BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.458
         (708 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR385336.1|DR385336  RTHG1_8_C03.b1_A029 Roots plus added...    52   3e-005
gb|DR385418.1|DR385418  RTHG1_8_C03.g1_A029 Roots plus added...    52   3e-005

>gb|DR385336.1|DR385336 RTHG1_8_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
           RTHG1_8_C03_A029 3', mRNA sequence
          Length = 687

 Score = 52.0 bits (26), Expect = 3e-005
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 310 atctggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttca 367
           ||||||||||||||  |||| || || |||||||| || || ||||||||||||||||
Sbjct: 154 atctggggcaaggttacccgacctcacggcaactctggtgttgtccgcgccaagttca 211



>gb|DR385418.1|DR385418 RTHG1_8_C03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
           RTHG1_8_C03_A029 5', mRNA sequence
          Length = 692

 Score = 52.0 bits (26), Expect = 3e-005
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 310 atctggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttca 367
           ||||||||||||||  |||| || || |||||||| || || ||||||||||||||||
Sbjct: 131 atctggggcaaggttacccgacctcacggcaactctggtgttgtccgcgccaagttca 188



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,082
Number of Sequences: 355925
Number of extensions: 75082
Number of successful extensions: 26198
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26196
Number of HSP's gapped (non-prelim): 2
length of query: 708
length of database: 217,277,237
effective HSP length: 19
effective length of query: 689
effective length of database: 210,514,662
effective search space: 145044602118
effective search space used: 145044602118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)