BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.392
(725 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW290111.1|AW290111 NXNV010D03F Nsf Xylem Normal wood Ve... 98 6e-019
gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip ... 98 6e-019
gb|CD026738.1|CD026738 NXNV010D03 Nsf Xylem Normal wood Ver... 98 6e-019
gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered lo... 98 6e-019
gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus pota... 98 6e-019
gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus ad... 98 6e-019
gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus... 98 6e-019
gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C fo... 98 6e-019
gb|DR012617.1|DR012617 HEAT1_14_A11.b1_A029 Root at 37 C fo... 98 6e-019
gb|DR012699.1|DR012699 HEAT1_14_A11.g1_A029 Root at 37 C fo... 98 6e-019
gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch... 98 6e-019
gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calc... 98 6e-019
gb|DR091549.1|DR091549 RTAL1_22_H09.b1_A029 Roots plus adde... 98 6e-019
gb|DR744660.1|DR744660 RTCU1_24_B03.b1_A029 Roots plus adde... 98 6e-019
gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus adde... 98 6e-019
gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, compl... 98 6e-019
gb|AW289804.1|AW289804 NXNV006D09F Nsf Xylem Normal wood Ve... 94 9e-018
gb|CD028390.1|CD028390 NXNV006D09 Nsf Xylem Normal wood Ver... 94 9e-018
gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clon... 90 1e-016
gb|AJ541803.1|AJ541803 AJ541803 Pinus pinaster differentiat... 90 1e-016
gb|BF220810.1|BF220810 NXCI_154_B05_F NXCI (Nsf Xylem Compr... 86 2e-015
gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed... 74 9e-012
gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control P... 74 9e-012
gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control P... 74 9e-012
gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control P... 74 9e-012
gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control P... 74 9e-012
gb|CO200857.1|CO200857 RTCNT2_2_B11.b1_A029 Root control 2 ... 74 9e-012
gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus pota... 74 9e-012
gb|CV034792.1|CV034792 RTNACL1_11_D05.g1_A029 Roots plus ad... 74 9e-012
gb|DR022118.1|DR022118 STRS1_49_A10.b1_A034 Shoot tip pitch... 74 9e-012
gb|DR110346.1|DR110346 RTS1_10_H03.b1_A029 Roots minus sulf... 74 9e-012
gb|DR167453.1|DR167453 RTPHOS1_18_H05.g1_A029 Roots minus p... 74 9e-012
gb|AA556373.1|AA556373 228 Loblolly pine C Pinus taeda cDNA... 70 1e-010
gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clon... 70 1e-010
gb|CD019977.1|CD019977 NXNV007H12 Nsf Xylem Normal wood Ver... 66 2e-009
gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stresse... 62 3e-008
gb|CF396280.1|CF396280 RTDS2_21_H12.b1_A021 Drought-stresse... 58 5e-007
gb|DR011478.1|DR011478 HEAT1_6_A10.b1_A029 Root at 37 C for... 58 5e-007
gb|CF395387.1|CF395387 RTDS2_11_H06.b1_A021 Drought-stresse... 56 2e-006
gb|CD026241.1|CD026241 NXSI_124_G01_F NXSI (Nsf Xylem Side ... 54 8e-006
gb|AI812952.1|AI812952 22G9 Pine Lambda Zap Xylem library P... 52 3e-005
gb|BE662548.1|BE662548 ST87/ST87F06 Pine TriplEx shoot tip ... 52 3e-005
gb|BG039134.1|BG039134 NXSI_095_C06_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|CV033612.1|CV033612 RTNACL1_35_C08.g1_A029 Roots plus ad... 50 1e-004
gb|BF518150.1|BF518150 NXSI_035_F06_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|CF390065.1|CF390065 RTDR2_12_D12.b1_A021 Loblolly pine r... 48 5e-004
gb|DR010814.1|DR010814 HEAT1_1_B02.g1_A029 Root at 37 C for... 46 0.002
gb|CD016626.1|CD016626 NXCI_040_C03_F NXCI (Nsf Xylem Compr... 42 0.031
gb|DR021364.1|DR021364 STRS1_44_D10.b1_A034 Shoot tip pitch... 42 0.031
gb|DR021438.1|DR021438 STRS1_44_D10.g1_A034 Shoot tip pitch... 42 0.031
gb|DR058951.1|DR058951 RTNIT1_14_G10.g1_A029 Roots minus ni... 42 0.031
gb|DR091933.1|DR091933 RTAL1_25_A06.b1_A029 Roots plus adde... 42 0.031
gb|DR097639.1|DR097639 STRR1_36_C01.b1_A033 Stem Response R... 42 0.031
gb|DR683210.1|DR683210 EST1073286 Normalized pine embryo li... 40 0.12
gb|DR685550.1|DR685550 EST1075627 Normalized pine embryo li... 40 0.12
gb|DT631234.1|DT631234 EST1146165 Normalized pine embryo li... 40 0.12
gb|DT632868.1|DT632868 EST1147799 Normalized pine embryo li... 40 0.12
>gb|AW290111.1|AW290111 NXNV010D03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D03 5', mRNA sequence
Length = 346
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 94 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 153
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 154 gatttcaaggatgatcc 170
Score = 42.1 bits (21), Expect = 0.031
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 217 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 276
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||| || |||||||| ||||||| ||| ||||||||
Sbjct: 277 gccaagaagttagcagaggaaacatgggccaaacacaagga 317
>gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST84/ST84D02, mRNA sequence
Length = 421
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 124 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 183
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 184 gatttcaaggatgatcc 200
>gb|CD026738.1|CD026738 NXNV010D03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D03 5' similar to Arabidopsis thaliana sequence
At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 346
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 94 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 153
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 154 gatttcaaggatgatcc 170
Score = 42.1 bits (21), Expect = 0.031
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 217 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 276
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||| || |||||||| ||||||| ||| ||||||||
Sbjct: 277 gccaagaagttagcagaggaaacatgggccaaacacaagga 317
>gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_H04_A021 3', mRNA sequence
