BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.451
(1101 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF664710.1|CF664710 RTCNT1_11_B05.g1_A029 Root control P... 174 5e-042
gb|CV032940.1|CV032940 RTNACL1_19_F02.b1_A029 Roots plus ad... 174 5e-042
gb|DR386820.1|DR386820 RTHG1_17_D08.g1_A029 Roots plus adde... 174 5e-042
gb|CR392305.1|CR392305 CR392305 RN Pinus pinaster cDNA clon... 167 1e-039
gb|CF388385.1|CF388385 RTDR2_2_C07.g1_A021 Loblolly pine ro... 159 3e-037
gb|CF394667.1|CF394667 RTDS2_6_B01.g1_A021 Drought-stressed... 159 3e-037
gb|CF394668.1|CF394668 RTDS2_6_C10.g1_A021 Drought-stressed... 159 3e-037
gb|CF396038.1|CF396038 RTDS2_20_D07.g1_A021 Drought-stresse... 159 3e-037
gb|CF396150.1|CF396150 RTDS2_13_D08.g1_A021 Drought-stresse... 159 3e-037
gb|CF397303.1|CF397303 RTDS3_2_B11.g1_A022 Drought-stressed... 159 3e-037
gb|CF398664.1|CF398664 RTDS3_13_A05.b1_A022 Drought-stresse... 159 3e-037
gb|CF668582.1|CF668582 RTCNT1_37_H12.b1_A029 Root control P... 159 3e-037
gb|CF671915.1|CF671915 RTCNT1_60_D05.b1_A029 Root control P... 159 3e-037
gb|CF672417.1|CF672417 RTCNT1_63_H12.b1_A029 Root control P... 159 3e-037
gb|CO173990.1|CO173990 NDL1_41_A11.b1_A029 Needles control ... 159 3e-037
gb|CO363453.1|CO363453 RTK1_9_G06.g1_A029 Roots minus potas... 159 3e-037
gb|CO365008.1|CO365008 RTK1_23_C11.b1_A029 Roots minus pota... 159 3e-037
gb|CO368169.1|CO368169 RTK1_39_B08.b1_A029 Roots minus pota... 159 3e-037
gb|CV033617.1|CV033617 RTNACL1_35_D01.g1_A029 Roots plus ad... 159 3e-037
gb|DR058365.1|DR058365 RTNIT1_11_H04.b1_A029 Roots minus ni... 159 3e-037
gb|DR070168.1|DR070168 RTDK1_11_E06.g1_A029 Roots, dark Pin... 159 3e-037
gb|DR080554.1|DR080554 RTFEPL1_23_B11.g1_A029 Roots plus ad... 159 3e-037
gb|DR090083.1|DR090083 RTAL1_12_D01.g1_A029 Roots plus adde... 159 3e-037
gb|DR096936.1|DR096936 STRR1_31_H07.b1_A033 Stem Response R... 159 3e-037
gb|DR177591.1|DR177591 RTMNUT1_6_E10.b1_A029 Roots minus mi... 159 3e-037
gb|DR181672.1|DR181672 RTMNUT1_40_G03.b2_A029 Roots minus m... 159 3e-037
gb|DR746095.1|DR746095 RTCU1_34_E04.g1_A029 Roots plus adde... 157 1e-036
gb|CO201821.1|CO201821 RTCNT2_8_H06.b1_A029 Root control 2 ... 151 7e-035
gb|DR020759.1|DR020759 STRS1_39_D02.b1_A034 Shoot tip pitch... 151 7e-035
gb|CF478064.1|CF478064 RTWW3_17_H09.g1_A022 Well-watered lo... 145 4e-033
gb|CO365286.1|CO365286 RTK1_24_F08.g1_A029 Roots minus pota... 137 1e-030
gb|DR080489.1|DR080489 RTFEPL1_23_B11.b1_A029 Roots plus ad... 137 1e-030
gb|CO368249.1|CO368249 RTK1_39_B08.g1_A029 Roots minus pota... 131 7e-029
gb|DR059787.1|DR059787 RTNIT1_19_F08.g1_A029 Roots minus ni... 131 7e-029
gb|AW010954.1|AW010954 ST13G09 Pine TriplEx shoot tip libra... 117 1e-024
gb|AW011056.1|AW011056 ST16B09 Pine TriplEx shoot tip libra... 117 1e-024
gb|AW981917.1|AW981917 PC20D01 Pine TriplEx pollen cone lib... 117 1e-024
gb|CO164323.1|CO164323 FLD1_47_F06.b1_A029 Root flooded Pin... 117 1e-024
gb|CF391874.1|CF391874 RTDR3_10_E03.g1_A022 Loblolly pine r... 105 4e-021
gb|CO364668.1|CO364668 RTK1_21_C06.b1_A029 Roots minus pota... 103 2e-020
gb|CV033022.1|CV033022 RTNACL1_19_F02.g1_A029 Roots plus ad... 101 6e-020
gb|DN614362.1|DN614362 EST967412 Subtracted pine embryo lib... 100 2e-019
gb|DR056148.1|DR056148 RTCA1_28_H07.b1_A029 Roots minus cal... 100 2e-019
gb|DT629241.1|DT629241 EST1155811 Subtracted pine embryo li... 100 2e-019
gb|CO164397.1|CO164397 FLD1_47_F06.g1_A029 Root flooded Pin... 98 9e-019
gb|DR691463.1|DR691463 EST1081550 Normalized pine embryo li... 98 9e-019
gb|DR695049.1|DR695049 EST1085142 Normalized pine embryo li... 98 9e-019
gb|DT639071.1|DT639071 EST1154002 Normalized pine embryo li... 98 9e-019
gb|CX649114.1|CX649114 COLD1_33_C09.b1_A029 Root cold Pinus... 96 4e-018
gb|DR685341.1|DR685341 EST1075418 Normalized pine embryo li... 96 4e-018
gb|DR691688.1|DR691688 EST1081775 Normalized pine embryo li... 96 4e-018
gb|CF667117.1|CF667117 RTCNT1_28_F11.b1_A029 Root control P... 94 1e-017
gb|CF672485.1|CF672485 RTCNT1_63_H12.g1_A029 Root control P... 94 1e-017
gb|CO175788.1|CO175788 NDL1_57_B07.b1_A029 Needles control ... 94 1e-017
gb|CO201617.1|CO201617 RTCNT2_7_A11.b1_A029 Root control 2 ... 94 1e-017
gb|CV033532.1|CV033532 RTNACL1_35_D01.b1_A029 Roots plus ad... 94 1e-017
gb|CX649196.1|CX649196 COLD1_33_C09.g1_A029 Root cold Pinus... 94 1e-017
gb|DR070084.1|DR070084 RTDK1_11_E06.b1_A029 Roots, dark Pin... 94 1e-017
gb|DR179583.1|DR179583 RTMNUT1_23_C04.b2_A029 Roots minus m... 94 1e-017
gb|BG040907.1|BG040907 NXSI_116_E07_F NXSI (Nsf Xylem Side ... 92 6e-017
gb|CV031921.1|CV031921 RTNACL1_4_D01.g1_A029 Roots plus add... 90 2e-016
gb|DR181756.1|DR181756 RTMNUT1_40_G03.g2_A029 Roots minus m... 80 2e-013
gb|CF478868.1|CF478868 RTWW3_15_F09.g1_A022 Well-watered lo... 78 9e-013
gb|CO157688.1|CO157688 FLD1_1_H09.b1_A029 Root flooded Pinu... 78 9e-013
gb|CO174060.1|CO174060 NDL1_41_A11.g1_A029 Needles control ... 78 9e-013
gb|CO201906.1|CO201906 RTCNT2_8_H06.g1_A029 Root control 2 ... 78 9e-013
gb|DR112658.1|DR112658 RTS1_29_D10.g1_A029 Roots minus sulf... 78 9e-013
gb|CF396620.1|CF396620 RTDS2_23_B05.b1_A021 Drought-stresse... 72 5e-011
gb|BE761859.1|BE761859 NXCI_070_F09_F NXCI (Nsf Xylem Compr... 60 2e-007
gb|CD017706.1|CD017706 NXCI_114_B05_F NXCI (Nsf Xylem Compr... 52 5e-005
gb|AW011175.1|AW011175 ST17F04 Pine TriplEx shoot tip libra... 50 2e-004
gb|CF388246.1|CF388246 RTDR2_2_C07.b1_A021 Loblolly pine ro... 50 2e-004
gb|CF394526.1|CF394526 RTDS2_6_C10.b1_A021 Drought-stressed... 50 2e-004
gb|CF396954.1|CF396954 RTDS2_25_F10.b1_A021 Drought-stresse... 50 2e-004
gb|CF398695.1|CF398695 RTDS3_13_A05.g1_A022 Drought-stresse... 50 2e-004
gb|CF476571.1|CF476571 RTWW3_2_E08.b1_A022 Well-watered lob... 50 2e-004
gb|CF477941.1|CF477941 RTWW3_17_H09.b1_A022 Well-watered lo... 50 2e-004
gb|CF664626.1|CF664626 RTCNT1_11_B05.b1_A029 Root control P... 50 2e-004
gb|DR022539.1|DR022539 STRS1_51_F12.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR078263.1|DR078263 RTFEPL1_3_A10.b1_A029 Roots plus add... 50 2e-004
gb|DR097017.1|DR097017 STRR1_31_H07.g1_A033 Stem Response R... 50 2e-004
gb|BE662582.1|BE662582 ST88/ST88B10 Pine TriplEx shoot tip ... 44 0.012
gb|DR096828.1|DR096828 STRR1_30_D04.g1_A033 Stem Response R... 44 0.012
gb|DR694398.1|DR694398 EST1084490 Normalized pine embryo li... 44 0.012
gb|DR070491.1|DR070491 RTDK1_13_E02.g1_A029 Roots, dark Pin... 42 0.048
gb|DR078338.1|DR078338 RTFEPL1_3_A10.g1_A029 Roots plus add... 42 0.048
gb|DR744274.1|DR744274 RTCU1_21_H04.b1_A029 Roots plus adde... 42 0.048
gb|DR746022.1|DR746022 RTCU1_34_E04.b1_A029 Roots plus adde... 42 0.048
>gb|CF664710.1|CF664710 RTCNT1_11_B05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_B05_A029 5', mRNA sequence
Length = 725
Score = 174 bits (88), Expect = 5e-042
Identities = 388/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 51 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 110
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| |||||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 111 gatcagaaactgcgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 170
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 171 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 230
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 231 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 290
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 291 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 350
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 351 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 410
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || |||||||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 411 aatgatcttccgggtctgacggacactgaaaaaccaaggatgcggggacctaaaagggca 470
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 471 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 530
Query: 575 acataccg 582
||||||||
Sbjct: 531 acataccg 538
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 595 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 654
Query: 699 g 699
|
Sbjct: 655 g 655
>gb|CV032940.1|CV032940 RTNACL1_19_F02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_F02_A029 3', mRNA sequence
Length = 701
Score = 174 bits (88), Expect = 5e-042
Identities = 388/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 656 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 597
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| |||||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 596 gatcagaaactgcgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 537
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 536 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 477
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 476 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 417
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 416 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 357
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 356 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 297
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || |||||||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 296 aatgatcttccgggtctgacggacactgaaaaaccaaggatgcggggacctaaaagggca 237
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 236 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 177
Query: 575 acataccg 582
||||||||
Sbjct: 176 acataccg 169
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 112 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 53
