||| ||||||||||| |||||||| |||
Sbjct: 296 tcaacatcaccactcaatagcttcacatatccaccaccgcagtcaagtttctgctcatgc 355
Query: 966 ttcacagagaactgcagcaccagggtcttatccttgttg 1004
|| ||||| || || || || || |||||||||||||||
Sbjct: 356 ttgacagaaaattgaagaacaagtgtcttatccttgttg 394
>gb|DR165313.1|DR165313 RTPHOS1_4_D06.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_4_D06_A029 3', mRNA sequence
Length = 681
Score = 93.7 bits (47), Expect = 2e-017
Identities = 131/159 (82%)
Strand = Plus / Plus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 274 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 333
Query: 906 tctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgc 965
|| |||||||||| || | || || || ||||| ||||||||||| |||||||| |||
Sbjct: 334 tcaacatcaccactcaatagcttcacatatccaccaccgcagtcaagtttctgctcatgc 393
Query: 966 ttcacagagaactgcagcaccagggtcttatccttgttg 1004
|| ||||| || || || || || |||||||||||||||
Sbjct: 394 ttgacagaaaattgaagaacaagtgtcttatccttgttg 432
>gb|BE662331.1|BE662331 ST84/ST84F09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST84/ST84F09, mRNA sequence
Length = 519
Score = 89.7 bits (45), Expect = 3e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 862 caaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatcaccaccca 921
|||||||||| || |||| ||| ||||||| || ||||||||||| | ||||||| |
Sbjct: 434 caaacataatactataaggtgtctctccactgaaattcttctggtcaatttcaccactta 375
Query: 922 gcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgca 981
||| || ||||||||||| || || ||||| || || || ||||| ||||| ||||| |
Sbjct: 374 acaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaaaactgaa 315
Query: 982 gcaccagggtcttatccttgttgctgaactcagggta 1018
| || |||||||||||||||||||| |||||||||||
Sbjct: 314 gaacaagggtcttatccttgttgctaaactcagggta 278
>gb|BX254774.1|BX254774 BX254774 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP104C10, mRNA sequence
Length = 672
Score = 87.7 bits (44), Expect = 1e-015
Identities = 134/164 (81%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| || |||
Sbjct: 425 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaacttca 366
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || || |||||||| || || ||||| || || || ||||| |||||
Sbjct: 365 ccacttaacaactttacatagccaccaccacaatcaagtttttgttcatgcttgacagaa 306
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || ||||| |||||||||||||| || ||||||||
Sbjct: 305 aactgaagaacaagggttttatccttgttgctaaattcagggta 262
>gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C03_A029 5', mRNA sequence
Length = 860
Score = 87.7 bits (44), Expect = 1e-015
Identities = 134/164 (81%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 233 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 174
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || | ||||||||| || || ||||| || || || ||||| |||||
Sbjct: 173 ccacttaacaactttatgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 114
Query: 975 aactgcagcaccagggtcttatccttgttgctgaactcagggta 1018
||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 113 aactgaagaacaagggtcttatccttgttgctaaactcagggta 70
>gb|AW043255.1|AW043255 ST31B10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST31B10, mRNA sequence
Length = 601
Score = 83.8 bits (42), Expect = 2e-014
Identities = 129/158 (81%)
Strand = Plus / Minus
Query: 861 ccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatcaccaccc 920
||||||||||| || |||| ||| ||||||| || ||||| ||||| | |||||||
Sbjct: 440 ccaaacataatactataaggtgtctctccactgaaattcttttggtcaatttcaccactt 381
Query: 921 agcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgc 980
| ||| || ||||||||||| || || ||||| || || || ||||| ||||| |||||
Sbjct: 380 aacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaaaactga 321
Query: 981 agcaccagggtcttatccttgttgctgaactcagggta 1018
|| || |||||||||||||||||||| |||||||||||
Sbjct: 320 agaacaagggtcttatccttgttgctaaactcagggta 283
>gb|AW587778.1|AW587778 ST66G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST66G08, mRNA sequence
Length = 460
Score = 77.8 bits (39), Expect = 1e-012
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 876 taagatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtag 935
|||| ||| ||||||| || |||||||| || | ||||||| | ||| || ||||||
Sbjct: 417 taaggtgtctctccactgaaattcttctgntcnatttcaccacnnaacaactttacgtag 358
Query: 936 ccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtctta 995
||||| || || ||||| || || || ||||| ||||| ||||| || || |||||||||
Sbjct: 357 ccaccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtctta 298
Query: 996 tccttgttgctgaactcagggta 1018
||||||||||| |||||||||||
Sbjct: 297 tccttgttgctaaactcagggta 275
>gb|BG040859.1|BG040859 NXSI_116_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_116_A03 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 427