Length = 551
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 301 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 360
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 361 gatttcaaggatgatcc 377
Score = 42.1 bits (21), Expect = 0.031
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 424 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 483
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||| || |||||||| ||||||| ||| ||||||||
Sbjct: 484 gccaagaagttagcagaggaaacatgggccaaacacaagga 524
>gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 5', mRNA sequence
Length = 797
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 241 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 182
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 181 gatttcaaggatgatcc 165
>gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 3', mRNA sequence
Length = 758
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 508 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 567
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 568 gatttcaaggatgatcc 584
Score = 42.1 bits (21), Expect = 0.031
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 631 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 690
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||| || |||||||| ||||||| ||| ||||||||
Sbjct: 691 gccaagaagttagcagaggaaacatgggccaaacacaagga 731
>gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C01_A029 5', mRNA sequence
Length = 845
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 712 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 653
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 652 gatttcaaggatgatcc 636
Score = 48.1 bits (24), Expect = 5e-004
Identities = 120/152 (78%)
Strand = Plus / Minus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 589 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 530
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 529 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 470
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|| ||||| ||||||||||| ||||| |||||
Sbjct: 469 gacgaggcagagaaaaagaaagaagaggagga 438
>gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 5', mRNA sequence
Length = 755
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 272 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 213
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 212 gatttcaaggatgatcc 196
Score = 42.1 bits (21), Expect = 0.031
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 149 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 90
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||| || |||||||| ||||||| ||| ||||||||
Sbjct: 89 gccaagaagttagcagaggaaacatgggccaaacacaagga 49
>gb|DR012617.1|DR012617 HEAT1_14_A11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_A11_A029 3', mRNA sequence
Length = 791
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 86 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 145
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 146 gatttcaaggatgatcc 162
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 209 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 268
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 269 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 328
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|||||||| ||||||||||| ||||| |||||
Sbjct: 329 gatgaggcagagaaaaagaaagaagaggagga 360
>gb|DR012699.1|DR012699 HEAT1_14_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_A11_A029 5', mRNA sequence
Length = 817
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 87 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 146
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 147 gatttcaaggatgatcc 163
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 210 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 269
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 270 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 329
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|||||||| ||||||||||| ||||| |||||
Sbjct: 330 gatgaggcagagaaaaagaaagaagaggagga 361
>gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_G03_A034 5', mRNA sequence
Length = 867
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 242 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 301
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 302 gatttcaaggatgatcc 318
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 365 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 424
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 425 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 484
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|||||||| ||||||||||| ||||| |||||
Sbjct: 485 gatgaggcagagaaaaagaaagaagaggagga 516
>gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C03_A029 5', mRNA sequence
Length = 860
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 664 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 723
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 724 gatttcaaggatgatcc 740
>gb|DR091549.1|DR091549 RTAL1_22_H09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_H09_A029 3', mRNA sequence
Length = 751
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 22 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 81
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 82 gatttcaaggatgatcc 98
Score = 48.1 bits (24), Expect = 5e-004
Identities = 120/152 (78%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 145 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 204
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 205 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 264
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|| ||||| ||||||||||| ||||| |||||
Sbjct: 265 gacgaggcagagaaaaagaaagaagaggagga 296
>gb|DR744660.1|DR744660 RTCU1_24_B03.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 3', mRNA sequence
Length = 816