Query: 699 g 699
|
Sbjct: 52 g 52
>gb|DR386820.1|DR386820 RTHG1_17_D08.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_D08_A029 5', mRNA sequence
Length = 705
Score = 174 bits (88), Expect = 5e-042
Identities = 388/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 32 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 91
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| |||||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 92 gatcagaaactgcgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 151
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 152 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 211
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 212 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 271
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 272 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 331
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 332 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 391
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || |||||||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 392 aatgatcttccgggtctgacggacactgaaaaaccaaggatgcggggacctaaaagggca 451
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 452 tccaaaatcagaaaactgttcaatcttcccaaagaggatgatgttaggaaatatgtcaac 511
Query: 575 acataccg 582
||||||||
Sbjct: 512 acataccg 519
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 576 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 635
Query: 699 g 699
|
Sbjct: 636 g 636
>gb|CR392305.1|CR392305 CR392305 RN Pinus pinaster cDNA clone RN30G02, mRNA sequence
Length = 619
Score = 167 bits (84), Expect = 1e-039
Identities = 387/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| |||||||| || ||||||||
Sbjct: 38 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctagagatcgatgat 97
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| |||||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 98 gatcagaaactgcgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 157
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 158 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 217
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 218 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 277
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 278 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 337
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 338 ggatgcattgttagccccgatctttctgtcttgaacctggtcattgttaagaagggagaa 397
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || |||||||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 398 aatgatcttccgggtctgacggacactgaaaaaccaaggatgcggggacctaaaagggca 457
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 458 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 517
Query: 575 acataccg 582
||||||||
Sbjct: 518 acataccg 525
>gb|CF388385.1|CF388385 RTDR2_2_C07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_2_C07_A021 5', mRNA
sequence
Length = 732
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 63 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 122
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 123 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 182
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 183 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 242
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 243 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 302
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 303 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 362
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 363 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 422
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 423 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 482
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 483 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 542
Query: 575 acataccg 582
||||||||
Sbjct: 543 acataccg 550
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 607 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 666
Query: 699 g 699
|
Sbjct: 667 g 667
>gb|CF394667.1|CF394667 RTDS2_6_B01.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_6_B01_A021 5', mRNA sequence
Length = 665
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 55 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 114
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 115 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 174
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 175 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 234
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 235 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 294
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 295 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 354
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 355 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 414
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 415 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 474
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 475 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 534
Query: 575 acataccg 582
||||||||
Sbjct: 535 acataccg 542
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 599 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 658
Query: 699 g 699
|
Sbjct: 659 g 659
>gb|CF394668.1|CF394668 RTDS2_6_C10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_6_C10_A021 5', mRNA sequence
Length = 704
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 49 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 108
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 109 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 168
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 169 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 228
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 229 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 288
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 289 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 348
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 349 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 408
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 409 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 468
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 469 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 528
Query: 575 acataccg 582
||||||||
Sbjct: 529 acataccg 536
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 593 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 652
Query: 699 g 699
|
Sbjct: 653 g 653
>gb|CF396038.1|CF396038 RTDS2_20_D07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_D07_A021 5', mRNA sequence
Length = 610
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 47 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 106
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 107 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 166
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 167 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 226
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 227 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 286
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 287 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 346
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 347 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 406
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 407 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 466
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 467 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 526
Query: 575 acataccg 582
||||||||
Sbjct: 527 acataccg 534
>gb|CF396150.1|CF396150 RTDS2_13_D08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_13_D08_A021 5', mRNA sequence
Length = 793
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 45 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 104
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 105 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 164
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 165 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 224
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 225 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 284
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 285 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 344
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 345 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 404
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 405 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 464
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 465 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 524
Query: 575 acataccg 582
||||||||
Sbjct: 525 acataccg 532
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 589 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 648
Query: 699 g 699
|
Sbjct: 649 g 649
>gb|CF397303.1|CF397303 RTDS3_2_B11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_B11_A022 5', mRNA sequence
Length = 736
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 18 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 77
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 78 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 137
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 138 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 197