Score = 75.8 bits (38), Expect = 4e-012
Identities = 108/132 (81%)
Strand = Plus / Minus
Query: 873 ctgtaagatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacg 932
||||||| ||| ||||||||||| |||| ||||| |||||||||| || | || ||
Sbjct: 385 ctgtaaggtgtatctccaccaaanntcttttggtcaacatcaccactcaatagcttcaca 326
Query: 933 tagccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtc 992
|| ||||| ||||||||||| |||||||| ||||| ||||| || || || || || |||
Sbjct: 325 tatccaccaccgcagtcaagtttctgctcatgcttgacagaaaattgaagaacaagtgtc 266
Query: 993 ttatccttgttg 1004
||||||||||||
Sbjct: 265 ttatccttgttg 254
>gb|AW010688.1|AW010688 ST11A05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST11A05, mRNA sequence
Length = 483
Score = 73.8 bits (37), Expect = 2e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 930 acgtagccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagg 989
||||||||||| || || ||||| || || || ||||| ||||| ||||| || || |||
Sbjct: 374 acgtagccaccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagg 315
Query: 990 gtcttatccttgttgctgaactcagggta 1018
||||||||||||||||| |||||||||||
Sbjct: 314 gtcttatccttgttgctaaactcagggta 286
>gb|AW042889.1|AW042889 ST26F06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26F06, mRNA sequence
Length = 549
Score = 73.8 bits (37), Expect = 2e-011
Identities = 129/162 (79%)
Strand = Plus / Minus
Query: 857 tggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatcacc 916
||| ||||||||||| || |||| ||| |||||| || ||||| ||||| | |||||
Sbjct: 450 tggnccaaacataatactataaggtgtctctccantgaaattcttntggtcaatttcacc 391
Query: 917 acccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagagaa 976
|| | ||| || |||||||| || || || ||||| || || || ||||| ||||| ||
Sbjct: 390 actnaacaactttacgtagccnccnccacaatcaagtttttgttcatgcttgacagaaaa 331
Query: 977 ctgcagcaccagggtcttatccttgttgctgaactcagggta 1018
|| || || |||||||||||||||||||| |||||||||||
Sbjct: 330 ntgaagaacaagggtcttatccttgttgctaaactcagggta 289
>gb|AW010325.1|AW010325 ST04G01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST04G01, mRNA sequence
Length = 775
Score = 71.9 bits (36), Expect = 6e-011
Identities = 127/158 (80%)
Strand = Plus / Minus
Query: 861 ccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatcaccaccc 920
||||||||||| || |||| ||| || |||| || ||||| ||||| | |||||||
Sbjct: 435 ccaaacataatactataaggtgtctccccactgaaattcttntggtcaatttcaccactt 376
Query: 921 agcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgc 980
| ||| || ||||||||||| || || ||||| || || || ||||| ||||| |||||
Sbjct: 375 aacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaaaactga 316
Query: 981 agcaccagggtcttatccttgttgctgaactcagggta 1018
|| || |||||||||||||| ||||| |||||||||||
Sbjct: 315 agaacaagggtcttatccttnttgctaaactcagggta 278
>gb|AW587738.1|AW587738 ST66B09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST66B09, mRNA sequence
Length = 413
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 846 ccacagatatctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctgg 905
||||| || ||||| |||||||| || ||||||| ||| ||||||||||| ||||| |||
Sbjct: 98 ccacatatgtctggaccaaacatgatactgtaaggtgtatctccaccaaacttcttttgg 39
Query: 906 tctacatcaccac 918
|| ||||||||||
Sbjct: 38 tcaacatcaccac 26
>gb|BQ700939.1|BQ700939 NXRV113_D09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV113_D09 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 370
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 930 acgtagccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagg 989
||||||||||| || || ||||| || || | ||||| ||||| ||||| || || |||
Sbjct: 350 acgtagccaccaccacaatcaagtttttgttgatgcttgacagaaaactgaagaacaagg 291
Query: 990 gtcttatccttgttgctgaactcagggta 1018
||||||||||||||||| |||||||||||
Sbjct: 290 gtcttatccttgttgctaaactcagggta 262
>gb|AW010529.1|AW010529 ST07H02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST07H02, mRNA sequence
Length = 763
Score = 61.9 bits (31), Expect = 6e-008
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 897 ttcttctggtctacatcaccacccagcaatttgacgtagccaccgccgcagtcaagcttc 956
||||||||||| | ||||||| | ||| || ||||||||||| || || ||||| ||
Sbjct: 442 ttcttctggtcaatttcaccacttaacaactttacgtagccaccaccacaatcaagtttt 383
Query: 957 tgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttgctgaactcaggg 1016
|| || ||||| ||||| ||||| || || ||||||||| |||||||| | |||||||||
Sbjct: 382 tgttcatgcttgacagaaaactgaagaacaagggtcttanccttgttgttaaactcaggg 323
Query: 1017 ta 1018
||
Sbjct: 322 ta 321
>gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clone RN06A11 similar to
CALRETICULIN, mRNA sequence
Length = 676
Score = 58.0 bits (29), Expect = 9e-007
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| || |||