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 87 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 146
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 147 gatttcaaggatgatcc 163
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 210 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 269
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 270 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 329
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|||||||| ||||||||||| ||||| |||||
Sbjct: 330 gatgaggcagagaaaaagaaagaagaggagga 361
>gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 5', mRNA sequence
Length = 747
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 494 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 553
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 554 gatttcaaggatgatcc 570
Score = 42.1 bits (21), Expect = 0.031
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 617 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 676
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||| || |||||||| ||||||| ||| ||||||||
Sbjct: 677 gccaagaagttagcagaggaaacatgggccaaacacaagga 717
>gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, complete cds
Length = 1593
Score = 97.6 bits (49), Expect = 6e-019
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 864 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 923
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 924 gatttcaaggatgatcc 940
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 987 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 1046
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 1047 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 1106
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|||||||| ||||||||||| ||||| |||||
Sbjct: 1107 gatgaggcagagaaaaagaaagaagaggagga 1138
>gb|AW289804.1|AW289804 NXNV006D09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006D09 5', mRNA sequence
Length = 418
Score = 93.7 bits (47), Expect = 9e-018
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 272 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 331
Query: 69 gatttcaaggatgat 83
|||||||||||||||
Sbjct: 332 gatttcaaggatgat 346
>gb|CD028390.1|CD028390 NXNV006D09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006D09 5' similar to Arabidopsis thaliana sequence
At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 418
Score = 93.7 bits (47), Expect = 9e-018
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 272 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaatgattgacaatcct 331
Query: 69 gatttcaaggatgat 83
|||||||||||||||
Sbjct: 332 gatttcaaggatgat 346
>gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clone RN06A11 similar to
CALRETICULIN, mRNA sequence
Length = 676
Score = 89.7 bits (45), Expect = 1e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || || |||||||| ||
Sbjct: 566 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaataattgacaatcct 625
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 626 gatttcaaggatgatcc 642
>gb|AJ541803.1|AJ541803 AJ541803 Pinus pinaster differentiating xylem adult Pinus pinaster
cDNA clone PP001B06, mRNA sequence
Length = 702
Score = 89.7 bits (45), Expect = 1e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||||| || || |||||||| ||
Sbjct: 95 aagaaaattaagaatcctaactacaagggtaaatggaaggctccaataattgacaatcct 154
Query: 69 gatttcaaggatgatcc 85
|||||||||||||||||
Sbjct: 155 gatttcaaggatgatcc 171
Score = 48.1 bits (24), Expect = 5e-004
Identities = 120/152 (78%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 218 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 277
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 278 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 337
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|| ||||| ||||||||||| ||||| |||||
Sbjct: 338 gacgaggcagagaaaaagaaagaagaggagga 369
>gb|BF220810.1|BF220810 NXCI_154_B05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_154_B05 5' similar to Arabidopsis
thaliana sequence At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 378
Score = 85.7 bits (43), Expect = 2e-015
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccca 68
|||||||| ||||| ||||||||| |||||||||||||| | || ||||||||||| ||
Sbjct: 263 aagaaaattaagaatcctaactacaagggtaaatggaagnctccaatgattgacaatcct 322
Query: 69 gatttcaaggatga 82
||||||||||||||
Sbjct: 323 gatttcaaggatga 336
>gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_A10_A021 5', mRNA sequence
Length = 755
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 391 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 450
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 451 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 510
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 511 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 570
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 571 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 615
>gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 3', mRNA sequence
Length = 689
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 83 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 142
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 143 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 202
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 203 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 262
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 263 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 307
>gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 5', mRNA sequence
Length = 565
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 292 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 351
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 352 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 411
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 412 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 471