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 198 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 257
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 258 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 317
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 318 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 377
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 378 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 437
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 438 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 497
Query: 575 acataccg 582
||||||||
Sbjct: 498 acataccg 505
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 562 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 621
Query: 699 g 699
|
Sbjct: 622 g 622
>gb|CF398664.1|CF398664 RTDS3_13_A05.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_13_A05_A022 3', mRNA sequence
Length = 678
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 595 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 536
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 535 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 476
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 475 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 416
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 415 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 356
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 355 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 296
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 295 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 236
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 235 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 176
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 175 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 116
Query: 575 acataccg 582
||||||||
Sbjct: 115 acataccg 108
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaat 681
||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 51 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaat 9
>gb|CF668582.1|CF668582 RTCNT1_37_H12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_H12_A029 3', mRNA sequence
Length = 710
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 653 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 594
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 593 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 534
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 533 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 474
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 473 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 414
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 413 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 354
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 353 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 294
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 293 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 234
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 233 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 174
Query: 575 acataccg 582
||||||||
Sbjct: 173 acataccg 166
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 109 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 50
Query: 699 g 699
|
Sbjct: 49 g 49
>gb|CF671915.1|CF671915 RTCNT1_60_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_D05_A029 3', mRNA sequence
Length = 728
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 678 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 619
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 618 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 559
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 558 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 499
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 498 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 439
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 438 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 379
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 378 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 319
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 318 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 259
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 258 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 199
Query: 575 acataccg 582
||||||||
Sbjct: 198 acataccg 191
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 134 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 75
Query: 699 g 699
|
Sbjct: 74 g 74
>gb|CF672417.1|CF672417 RTCNT1_63_H12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_63_H12_A029 3', mRNA sequence
Length = 705
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 655 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 596
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 595 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 536
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 535 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 476
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 475 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 416
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 415 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 356
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 355 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 296
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 295 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 236
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 235 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 176
Query: 575 acataccg 582
||||||||
Sbjct: 175 acataccg 168
Score = 58.0 bits (29), Expect = 8e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || |||||||| ||||
Sbjct: 111 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgccgacaagaaaaaga 52
Query: 699 g 699
|
Sbjct: 51 g 51
>gb|CO173990.1|CO173990 NDL1_41_A11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_A11_A029 3', mRNA sequence
Length = 804
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 743 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 684
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 683 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 624
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 623 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 564
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 563 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 504
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 503 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 444
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 443 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 384
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 383 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 324
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 323 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 264
Query: 575 acataccg 582
||||||||
Sbjct: 263 acataccg 256
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 199 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 140
Query: 699 g 699
|
Sbjct: 139 g 139
>gb|CO363453.1|CO363453 RTK1_9_G06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_9_G06_A029 5', mRNA sequence
Length = 856
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 55 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 114
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 115 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 174
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 175 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 234
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 235 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 294
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 295 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 354
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 355 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 414
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 415 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 474
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 475 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 534
Query: 575 acataccg 582
||||||||
Sbjct: 535 acataccg 542
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 599 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 658
Query: 699 g 699
|
Sbjct: 659 g 659
>gb|CO365008.1|CO365008 RTK1_23_C11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_C11_A029 3', mRNA sequence
Length = 908
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 856 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 797
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 796 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 737
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 736 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 677
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 676 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 617
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 616 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 557
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 556 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 497
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 496 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 437
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 436 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 377
