BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF399849.1|CF399849 RTWW1_1_D05.g1_A015 Well-watered lob... 105 4e-021
gb|CX649825.1|CX649825 COLD1_41_E09.g1_A029 Root cold Pinus... 105 4e-021
gb|DR022316.1|DR022316 STRS1_50_F11.b1_A034 Shoot tip pitch... 105 4e-021
gb|DR022608.1|DR022608 STRS1_52_E11.b1_A034 Shoot tip pitch... 105 4e-021
gb|DR059216.1|DR059216 RTNIT1_16_A01.g1_A029 Roots minus ni... 105 4e-021
gb|DR683828.1|DR683828 EST1073904 Normalized pine embryo li... 105 4e-021
gb|BF609050.1|BF609050 NXSI_039_G11_F NXSI (Nsf Xylem Side ... 82 6e-014
gb|BM134211.1|BM134211 NXLV_018_B02_F NXLV (Nsf Xylem Late ... 82 6e-014
gb|CF472832.1|CF472832 RTDS1_12_A05.b1_A015 Drought-stresse... 82 6e-014
gb|CF472877.1|CF472877 RTDS1_12_A06.b1_A015 Drought-stresse... 82 6e-014
gb|DR049704.1|DR049704 RTBOR1_18_B06.g1_A029 Roots plus add... 76 4e-012
gb|CF475415.1|CF475415 RTWW2_12_A06.b1_A021 Well-watered lo... 72 6e-011
gb|CF399777.1|CF399777 RTWW1_1_D05.b1_A015 Well-watered lob... 66 4e-009
gb|CF395791.1|CF395791 RTDS2_17_D04.g1_A021 Drought-stresse... 62 6e-008
gb|CF475000.1|CF475000 RTWW2_5_G11.b1_A021 Well-watered lob... 62 6e-008
gb|CF475079.1|CF475079 RTWW2_5_G11.g1_A021 Well-watered lob... 62 6e-008
gb|CF475540.1|CF475540 RTWW2_12_A06.g1_A021 Well-watered lo... 62 6e-008
gb|CX649743.1|CX649743 COLD1_41_E09.b1_A029 Root cold Pinus... 62 6e-008
gb|DT638624.1|DT638624 EST1153555 Normalized pine embryo li... 62 6e-008
gb|DR688361.1|DR688361 EST1078445 Normalized pine embryo li... 58 9e-007
gb|DT634670.1|DT634670 EST1149601 Normalized pine embryo li... 58 9e-007
gb|BX784112.1|BX784112 BX784112 Pinus pinaster differenciat... 56 4e-006
gb|DR694395.1|DR694395 EST1084487 Normalized pine embryo li... 54 1e-005
>gb|CF399849.1|CF399849 RTWW1_1_D05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_1_D05_A015 5', mRNA sequence
Length = 685
Score = 105 bits (53), Expect = 4e-021
Identities = 173/213 (81%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 558 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 499
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatg 671
||||| |||||| ||||||||| || ||||| ||||||||||||| ||| | ||
Sbjct: 498 ttccaatcctttccagtccattcataaatttcaacggagtattccaggtgatcagtgatt 439
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
|| ||||| | |||||| ||||||||||| || | |||| |||||| |||||||||
Sbjct: 438 cgatacatagcaggttcaaaagtctccccaactttacgatgctgaacatttacagcctta 379
Query: 732 aggtgccccctctcatggaagacccatttgctt 764
|| || ||||| |||||||| ||||| ||||||
Sbjct: 378 agatgacccctttcatggaaaacccacttgctt 346
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 262 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 204
>gb|CX649825.1|CX649825 COLD1_41_E09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_E09_A029 5', mRNA sequence
Length = 817
Score = 105 bits (53), Expect = 4e-021
Identities = 173/213 (81%)
Strand = Plus / Plus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 600 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 659
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatg 671
||||| |||||| ||||||||| || ||||| ||||||||||||| ||| | ||
Sbjct: 660 ttccaatcctttccagtccattcataaatttcaacggagtattccaggtgatcagtgatt 719
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
|| ||||| | |||||| ||||||||||| || | |||| |||||| |||||||||
Sbjct: 720 cgatacatagcaggttcaaaagtctccccaactttacgatgctgaacatttacagcctta 779
Query: 732 aggtgccccctctcatggaagacccatttgctt 764
|| || ||||| |||||||| ||||| ||||||
Sbjct: 780 agatgacccctttcatggaaaacccacttgctt 812
>gb|DR022316.1|DR022316 STRS1_50_F11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_50_F11_A034 3', mRNA sequence
Length = 792
Score = 105 bits (53), Expect = 4e-021
Identities = 173/213 (81%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 276 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 217
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatg 671
||||| |||||| ||||||||| || ||||| ||||||||||||| ||| | ||
Sbjct: 216 ttccaatcctttccagtccattcataaatttcaacggagtattccaggtgatcagtgatt 157
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
|| ||||| | |||||| ||||||||||| || | |||| |||||| |||||||||
Sbjct: 156 cgatacatagcaggttcaaaagtctccccaactttacgatgctgaacatttacagcctta 97
Query: 732 aggtgccccctctcatggaagacccatttgctt 764
|| || ||||| |||||||| ||||| ||||||
Sbjct: 96 agatgacccctttcatggaaaacccacttgctt 64
>gb|DR022608.1|DR022608 STRS1_52_E11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_E11_A034 3', mRNA sequence
Length = 826
Score = 105 bits (53), Expect = 4e-021
Identities = 173/213 (81%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 310 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 251
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatg 671
||||| |||||| ||||||||| || ||||| ||||||||||||| ||| | ||