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 472 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 516
>gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 3', mRNA sequence
Length = 701
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 81 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 140
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 141 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 200
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 201 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 260
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 261 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 305
>gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 5', mRNA sequence
Length = 709
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 238 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 297
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 298 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 357
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 358 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 417
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 418 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 462
>gb|CO200857.1|CO200857 RTCNT2_2_B11.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_B11_A029 3', mRNA sequence
Length = 625
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 28 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 87
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 88 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 147
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 148 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 207
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 208 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 252
>gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_A06_A029 3', mRNA sequence
Length = 825
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 212 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 271
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 272 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 331
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 332 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 391
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 392 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 436
>gb|CV034792.1|CV034792 RTNACL1_11_D05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_11_D05_A029 5', mRNA sequence
Length = 646
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Minus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 591 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 532
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 531 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 472
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 471 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 412
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 411 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 367
>gb|DR022118.1|DR022118 STRS1_49_A10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_49_A10_A034 3', mRNA sequence
Length = 848
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 229 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 288
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 289 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 348
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 349 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 408
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 409 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 453
>gb|DR110346.1|DR110346 RTS1_10_H03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_H03_A029 3', mRNA sequence
Length = 825
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 200 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 259
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 260 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 319
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 320 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 379
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 380 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 424
>gb|DR167453.1|DR167453 RTPHOS1_18_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_H05_A029 5', mRNA sequence
Length = 509
Score = 73.8 bits (37), Expect = 9e-012
Identities = 178/225 (79%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 205 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 264
Query: 68 agatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattga 127
|||||| |||||||||||| | |||||| || ||| ||||||||| | || || ||
Sbjct: 265 agattttaaggatgatccggaactttatgttttccccagtctgaaatacttaggaatcga 324
Query: 128 gctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgc 187
|| |||||||| |||||||| || || ||||| ||||| | | |||||||||||
Sbjct: 325 actatggcaggtgaaatcaggaacattatttgataacattttagtatgtgatgatcctga 384
Query: 188 gttggccaagacttttgcagaggagacatggggcaagcacaagga 232
|| || |||| || ||||||||||||||||| || ||||||||
Sbjct: 385 gtatgcgaagaagttggcagaggagacatggggaaaacacaagga 429
>gb|AA556373.1|AA556373 228 Loblolly pine C Pinus taeda cDNA clone 1C10G, mRNA sequence
Length = 638
Score = 69.9 bits (35), Expect = 1e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 51 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 110
Query: 68 agatttcaaggatgatccg 86
|||||| ||||||||||||
Sbjct: 111 agattttaaggatgatccg 129
>gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clone RN53F09, mRNA sequence
Length = 588
Score = 69.9 bits (35), Expect = 1e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 155 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 214
Query: 68 agatttcaaggatgatccg 86
|||||| ||||||||||||
Sbjct: 215 agattttaaggatgatccg 233
>gb|CD019977.1|CD019977 NXNV007H12 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV007H12 5' similar to Arabidopsis thaliana sequence
At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 179