Query: 575 acataccg 582
||||||||
Sbjct: 376 acataccg 369
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 312 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 253
Query: 699 g 699
|
Sbjct: 252 g 252
>gb|CO368169.1|CO368169 RTK1_39_B08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_B08_A029 3', mRNA sequence
Length = 734
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 688 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 629
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 628 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 569
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 568 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 509
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 508 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 449
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 448 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 389
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 388 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 329
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 328 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 269
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 268 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 209
Query: 575 acataccg 582
||||||||
Sbjct: 208 acataccg 201
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 144 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 85
Query: 699 g 699
|
Sbjct: 84 g 84
>gb|CV033617.1|CV033617 RTNACL1_35_D01.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_D01_A029 5', mRNA sequence
Length = 726
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 62 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 121
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 122 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 181
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 182 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 241
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 242 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 301
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 302 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 361
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 362 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 421
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 422 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 481
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 482 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 541
Query: 575 acataccg 582
||||||||
Sbjct: 542 acataccg 549
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 606 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 665
Query: 699 g 699
|
Sbjct: 666 g 666
>gb|DR058365.1|DR058365 RTNIT1_11_H04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_H04_A029 3', mRNA sequence
Length = 600
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 553 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 494
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 493 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 434
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 433 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 374
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 373 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 314
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 313 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 254
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 253 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 194
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 193 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 134
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 133 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 74
Query: 575 acataccg 582
||||||||
Sbjct: 73 acataccg 66
>gb|DR070168.1|DR070168 RTDK1_11_E06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_E06_A029 5', mRNA sequence
Length = 630
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 27 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 86
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 87 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 146
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 147 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 206
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 207 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 266
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 267 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 326
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 327 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 386
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 387 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 446
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 447 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 506
Query: 575 acataccg 582
||||||||
Sbjct: 507 acataccg 514
Score = 48.1 bits (24), Expect = 8e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 571 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 630
>gb|DR080554.1|DR080554 RTFEPL1_23_B11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_23_B11_A029 5', mRNA sequence
Length = 902
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 49 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 108
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 109 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 168
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 169 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 228
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 229 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 288
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 289 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 348
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 349 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 408
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 409 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 468
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 469 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 528
Query: 575 acataccg 582
||||||||
Sbjct: 529 acataccg 536
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 593 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 652
Query: 699 g 699
|
Sbjct: 653 g 653
>gb|DR090083.1|DR090083 RTAL1_12_D01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_D01_A029 5', mRNA sequence
Length = 617
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 51 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 110
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 111 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 170
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 171 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 230
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 231 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 290
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 291 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 350
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 351 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 410
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 411 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 470
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 471 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 530
Query: 575 acataccg 582
||||||||
Sbjct: 531 acataccg 538
>gb|DR096936.1|DR096936 STRR1_31_H07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_H07_A033 3', mRNA sequence
Length = 740
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 679 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 620
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 619 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 560
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 559 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 500
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 499 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 440
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 439 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 380
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 379 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 320
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 319 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 260
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 259 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 200
Query: 575 acataccg 582
||||||||
Sbjct: 199 acataccg 192
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 135 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 76
Query: 699 g 699
|
Sbjct: 75 g 75
>gb|DR177591.1|DR177591 RTMNUT1_6_E10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_6_E10_A029 3', mRNA sequence
Length = 735
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 678 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 619
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 618 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 559
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 558 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 499
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 498 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 439
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 438 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 379