Sbjct: 250 ttccaatcctttccagtccattcataaatttcaacggagtattccaggtgatcagtgatt 191
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
|| ||||| | |||||| ||||||||||| || | |||| |||||| |||||||||
Sbjct: 190 cgatacatagcaggttcaaaagtctccccaactttacgatgctgaacatttacagcctta 131
Query: 732 aggtgccccctctcatggaagacccatttgctt 764
|| || ||||| |||||||| ||||| ||||||
Sbjct: 130 agatgacccctttcatggaaaacccacttgctt 98
>gb|DR059216.1|DR059216 RTNIT1_16_A01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_A01_A029 5', mRNA sequence
Length = 618
Score = 105 bits (53), Expect = 4e-021
Identities = 173/213 (81%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 402 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 343
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatg 671
||||| |||||| ||||||||| || ||||| ||||||||||||| ||| | ||
Sbjct: 342 ttccaatcctttccagtccattcataaatttcaacggagtattccaggtgatcagtgatt 283
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
|| ||||| | |||||| ||||||||||| || | |||| |||||| |||||||||
Sbjct: 282 cgatacatagcaggttcaaaagtctccccaactttacgatgctgaacatttacagcctta 223
Query: 732 aggtgccccctctcatggaagacccatttgctt 764
|| || ||||| |||||||| ||||| ||||||
Sbjct: 222 agatgacccctttcatggaaaacccacttgctt 190
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 106 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 48
>gb|DR683828.1|DR683828 EST1073904 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL74 3' end, mRNA sequence
Length = 864
Score = 105 bits (53), Expect = 4e-021
Identities = 173/213 (81%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 688 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 629
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatg 671
||||| |||||| ||||||||| || ||||| ||||||||||||| ||| | ||
Sbjct: 628 ttccaatcctttccagtccattcataaatttcaacggagtattccaggtgatcagtgatt 569
Query: 672 cggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaacagcctta 731
|| ||||| | |||||| ||||||||||| || | |||| |||||| |||||||||
Sbjct: 568 cgatacatagcaggttcaaaagtctccccaactttacgatgctgaacatttacagcctta 509
Query: 732 aggtgccccctctcatggaagacccatttgctt 764
|| || ||||| |||||||| ||||| ||||||
Sbjct: 508 agatgacccctttcatggaaaacccacttgctt 476
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 392 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 334
>gb|BF609050.1|BF609050 NXSI_039_G11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_039_G11 5' similar to Arabidopsis thaliana
sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 384
Score = 81.8 bits (41), Expect = 6e-014
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 166 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 107
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggt 660
||||| |||||| ||||||||| || ||||| |||||||||||||
Sbjct: 106 ttccaatcctttccagtccattcataaatttcaacggagtattccaggt 58
>gb|BM134211.1|BM134211 NXLV_018_B02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_018_B02 5' similar to Arabidopsis thaliana
sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 609
Score = 81.8 bits (41), Expect = 6e-014
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 133 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 74
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggt 660
||||| |||||| ||||||||| || ||||| |||||||||||||
Sbjct: 73 ttccaatcctttccagtccattcataaatttcaacggagtattccaggt 25
>gb|CF472832.1|CF472832 RTDS1_12_A05.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_A05_A015 3', mRNA sequence
Length = 629
Score = 81.8 bits (41), Expect = 6e-014
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 122 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 63
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggt 660
||||| |||||| ||||||||| || ||||| |||||||||||||
Sbjct: 62 ttccaatcctttccagtccattcataaatttcaacggagtattccaggt 14
>gb|CF472877.1|CF472877 RTDS1_12_A06.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_A06_A015 3', mRNA sequence
Length = 632
Score = 81.8 bits (41), Expect = 6e-014
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 126 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 67
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattccaggt 660
||||| |||||| ||||||||| || ||||| |||||||||||||
Sbjct: 66 ttccaatcctttccagtccattcataaatttcaacggagtattccaggt 18
>gb|DR049704.1|DR049704 RTBOR1_18_B06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_B06_A029 5', mRNA sequence
Length = 728
Score = 75.8 bits (38), Expect = 4e-012
Identities = 158/198 (79%)
Strand = Plus / Minus
Query: 567 ctcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcca 626
||||||||| ||||||| | |||||| ||||| |||| || |||||||| |||||
Sbjct: 728 ctcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggcttccaatcctttcca 669
Query: 627 gaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctggt 686