Sbjct: 135 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaacttca 76
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || || |||||||| || || ||||| || || || ||||| |||||
Sbjct: 75 ccacttaacaactttacatagccaccaccacaatcaagtttttgttcatgcttgacagaa 16
Query: 975 aactg 979
|||||
Sbjct: 15 aactg 11
>gb|AW011371.1|AW011371 ST20A03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20A03, mRNA sequence
Length = 549
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 987 agggtcttatccttgttgctgaactcagggta 1018
|||||||||||||||||||| |||||||||||
Sbjct: 374 agggtcttatccttgttgctaaactcagggta 343
>gb|AW056655.1|AW056655 ST54C03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54C03, mRNA sequence
Length = 390
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 987 agggtcttatccttgttgctgaactcagggta 1018
|||||||||||||||||||| |||||||||||
Sbjct: 309 agggtcttatccttgttgctaaactcagggta 278
>gb|AW437935.1|AW437935 ST78E07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST78E07, mRNA sequence
Length = 351
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 987 agggtcttatccttgttgctgaactcagggta 1018
|||||||||||||||||||| |||||||||||
Sbjct: 309 agggtcttatccttgttgctaaactcagggta 278
>gb|BG318667.1|BG318667 NXPV_017_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_017_E12 5' similar to Arabidopsis
thaliana sequence At1g09210 putative calcium-binding
protein, calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 291
Score = 52.0 bits (26), Expect = 6e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || |||| ||| ||||||| || ||||||||||| | |||
Sbjct: 104 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtcaatttca 45
Query: 915 ccacccagcaatttgacgtagccacc 940
|||| | ||| || |||||||||||
Sbjct: 44 ccacttaacaactttacgtagccacc 19
>gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 5', mRNA sequence
Length = 797
Score = 50.1 bits (25), Expect = 2e-004
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtctacatca 914
||||||||||||||||| || || | ||| ||||||| || ||||||||||| | |||
Sbjct: 672 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtcaatttca 731
Query: 915 ccacccagcaatttgacgtagccaccgccgcagtcaagcttctgctcgtgcttcacagag 974
|||| | ||| || ||||||||||| || || ||||| || || || ||||| |||||
Sbjct: 732 ccacttaacaactttacgtagccaccaccacaatcaagtttttgttcatgcttgacagaa 791
Query: 975 aactg 979
|||||
Sbjct: 792 aactg 796
>gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 3', mRNA sequence
Length = 758
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtc 907
||||||||||||||||| || |||| ||| ||||||| || |||||||||||
Sbjct: 77 tctggtccaaacataatactataaggtgtctctccactgaaattcttctggtc 25
>gb|AW226271.1|AW226271 ST80D09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST80D09, mRNA sequence
Length = 380
Score = 44.1 bits (22), Expect = 0.014
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 987 agggtcttatccttgttgctgaactcagggta 1018
||||||||||||||| ||| |||||||||||
Sbjct: 309 agggtcttatccttgnngctaaactcagggta 278
>gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 5', mRNA sequence
Length = 755
Score = 42.1 bits (21), Expect = 0.054
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtc 907
||||||||||||||||| || || | ||| ||||||| || |||||||||||
Sbjct: 703 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtc 755
>gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 5', mRNA sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.054
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 855 tctggtccaaacataatgctgtaagatgtgtctccaccaaatttcttctggtc 907
||||||||||||||||| || || | ||| ||||||| || |||||||||||
Sbjct: 63 tctggtccaaacataatactatacggtgtctctccactgaaattcttctggtc 11
>gb|BF609920.1|BF609920 NXSI_052_E11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_052_E11 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 346
Score = 40.1 bits (20), Expect = 0.21
Identities = 56/69 (81%)
Strand = Plus / Minus
Query: 936 ccaccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtctta 995
||||| ||||||||||| |||| | ||||| ||||| || || || || || ||||||
Sbjct: 329 ccaccaccgcagtcaagtttctnnncatgcttgacagaaaattgaagaacaagtgtctta 270
Query: 996 tccttgttg 1004
|||||||||
Sbjct: 269 tccttgttg 261
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,096
Number of Sequences: 355925
Number of extensions: 133096
Number of successful extensions: 39967
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39903
Number of HSP's gapped (non-prelim): 52
length of query: 1238
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1219
effective length of database: 210,514,662
effective search space: 256617372978
effective search space used: 256617372978
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)