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 378 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 319
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 318 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 259
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 258 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 199
Query: 575 acataccg 582
||||||||
Sbjct: 198 acataccg 191
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 641 cttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaagag 699
||||| ||||| ||||| || || ||||||||||||||||| || || ||||| |||||
Sbjct: 132 cttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaagag 74
>gb|DR181672.1|DR181672 RTMNUT1_40_G03.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_40_G03_A029 3', mRNA sequence
Length = 759
Score = 159 bits (80), Expect = 3e-037
Identities = 386/488 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 697 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 638
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 637 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 578
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 577 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 518
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 517 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 458
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 457 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 398
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 397 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 338
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 337 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 278
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 277 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 218
Query: 575 acataccg 582
||||||||
Sbjct: 217 acataccg 210
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 153 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 94
Query: 699 g 699
|
Sbjct: 93 g 93
>gb|DR746095.1|DR746095 RTCU1_34_E04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_34_E04_A029 5', mRNA sequence
Length = 520
Score = 157 bits (79), Expect = 1e-036
Identities = 352/443 (79%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 60 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 119
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 120 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 179
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 180 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 239
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 240 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 299
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 300 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 359
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 360 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 419
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 420 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 479
Query: 515 tccaagatcagaaagctgttcaa 537
||||| |||||||| ||||||||
Sbjct: 480 tccaaaatcagaaaactgttcaa 502
>gb|CO201821.1|CO201821 RTCNT2_8_H06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_8_H06_A029 3', mRNA sequence
Length = 848
Score = 151 bits (76), Expect = 7e-035
Identities = 385/488 (78%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 785 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 726
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 725 tatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 666
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 665 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 606
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 605 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 546
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 545 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 486
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 485 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 426
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 425 aatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggca 366
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaac 574
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || |||
Sbjct: 365 tccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaac 306
Query: 575 acataccg 582
||||||||
Sbjct: 305 acataccg 298
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 241 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 182
Query: 699 g 699
|
Sbjct: 181 g 181
>gb|DR020759.1|DR020759 STRS1_39_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_D02_A034 3', mRNA sequence
Length = 533
Score = 151 bits (76), Expect = 7e-035
Identities = 367/464 (79%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 479 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 420
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 419 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 360
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 359 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 300
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 299 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 240
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgt 394
|| |||||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 239 accccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttagg 180
Query: 395 ggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgag 454
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 179 ggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaa 120
Query: 455 aatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcc 514
|||||||| || ||| |||| |||||||| || ||||||||| ||| || || |||||
Sbjct: 119 aatgatcttccgggtttgacggacactgaaaaaccaaggatgctgggacctaaaagggca 60
Query: 515 tccaagatcagaaagctgttcaaccttaacaaggatgatgatgt 558
||||| ||||||| |||||||| ||| ||| |||||||||||
Sbjct: 59 tccaaattcagaaaactgttcaatctttccaaagatgatgatgt 16
>gb|CF478064.1|CF478064 RTWW3_17_H09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_H09_A022 5', mRNA sequence
Length = 712
Score = 145 bits (73), Expect = 4e-033
Identities = 386/489 (78%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 33 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 92
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 93 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 152
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 153 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 212
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 213 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 272
Query: 335 actccc-tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccg 393
|| ||| ||||| ||||| ||||| ||||||||||||||| | || | |||||||| |
Sbjct: 273 acccccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttag 332
Query: 394 tggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtga 453
|| ||||| || |||| || || ||||| | ||| |||| ||||| |||||||| ||
Sbjct: 333 gggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaagggaga 392
Query: 454 gaatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggc 513
|||||||| || ||| |||| |||||||| || ||||||||| |||| || || |||||
Sbjct: 393 aaatgatcttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggc 452
Query: 514 ctccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaa 573
||||| |||||||| |||||||| ||| ||| || |||||||| | || || || ||
Sbjct: 453 atccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaa 512
Query: 574 cacataccg 582
|||||||||
Sbjct: 513 cacataccg 521
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 578 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 637
Query: 699 g 699
|
Sbjct: 638 g 638
>gb|CO365286.1|CO365286 RTK1_24_F08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_24_F08_A029 5', mRNA sequence
Length = 830
Score = 137 bits (69), Expect = 1e-030
Identities = 310/389 (79%), Gaps = 1/389 (0%)
Strand = Plus / Minus
Query: 194 caggaggtcagtggtgatgctctgggtgaggagttcaagggttatgtcttcaagatcatg 253
|||||||| | ||||||||| || || |||||||||||||| ||||||||||| || |||
Sbjct: 823 caggaggttaatggtgatgc-cttggagaggagttcaagggatatgtcttcaaaattatg 765
Query: 254 ggtggatgtgacaagcaaggcttcccaatgaagcaaggagttttgacttctggtcgtgtt 313
|| |||||||| ||||| || || || ||||| ||||||||| | ||| | ||||||||
Sbjct: 764 ggaggatgtgataagcagggttttcccatgaaacaaggagttcttactccaggtcgtgta 705
Query: 314 cgtcttctgctccataggggcactccctgcttccgtggttatggcaggcgtaatggtgag 373
|| || | | || || ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 704 cgcctgttattgcacagaggcaccccctgctttcgtgggtatggaaggcgtaatggtgag 645
Query: 374 cgcaggaggaagtctgtccgtggttgcatcgtgagccaagacctatctgttatcaacttg 433
| || | |||||||| | || ||||| || |||| || || ||||| | ||| ||
Sbjct: 644 aggagacgaaagtctgttaggggatgcattgttagccctgatctttctgtcttgaacctg 585
Query: 434 gtgattgtgaagaagggtgagaatgatctgcctggtctgactgacactgagaagccaagg 493
|| ||||| |||||||| || |||||||| || ||| |||| |||||||| || ||||||
Sbjct: 584 gtcattgttaagaagggagaaaatgatcttccgggtttgacggacactgaaaaaccaagg 525
Query: 494 atgaggggtcccaagagggcctccaagatcagaaagctgttcaaccttaacaaggatgat 553
||| |||| || || ||||| ||||| |||||||| |||||||| ||| ||| || |||
Sbjct: 524 atgcggggacctaaaagggcatccaaaatcagaaaactgttcaatctttccaaagaggat 465
Query: 554 gatgtacgcaagtacgtgaacacataccg 582
||||| | || || || |||||||||||
Sbjct: 464 gatgttaggaaatatgtcaacacataccg 436
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 379 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 320
Query: 699 g 699
|
Sbjct: 319 g 319