| ||||||||| || ||||| ||||||||||||| ||| | || || ||||| | |||
Sbjct: 668 gtccattcataaatttcaacggagtattccaggtgatcagtgattcgatacatagcaggt 609
Query: 687 tcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctca 746
||| ||||||||||| || | |||| |||||| ||||||||||| || ||||| |||
Sbjct: 608 tcaaaagtctccccaactttacgatgctgaacatttacagccttaagatgacccctttca 549
Query: 747 tggaagacccatttgctt 764
||||| ||||| ||||||
Sbjct: 548 tggaaaacccacttgctt 531
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 447 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 389
>gb|CF475415.1|CF475415 RTWW2_12_A06.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_A06_A021 3', mRNA sequence
Length = 679
Score = 71.9 bits (36), Expect = 6e-011
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 104 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 45
Query: 612 ttccagcttgttccagaccattcatagatctcaacagagtattc 655
||||| |||||| ||||||||| || ||||| ||||||||
Sbjct: 44 ttccaatcctttccagtccattcataaatttcaacggagtattc 1
>gb|CF399777.1|CF399777 RTWW1_1_D05.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_1_D05_A015 3', mRNA sequence
Length = 677
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggc 611
|||||||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||
Sbjct: 96 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatctgcaatgtaaggc 37
Query: 612 ttcca 616
|||||
Sbjct: 36 ttcca 32
>gb|CF395791.1|CF395791 RTDS2_17_D04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_D04_A021 5', mRNA sequence
Length = 757
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 664 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 606
>gb|CF475000.1|CF475000 RTWW2_5_G11.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_G11_A021 3', mRNA sequence
Length = 617
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactggagttgcacatcatc 598
|||||||||||||||||||||||| ||||||| | |||||| |||||
Sbjct: 49 ttcagaacataaggactcatcatgtaaaactgcacttgcacgtcatc 3
>gb|CF475079.1|CF475079 RTWW2_5_G11.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_G11_A021 5', mRNA sequence
Length = 783
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 712 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 654
>gb|CF475540.1|CF475540 RTWW2_12_A06.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_A06_A021 5', mRNA sequence
Length = 752
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 648 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 590
>gb|CX649743.1|CX649743 COLD1_41_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_E09_A029 3', mRNA sequence
Length = 805
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 1 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 59
>gb|DT638624.1|DT638624 EST1153555 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH42 3' end, mRNA sequence
Length = 860
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||||
Sbjct: 809 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctgca 751
>gb|DR688361.1|DR688361 EST1078445 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC538 3' end, mRNA sequence
Length = 797
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctg 904
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||
Sbjct: 613 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctg 557
>gb|DT634670.1|DT634670 EST1149601 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG854 3' end, mRNA sequence
Length = 811
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctg 904
||||||||| | |||||| |||||||| | || |||||||||||||||||||||||
Sbjct: 781 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcctg 725
>gb|BX784112.1|BX784112 BX784112 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129C08, mRNA sequence
Length = 631
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 552 ttcagaacataaggactcatcatgaaaaactg 583
|||||||||||||||||||||||| |||||||
Sbjct: 34 ttcagaacataaggactcatcatgtaaaactg 3
>gb|DR694395.1|DR694395 EST1084487 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEB89 3' end, mRNA sequence
Length = 850
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 848 gttgctaaaaagatcaagtgatccagatagcagcacccgagcattatttcttgcctgca 906
||||||||| | |||||| |||||||| | || |||||||||||||||||||| ||||
Sbjct: 799 gttgctaaataaatcaagggatccagaaataagaacccgagcattatttcttgcgtgca 741
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,091
Number of Sequences: 355925
Number of extensions: 131091
Number of successful extensions: 30524
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30459
Number of HSP's gapped (non-prelim): 55
length of query: 1263
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1244
effective length of database: 210,514,662
effective search space: 261880239528
effective search space used: 261880239528
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)