>gb|DR080489.1|DR080489 RTFEPL1_23_B11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_23_B11_A029 3', mRNA sequence
Length = 924
Score = 137 bits (69), Expect = 1e-030
Identities = 309/389 (79%)
Strand = Plus / Plus
Query: 194 caggaggtcagtggtgatgctctgggtgaggagttcaagggttatgtcttcaagatcatg 253
|||||||| | ||||||||| | || |||||||||||||| ||||||||||| || |||
Sbjct: 55 caggaggttaatggtgatgcctttggagaggagttcaagggatatgtcttcaaaattatg 114
Query: 254 ggtggatgtgacaagcaaggcttcccaatgaagcaaggagttttgacttctggtcgtgtt 313
|| |||||||| ||||| || || || ||||| ||||||||| | ||| | ||||||||
Sbjct: 115 ggaggatgtgataagcagggttttcccatgaaacaaggagttcttactccaggtcgtgta 174
Query: 314 cgtcttctgctccataggggcactccctgcttccgtggttatggcaggcgtaatggtgag 373
|| || | | || || ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 175 cgcctgttattgcacagaggcaccccctgctttcgtgggtatggaaggcgtaatggtgag 234
Query: 374 cgcaggaggaagtctgtccgtggttgcatcgtgagccaagacctatctgttatcaacttg 433
| || | |||||||| | || ||||| || |||| || || ||||| | ||| ||
Sbjct: 235 aggagacgaaagtctgttaggggatgcattgttagccctgatctttctgtcttgaacctg 294
Query: 434 gtgattgtgaagaagggtgagaatgatctgcctggtctgactgacactgagaagccaagg 493
|| ||||| |||||||| || |||||||| || ||| |||| |||||||| || ||||||
Sbjct: 295 gtcattgttaagaagggagaaaatgatcttccgggtttgacggacactgaaaaaccaagg 354
Query: 494 atgaggggtcccaagagggcctccaagatcagaaagctgttcaaccttaacaaggatgat 553
||| |||| || || ||||| ||||| |||||||| |||||||| ||| ||| || |||
Sbjct: 355 atgcggggacctaaaagggcatccaaaatcagaaaactgttcaatctttccaaagaggat 414
Query: 554 gatgtacgcaagtacgtgaacacataccg 582
||||| | || || || |||||||||||
Sbjct: 415 gatgttaggaaatatgtcaacacataccg 443
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 500 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 559
Query: 699 g 699
|
Sbjct: 560 g 560
>gb|CO368249.1|CO368249 RTK1_39_B08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_B08_A029 5', mRNA sequence
Length = 807
Score = 131 bits (66), Expect = 7e-029
Identities = 288/362 (79%)
Strand = Plus / Minus
Query: 221 gaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggcttccca 280
|||||||||||||| ||||||||||| || ||||| |||||||| ||||| || || ||
Sbjct: 798 gaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggttttccc 739
Query: 281 atgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggcactccc 340
||||| ||||||||| | ||| | |||||||| || || | | || || ||||| |||
Sbjct: 738 atgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggcaccccc 679
Query: 341 tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgc 400
||||| ||||| ||||| ||||||||||||||| | || | |||||||| | || |||
Sbjct: 678 tgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttaggggatgc 619
Query: 401 atcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgat 460
|| || |||| || || ||||| | ||| |||| ||||| |||||||| || ||||||
Sbjct: 618 attgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaaaatgat 559
Query: 461 ctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaag 520
|| || ||| |||| |||||||| || ||||||||| |||| || || ||||| |||||
Sbjct: 558 cttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggcatccaaa 499
Query: 521 atcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaacacatac 580
|||||||| |||||||| ||| ||| || |||||||| | || || || |||||||||
Sbjct: 498 atcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaacacatac 439
Query: 581 cg 582
||
Sbjct: 438 cg 437
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 380 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 321
Query: 699 g 699
|
Sbjct: 320 g 320
>gb|DR059787.1|DR059787 RTNIT1_19_F08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_F08_A029 5', mRNA sequence
Length = 712
Score = 131 bits (66), Expect = 7e-029
Identities = 288/362 (79%)
Strand = Plus / Minus
Query: 221 gaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggcttccca 280
|||||||||||||| ||||||||||| || ||||| |||||||| ||||| || || ||
Sbjct: 710 gaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggttttccc 651
Query: 281 atgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggcactccc 340
||||| ||||||||| | ||| | |||||||| || || | | || || ||||| |||
Sbjct: 650 atgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggcaccccc 591
Query: 341 tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgc 400
||||| ||||| ||||| ||||||||||||||| | || | |||||||| | || |||
Sbjct: 590 tgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttaggggatgc 531
Query: 401 atcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgat 460
|| || |||| || || ||||| | ||| |||| ||||| |||||||| || ||||||
Sbjct: 530 attgttagccctgatctttctgtcttgaacctggtcattgttaagaagggagaaaatgat 471
Query: 461 ctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaag 520
|| || ||| |||| |||||||| || ||||||||| |||| || || ||||| |||||
Sbjct: 470 cttccgggtttgacggacactgaaaaaccaaggatgcggggacctaaaagggcatccaaa 411
Query: 521 atcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaacacatac 580
|||||||| |||||||| ||| ||| || |||||||| | || || || |||||||||
Sbjct: 410 atcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtcaacacatac 351
Query: 581 cg 582
||
Sbjct: 350 cg 349
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 292 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 233
Query: 699 g 699
|
Sbjct: 232 g 232
>gb|AW010954.1|AW010954 ST13G09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST13G09, mRNA sequence
Length = 397
Score = 117 bits (59), Expect = 1e-024
Identities = 224/279 (80%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 35 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 94
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 95 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 154
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 155 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 214
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 215 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 274
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgag 373
|| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 275 accccctgctttcgtgggtatggaaggcgtaatggtgag 313
>gb|AW011056.1|AW011056 ST16B09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST16B09, mRNA sequence
Length = 490
Score = 117 bits (59), Expect = 1e-024
Identities = 224/279 (80%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 76 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 135
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 136 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 195
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 196 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 255
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 256 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 315
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgag 373
|| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 316 accccctgctttcgtgggtatggaaggcgtaatggtgag 354
>gb|AW981917.1|AW981917 PC20D01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC20D01, mRNA sequence
Length = 591
Score = 117 bits (59), Expect = 1e-024
Identities = 224/279 (80%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 100 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 159
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 160 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 219
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 220 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 279
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccataggggc 334
|| || ||||| ||||||||| | ||| | |||||||| || || | | || || |||
Sbjct: 280 tttcccatgaaacaaggagttcttactccaggtcgtgtacgcctgttattgcacagaggc 339
Query: 335 actccctgcttccgtggttatggcaggcgtaatggtgag 373
|| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 340 accccctgctttcgtgggtatggaaggcgtaatggtgag 378
>gb|CO164323.1|CO164323 FLD1_47_F06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F06_A029 3', mRNA sequence
Length = 829
Score = 117 bits (59), Expect = 1e-024
Identities = 281/355 (79%)
Strand = Plus / Plus
Query: 228 tcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggcttcccaatgaagc 287
||||||| ||||||||||| || ||||| |||||||| ||||| || || || ||||| |
Sbjct: 1 tcaagggatatgtcttcaaaattatgggaggatgtgataagcagggttttcccatgaaac 60
Query: 288 aaggagttttgacttctggtcgtgttcgtcttctgctccataggggcactccctgcttcc 347
|||||||| | ||| | |||||||| || || | | || || ||||| |||||||| |
Sbjct: 61 aaggagttcttactccaggtcgtgtacgcctgttattgcacagaggcaccccctgctttc 120
Query: 348 gtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgcatcgtga 407
|||| ||||| ||||||||||||||| | || | |||||||| | || ||||| || |
Sbjct: 121 gtgggtatggaaggcgtaatggtgagaggagacgaaagtctgttaggggatgcattgtta 180
Query: 408 gccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgatctgcctg 467
||| || || ||||| | ||| |||| ||||| |||||||| || |||||||| || |
Sbjct: 181 gccctgatctttctgtcttgaacctggtcattgttaagaagggagaaaatgatcttccgg 240
Query: 468 gtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaagatcagaa 527
|| |||| |||||||| || ||||||||| |||| || || ||||| ||||| |||||||
Sbjct: 241 gtttgacggacactgaaaaaccaaggatgcggggacctaaaagggcatccaaaatcagaa 300
Query: 528 agctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaacacataccg 582
| |||||||| ||| ||| || |||||||| | || || || |||||||||||
Sbjct: 301 aactgttcaatctttccaaagaggatgatgttaggaaatatgtcaacacataccg 355
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 412 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 471
Query: 699 g 699
|
Sbjct: 472 g 472
>gb|CF391874.1|CF391874 RTDR3_10_E03.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_E03_A022 5', mRNA
sequence
Length = 706
Score = 105 bits (53), Expect = 4e-021
Identities = 164/201 (81%)
Strand = Plus / Plus
Query: 341 tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgc 400
|||||||| || |||||||||||||| || ||||| || | || || || | || |||
Sbjct: 340 tgcttccgggggtatggcaggcgtaagggagagcgaagacgtaaatcagtgagaggatgc 399
Query: 401 atcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgat 460
|| |||||||| || || ||||| | ||||| || |||||||| |||||||| ||||||
Sbjct: 400 attgtgagccaggatctgtctgtattgaacttagttattgtgaaaaagggtgaaaatgat 459
Query: 461 ctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaag 520
|| |||||||| ||||||| ||| | ||| ||||||||||| ||||||||||| || |||
Sbjct: 460 cttcctggtctcactgacattgaaaggccgaggatgagggggcccaagagggcatctaag 519
Query: 521 atcagaaagctgttcaacctt 541
|| || ||| |||||||||||
Sbjct: 520 ataaggaagttgttcaacctt 540
Score = 87.7 bits (44), Expect = 9e-016
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || ||| | || ||||| || ||||| ||||||| |||||
Sbjct: 94 atgaagttcaatattgcaaatcctactacagggtgtcagaagaaattggaaattgatgat 153
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| || |||||| ||| | ||||||||||||| ||| |||||
Sbjct: 154 gatcagaaactccgtgcattctatgacaaaagactttcccaggaggtcaatggagatgcc 213
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagca 270
|| ||||| || |||||||| ||||||||||| || ||||| ||||||||||||||
Sbjct: 214 cttggtgacgaattcaagggctatgtcttcaaaattatgggaggatgtgacaagca 269
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 616 cagcaaggcacctaagatcca 636
|||||||||||||||||||||
Sbjct: 615 cagcaaggcacctaagatcca 635
>gb|CO364668.1|CO364668 RTK1_21_C06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_C06_A029 3', mRNA sequence
Length = 806
Score = 103 bits (52), Expect = 2e-020
Identities = 262/332 (78%)
Strand = Plus / Plus
Query: 251 atgggtggatgtgacaagcaaggcttcccaatgaagcaaggagttttgacttctggtcgt 310
||||| |||||||| ||||| || || || ||||| ||||||||| | ||| | ||||||
Sbjct: 2 atgggaggatgtgataagcagggttttcccatgaaacaaggagttcttactccaggtcgt 61
Query: 311 gttcgtcttctgctccataggggcactccctgcttccgtggttatggcaggcgtaatggt 370
|| || || | || || || ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct: 62 gtacgcctgttactgcacagaggcaccccctgctttcgtgggtatggaaggcgtaatggt 121
Query: 371 gagcgcaggaggaagtctgtccgtggttgcatcgtgagccaagacctatctgttatcaac 430
||| | || | |||||||| | || ||||| || |||| || || ||||| | |||
Sbjct: 122 gagaggagacgaaagtctgttaggggatgcattgttagccctgatctttctgtcttgaac 181
Query: 431 ttggtgattgtgaagaagggtgagaatgatctgcctggtctgactgacactgagaagcca 490
|||| ||||| |||||||| || |||||||| || ||| |||| |||||||| || |||
Sbjct: 182 ctggtcattgttaagaagggagaaaatgatcttccgggtttgacggacactgaaaaacca 241
Query: 491 aggatgaggggtcccaagagggcctccaagatcagaaagctgttcaaccttaacaaggat 550
|||||| |||| || || ||||| ||||| |||||||| |||||||| ||| ||| ||
Sbjct: 242 aggatgcggggacctaaaagggcatccaaaatcagaaaactgttcaatctttccaaagag 301
Query: 551 gatgatgtacgcaagtacgtgaacacataccg 582
|||||||| | || || || |||||||||||
Sbjct: 302 gatgatgttaggaaatatgtcaacacataccg 333
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 390 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 449
Query: 699 g 699
|
Sbjct: 450 g 450
>gb|CV033022.1|CV033022 RTNACL1_19_F02.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_F02_A029 5', mRNA sequence
Length = 682
Score = 101 bits (51), Expect = 6e-020
Identities = 201/251 (80%)
Strand = Plus / Minus
Query: 332 ggcactccctgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtc 391
||||| |||||||| ||||| ||||| ||||||||||||||| | || | ||||||||
Sbjct: 677 ggcaccccctgctttcgtgggtatggaaggcgtaatggtgagaggagacgaaagtctgtt 618
Query: 392 cgtggttgcatcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggt 451
| || ||||| || |||| || || ||||| | ||| |||| ||||| ||||||||
Sbjct: 617 aggggatgcattgttagccctgatctttctgtcttgaacctggtcattgttaagaaggga 558
Query: 452 gagaatgatctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagg 511
|| |||||||| || |||||||| |||||||| || ||||||||| |||| || || |||
Sbjct: 557 gaaaatgatcttccgggtctgacggacactgaaaaaccaaggatgcggggacctaaaagg 498
Query: 512 gcctccaagatcagaaagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtg 571
|| ||||| |||||||| |||||||| ||| ||| || |||||||| | || || ||
Sbjct: 497 gcatccaaaatcagaaaactgttcaatctttccaaagaggatgatgttaggaaatatgtc 438
Query: 572 aacacataccg 582
|||||||||||
Sbjct: 437 aacacataccg 427
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 370 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 311
Query: 699 g 699
|
Sbjct: 310 g 310
>gb|DN614362.1|DN614362 EST967412 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC320, mRNA sequence
Length = 427
Score = 99.6 bits (50), Expect = 2e-019
Identities = 176/218 (80%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 218 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 159
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 158 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 99
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 98 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 39
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgt 312
|| || ||||| ||||||||| | ||| | ||||||||
Sbjct: 38 tttcccatgaaacaaggagttcttactccgggtcgtgt 1
>gb|DR056148.1|DR056148 RTCA1_28_H07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_28_H07_A029 3', mRNA sequence
Length = 654
Score = 99.6 bits (50), Expect = 2e-019
Identities = 176/218 (80%)
Strand = Plus / Minus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 264 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 205
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 204 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 145
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 144 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 85
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgt 312
|| || ||||| ||||||||| | ||| | ||||||||
Sbjct: 84 tttcccatgaaacaaggagttcttactccaggtcgtgt 47
>gb|DT629241.1|DT629241 EST1155811 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD718 5' end, mRNA sequence
Length = 427
Score = 99.6 bits (50), Expect = 2e-019
Identities = 176/218 (80%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || || |||| || ||||| ||||||||||| ||||||||
Sbjct: 210 atgaagttcaatattgcaaatcccaccacgggatgccagaagaagctggagatcgatgat 269
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| |||||||| ||| | | |||||||| | |||||||||
Sbjct: 270 gatcagaaactccgtgcattttatgataagaggcttgcacaggaggttaatggtgatgcc 329
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| || |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||
Sbjct: 330 cttggagaggagttcaagggatatgtcttcaaaattatgggaggatgtgataagcagggt 389
Query: 275 ttcccaatgaagcaaggagttttgacttctggtcgtgt 312
|| || ||||| ||||||||| | ||| | ||||||||
Sbjct: 390 tttcccatgaaacaaggagttcttactccgggtcgtgt 427
>gb|CO164397.1|CO164397 FLD1_47_F06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F06_A029 5', mRNA sequence
Length = 844
Score = 97.6 bits (49), Expect = 9e-019
Identities = 272/345 (78%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 238 tgtcttcaagatcatgggtggatgtgacaagcaaggcttcccaatgaagcaaggagtttt 297
||||||||| || ||||| |||||||| ||||| || || || ||||| ||||||||| |
Sbjct: 1 tgtcttcaa-attatgggaggatgtgataagcagggttttcccatgaaacaaggagttct 59
Query: 298 gacttctggtcgtgttcgtcttctgctccataggggcactccctgcttccgtggttatgg 357
||| | |||||||| || || | | || || ||||| |||||||| ||||| |||||
Sbjct: 60 tactccaggtcgtgtacgcctgttattgcacagaggcaccccctgctttcgtgggtatgg 119
Query: 358 caggcgtaatggtgagcgcaggaggaagtctgtccgtggttgcatcgtgagccaagacct 417
||||||||||||||| | || | |||||||| | || ||||| || |||| || ||
Sbjct: 120 aaggcgtaatggtgagaggagacgaaagtctgttaggggatgcattgttagccctgatct 179
Query: 418 atctgttatcaacttggtgattgtgaagaagggtgagaatgatctgcctggtctgactga 477
||||| | ||| |||| ||||| |||||||| || |||||||| || ||| |||| ||
Sbjct: 180 ttctgtcttgaacctggtcattgttaagaagggagaaaatgatcttccgggtttgacgga 239
Query: 478 cactgagaagccaaggatgaggggtcccaagagggcctccaagatcagaaagctgttcaa 537
|||||| || ||||||||| |||| || || ||||| ||||| |||||||| ||||||||
Sbjct: 240 cactgaaaaaccaaggatgcggggacctaaaagggcatccaaaatcagaaaactgttcaa 299
Query: 538 ccttaacaaggatgatgatgtacgcaagtacgtgaacacataccg 582
||| ||| || |||||||| | || || || |||||||||||
Sbjct: 300 tctttccaaagaggatgatgttaggaaatatgtcaacacataccg 344
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 639 ggcttgtgacacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaaga 698
||||||| ||||| ||||| || || ||||||||||||||||| || || ||||| ||||
Sbjct: 401 ggcttgtaacaccattgactctgcaaaggaagcgtgctagaattgcagaaaagaaaaaga 460
Query: 699 g 699
|
Sbjct: 461 g 461
>gb|DR691463.1|DR691463 EST1081550 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD872 3' end, mRNA sequence
Length = 794
Score = 97.6 bits (49), Expect = 9e-019
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 341 tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgc 400
|||||||| || |||||||||||||| || ||||| || | || || || | || |||
Sbjct: 324 tgcttccgggggtatggcaggcgtaagggagagcgaagacgtaaatcagtgagaggatgc 383
Query: 401 atcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgat 460
|| |||||||| || || ||||| | ||||| || |||||||| |||||||| ||||||
Sbjct: 384 attgtgagccaggatctgtctgtattgaacttagttattgtgaaaaagggtgaaaatgat 443
Query: 461 ctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaag 520
|| |||||||| ||||||| ||| | ||| ||||||||||| ||||||||||| || |||
Sbjct: 444 cttcctggtctcactgacattgaaaggccgaggatgagggggcccaagagggcatctaag 503
Query: 521 atcagaaagctgttcaa 537
|| || ||| |||||||
Sbjct: 504 ataaggaagttgttcaa 520
Score = 95.6 bits (48), Expect = 4e-018
Identities = 162/200 (81%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || ||| | || ||||| || ||||| ||||||| |||||
Sbjct: 78 atgaagttcaatattgcaaatcctactacagggtgtcagaagaaattggaaattgatgat 137
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| || |||||| ||| | ||||||||||||| ||| |||||
Sbjct: 138 gatcagaaactccgtgcattctatgacaaaagactttcccaggaggtcaatggagatgcc 197
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| ||||| || |||||||| ||||||||||| || ||||| |||||||||||||| ||
Sbjct: 198 cttggtgacgaattcaagggctatgtcttcaaaattatgggaggatgtgacaagcaggga 257
Query: 275 ttcccaatgaagcaaggagt 294
|| || ||||| ||||||||
Sbjct: 258 tttcccatgaaacaaggagt 277
Score = 42.1 bits (21), Expect = 0.048
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 713 aagtctgaggctgctgagtaccagaagcttcttgcccagaggctgaaggaacagagggac 772
||||| ||||| ||||| ||||||||||| ||||| |||| |||| |||||| | |||
Sbjct: 696 aagtcagaggcagctgaataccagaagctccttgcaacgaggttgaaagaacagcgcgac 755
Query: 773 cgccggagcgagagcttggccaaga 797
|| | |||||||| ||||| ||||
Sbjct: 756 cgtagaagcgagagtttggcaaaga 780
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 616 cagcaaggcacctaagatcca 636
|||||||||||||||||||||
Sbjct: 599 cagcaaggcacctaagatcca 619
>gb|DR695049.1|DR695049 EST1085142 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ85 3' end, mRNA sequence
Length = 835
Score = 97.6 bits (49), Expect = 9e-019
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 341 tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgc 400
|||||||| || |||||||||||||| || ||||| || | || || || | || |||
Sbjct: 326 tgcttccgggggtatggcaggcgtaagggagagcgaagacgtaaatcagtgagaggatgc 385
Query: 401 atcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgat 460
|| |||||||| || || ||||| | ||||| || |||||||| |||||||| ||||||
Sbjct: 386 attgtgagccaggatctgtctgtattgaacttagttattgtgaaaaagggtgaaaatgat 445
Query: 461 ctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaag 520
|| |||||||| ||||||| ||| | ||| ||||||||||| ||||||||||| || |||
Sbjct: 446 cttcctggtctcactgacattgaaaggccgaggatgagggggcccaagagggcatctaag 505
Query: 521 atcagaaagctgttcaa 537
|| || ||| |||||||
Sbjct: 506 ataaggaagttgttcaa 522
Score = 95.6 bits (48), Expect = 4e-018
Identities = 162/200 (81%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || ||| | || ||||| || ||||| ||||||| |||||
Sbjct: 80 atgaagttcaatattgcaaatcctactacagggtgtcagaagaaattggaaattgatgat 139
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| || |||||| ||| | ||||||||||||| ||| |||||
Sbjct: 140 gatcagaaactccgtgcattctatgacaaaagactttcccaggaggtcaatggagatgcc 199
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| ||||| || |||||||| ||||||||||| || ||||| |||||||||||||| ||
Sbjct: 200 cttggtgacgaattcaagggctatgtcttcaaaattatgggaggatgtgacaagcaggga 259
Query: 275 ttcccaatgaagcaaggagt 294
|| || ||||| ||||||||
Sbjct: 260 tttcccatgaaacaaggagt 279
Score = 44.1 bits (22), Expect = 0.012
Identities = 142/182 (78%)
Strand = Plus / Plus
Query: 616 cagcaaggcacctaagatccaacggcttgtgacacccttgaccctccagaggaagcgtgc 675
||||||||||||||||||||| | || ||||| ||| | || || || ||||||||
Sbjct: 601 cagcaaggcacctaagatccagagactggtgactcccctaacactgcaaaggaagcgcag 660
Query: 676 tagaatcgctgacaagaagaagaggataactaagaagaagtctgaggctgctgagtacca 735
|||||| || || |||| |||| || | ||||| ||||| ||||| ||||| |||||
Sbjct: 661 tagaattgcagaaaagaggaagcgggttgctaaggccaagtcagaggcagctgaatacca 720
Query: 736 gaagcttcttgcccagaggctgaaggaacagagggaccgccggagcgagagcttggccaa 795
|||||| ||||| |||| |||| |||||| | ||||| | |||||||| ||||| ||
Sbjct: 721 gaagctccttgcaacgaggttgaaagaacagcgcgaccgtagaagcgagagtttggcaaa 780
Query: 796 ga 797
||
Sbjct: 781 ga 782
>gb|DT639071.1|DT639071 EST1154002 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHM69 3' end, mRNA sequence
Length = 829
Score = 97.6 bits (49), Expect = 9e-019
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 341 tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgc 400
|||||||| || |||||||||||||| || ||||| || | || || || | || |||
Sbjct: 334 tgcttccgggggtatggcaggcgtaagggagagcgaagacgtaaatcagtgagaggatgc 393
Query: 401 atcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgat 460
|| |||||||| || || ||||| | ||||| || |||||||| |||||||| ||||||
Sbjct: 394 attgtgagccaggatctgtctgtattgaacttagttattgtgaaaaagggtgaaaatgat 453
Query: 461 ctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaag 520
|| |||||||| ||||||| ||| | ||| ||||||||||| ||||||||||| || |||
Sbjct: 454 cttcctggtctcactgacattgaaaggccgaggatgagggggcccaagagggcatctaag 513
Query: 521 atcagaaagctgttcaa 537
|| || ||| |||||||
Sbjct: 514 ataaggaagttgttcaa 530
Score = 95.6 bits (48), Expect = 4e-018
Identities = 162/200 (81%)
Strand = Plus / Plus
Query: 95 atgaagttcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgac 154
||||||||||| || || || ||| | || ||||| || ||||| ||||||| |||||
Sbjct: 88 atgaagttcaatattgcaaatcctactacagggtgtcagaagaaattggaaattgatgat 147
Query: 155 gaccagaagctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgct 214
|| ||||| || ||||| || |||||| ||| | ||||||||||||| ||| |||||
Sbjct: 148 gatcagaaactccgtgcattctatgacaaaagactttcccaggaggtcaatggagatgcc 207
Query: 215 ctgggtgaggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggc 274
|| ||||| || |||||||| ||||||||||| || ||||| |||||||||||||| ||
Sbjct: 208 cttggtgacgaattcaagggctatgtcttcaaaattatgggaggatgtgacaagcaggga 267
Query: 275 ttcccaatgaagcaaggagt 294
|| || ||||| ||||||||
Sbjct: 268 tttcccatgaaacaaggagt 287
Score = 44.1 bits (22), Expect = 0.012
Identities = 142/182 (78%)
Strand = Plus / Plus
Query: 616 cagcaaggcacctaagatccaacggcttgtgacacccttgaccctccagaggaagcgtgc 675
||||||||||||||||||||| | || ||||| ||| | || || || ||||||||
Sbjct: 609 cagcaaggcacctaagatccagagactggtgactcccctaacactgcaaaggaagcgcag 668
Query: 676 tagaatcgctgacaagaagaagaggataactaagaagaagtctgaggctgctgagtacca 735
|||||| || || |||| |||| || | ||||| ||||| ||||| ||||| |||||
Sbjct: 669 tagaattgcagaaaagaggaagcgggttgctaaggccaagtcagaggcagctgaatacca 728
Query: 736 gaagcttcttgcccagaggctgaaggaacagagggaccgccggagcgagagcttggccaa 795
|||||| ||||| |||| |||| |||||| | ||||| | |||||||| ||||| ||
Sbjct: 729 gaagctccttgcaacgaggttgaaagaacagcgcgaccgtagaagcgagagtttggcaaa 788
Query: 796 ga 797
||
Sbjct: 789 ga 790
>gb|CX649114.1|CX649114 COLD1_33_C09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_33_C09_A029 3', mRNA sequence
Length = 472
Score = 95.6 bits (48), Expect = 4e-018
Identities = 261/332 (78%)
Strand = Plus / Minus
Query: 251 atgggtggatgtgacaagcaaggcttcccaatgaagcaaggagttttgacttctggtcgt 310
||||| |||||||| ||||| || || || ||||| ||||||||| | ||| | ||||||
Sbjct: 426 atgggaggatgtgataagcagggttttcccatgaaacaaggagttcttactccaggtcgt 367
Query: 311 gttcgtcttctgctccataggggcactccctgcttccgtggttatggcaggcgtaatggt 370
|| || || | | || || ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct: 366 gtacgcctgttattgcacagaggcaccccctgctttcgtgggtatggaaggcgtaatggt 307
Query: 371 gagcgcaggaggaagtctgtccgtggttgcatcgtgagccaagacctatctgttatcaac 430
||| | || | |||||||| | || ||||| || |||| || || ||||| | |||
Sbjct: 306 gagaggagacgaaagtctgttaggggatgcattgttagccctgatctttctgtcttgaac 247
Query: 431 ttggtgattgtgaagaagggtgagaatgatctgcctggtctgactgacactgagaagcca 490
|||| ||||| |||||||| || |||||||| || ||| |||| |||||||| || |||
Sbjct: 246 ctggtcattgttaagaagggagaaaatgatcttccgggtttgacggacactgaaaaacca 187
Query: 491 aggatgaggggtcccaagagggcctccaagatcagaaagctgttcaaccttaacaaggat 550
|||||| |||| || || ||||| ||||| |||||||| |||||||| ||| ||| ||
Sbjct: 186 aggatgcggggacctaaaagggcatccaaaatcagaaaactgttcaatctttccaaagag 127
Query: 551 gatgatgtacgcaagtacgtgaacacataccg 582
|||||||| | || || || |||||||||||
Sbjct: 126 gatgatgttaggaaatatgtcaacacataccg 95
>gb|DR685341.1|DR685341 EST1075418 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB270 3' end, mRNA sequence
Length = 749
Score = 95.6 bits (48), Expect = 4e-018
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 191 tcccaggaggtcagtggtgatgctctgggtgaggagttcaagggttatgtcttcaagatc 250
||||||||||||| ||| ||||| || ||||| || |||||||| ||||||||||| ||
Sbjct: 33 tcccaggaggtcaatggagatgcccttggtgacgaattcaagggctatgtcttcaaaatt 92
Query: 251 atgggtggatgtgacaagcaaggcttcccaatgaagcaaggagt 294
||||| ||||||||||||||||| || || ||||| ||||||||
Sbjct: 93 atgggaggatgtgacaagcaaggatttcccatgaaacaaggagt 136
Score = 81.8 bits (41), Expect = 6e-014
Identities = 159/197 (80%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 341 tgcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgc 400
|||||||| || |||||||||||||| || ||||| || | || || || | || |||
Sbjct: 183 tgcttccgggggtatggcaggcgtaagggagagcgaagacgtaaatcagtgagaggatgc 242
Query: 401 atcgtgagccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgat 460
|| |||||||| || || ||||| | ||||| || |||||||| ||| |||| ||||||
Sbjct: 243 attgtgagccaggatctgtctgtattgaacttagttattgtgaa-aagagtgaaaatgat 301
Query: 461 ctgcctggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaag 520
|| |||||||| ||||||| ||| | ||| ||||||||||| ||||||||||| || |||
Sbjct: 302 cttcctggtctcactgacattgaaaggccgaggatgagggggcccaagagggcatctaag 361
Query: 521 atcagaaagctgttcaa 537
|| || ||| |||||||
Sbjct: 362 ataaggaagttgttcaa 378
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 616 cagcaaggcacctaagatcca 636
|||||||||||||||||||||
Sbjct: 457 cagcaaggcacctaagatcca 477
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,756
Number of Sequences: 355925
Number of extensions: 139756
Number of successful extensions: 43944
Number of sequences better than 0.5: 88
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43596
Number of HSP's gapped (non-prelim): 348
length of query: 1101
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1082
effective length of database: 210,514,662
effective search space: 227776864284
effective search space used: 227776864284
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)