Score = 65.9 bits (33), Expect = 2e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 10 agaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccag 69
||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||||
Sbjct: 62 agaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatccag 121
Query: 70 atttcaaggatgatccg 86
|||| ||||||||||||
Sbjct: 122 attttaaggatgatccg 138
>gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_H12_A021 5', mRNA sequence
Length = 752
Score = 61.9 bits (31), Expect = 3e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 347 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 406
Query: 68 agatttcaaggatgatccg 86
|||||| ||||| ||||||
Sbjct: 407 agattttaaggaagatccg 425
>gb|CF396280.1|CF396280 RTDS2_21_H12.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_H12_A021 3', mRNA sequence
Length = 587
Score = 58.0 bits (29), Expect = 5e-007
Identities = 146/185 (78%)
Strand = Plus / Plus
Query: 48 gcacctatgattgacaacccagatttcaaggatgatccgtacatttatgcatttgacagc 107
||||| ||||||||||| |||||||| |||||||||||| | |||||| || |||
Sbjct: 25 gcaccaatgattgacaatccagattttaaggatgatccggaactttatgttttccccagt 84
Query: 108 ctgaaatacattggcattgagctgtggcaggttaaatcaggcactttgtttgacaacatc 167
||||||||| | || || || || |||||||| |||||||| || || ||||| |||||
Sbjct: 85 ctgaaatacttaggaatcgaactatggcaggtgaaatcaggaacattatttgataacatt 144
Query: 168 atcatcactgatgatcctgcgttggccaagacttttgcagaggagacatggggcaagcac 227
| | ||||||||||| || || |||| || ||||||||||||||||| || |||
Sbjct: 145 ttagtatgtgatgatcctgagtatgcgaagaagttggcagaggagacatggggaaaacac 204
Query: 228 aagga 232
|||||
Sbjct: 205 aagga 209
>gb|DR011478.1|DR011478 HEAT1_6_A10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_A10_A029 3', mRNA sequence
Length = 600
Score = 58.0 bits (29), Expect = 5e-007
Identities = 146/185 (78%)
Strand = Plus / Plus
Query: 48 gcacctatgattgacaacccagatttcaaggatgatccgtacatttatgcatttgacagc 107
||||| ||||||||||| |||||||| |||||||||||| | |||||| || |||
Sbjct: 13 gcaccaatgattgacaatccagattttaaggatgatccggaactttatgttttccccagt 72
Query: 108 ctgaaatacattggcattgagctgtggcaggttaaatcaggcactttgtttgacaacatc 167
||||||||| | || || || || |||||||| |||||||| || || ||||| |||||
Sbjct: 73 ctgaaatacttaggaatcgaactatggcaggtgaaatcaggaaccttatttgataacatt 132
Query: 168 atcatcactgatgatcctgcgttggccaagacttttgcagaggagacatggggcaagcac 227
| | ||||||||||| || || |||| || ||||||||||||||||| || |||
Sbjct: 133 ttagtatgtgatgatcctgagtatgcgaagaagttggcagaggagacatggggaaaacac 192
Query: 228 aagga 232
|||||
Sbjct: 193 aagga 197
>gb|CF395387.1|CF395387 RTDS2_11_H06.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_H06_A021 3', mRNA sequence
Length = 613
Score = 56.0 bits (28), Expect = 2e-006
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 132 tggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttg 191
|||||||| || ||||| || || ||||| ||||| | ||| |||||||||||| |
Sbjct: 6 tggcaggtcaagtcaggaacattatttgataacattttaatctctgatgatcctgaatat 65
Query: 192 gccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttc 251
||||||| || |||||||| ||||||| ||| |||||||| || || ||| || ||
Sbjct: 66 gccaagaagttagcagaggaaacatgggccaaacacaaggatgccgaaaaggaagccttt 125
Query: 252 gatgaggctgagaaaaagaaggaagaagagga 283
|||||||| ||||||||||| ||||| |||||
Sbjct: 126 gatgaggcagagaaaaagaaagaagaggagga 157
>gb|CD026241.1|CD026241 NXSI_124_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda
cDNA clone NXSI_124_G01 5' similar to Arabidopsis
thaliana sequence At1g09210 putative calcium-binding
protein, calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 117
Score = 54.0 bits (27), Expect = 8e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 48 gcacctatgattgacaacccagatttcaaggatgatccg 86
||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 32 gcaccaatgattgacaatccagattttaaggatgatccg 70
>gb|AI812952.1|AI812952 22G9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 514
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 448 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 507
Query: 68 agattt 73
||||||
Sbjct: 508 agattt 513
>gb|BE662548.1|BE662548 ST87/ST87F06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST87/ST87F06, mRNA sequence
Length = 401
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 276 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 335
Query: 68 agattt 73
||||||
Sbjct: 336 agattt 341
>gb|BG039134.1|BG039134 NXSI_095_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_095_C06 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 279
Score = 52.0 bits (26), Expect = 3e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 8 aaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaaccc 67
||||||||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||
Sbjct: 151 aaagaaaatcaagaatccaaagtacaagggaaaatgggttgcaccaatgattgacaatcc 210
Query: 68 agattt 73
||||||
Sbjct: 211 agattt 216
>gb|CV033612.1|CV033612 RTNACL1_35_C08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_C08_A029 5', mRNA sequence
Length = 573
Score = 50.1 bits (25), Expect = 1e-004
Identities = 145/185 (78%)
Strand = Plus / Minus
Query: 48 gcacctatgattgacaacccagatttcaaggatgatccgtacatttatgcatttgacagc 107
||||| ||||||||||| || ||||| |||||||||||| | |||||| || |||
Sbjct: 548 gcaccaatgattgacaatccggattttaaggatgatccggaactttatgttttccccagt 489
Query: 108 ctgaaatacattggcattgagctgtggcaggttaaatcaggcactttgtttgacaacatc 167
||||||||| | || || || || |||||||| |||||||| || || ||||| |||||
Sbjct: 488 ctgaaatacttaggaatcgaactatggcaggtgaaatcaggaacattatttgataacatt 429
Query: 168 atcatcactgatgatcctgcgttggccaagacttttgcagaggagacatggggcaagcac 227
| | ||||||||||| || || |||| || ||||||||||||||||| || |||
Sbjct: 428 ttagtatgtgatgatcctgagtatgcgaagaagttggcagaggagacatggggaaaacac 369
Query: 228 aagga 232
|||||
Sbjct: 368 aagga 364
>gb|BF518150.1|BF518150 NXSI_035_F06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_F06 5', mRNA sequence
Length = 286
Score = 48.1 bits (24), Expect = 5e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 204 gcagaggagacatggggcaagcacaaggaggcagagaagactgctttcgatgaggctgag 263
|||||||| ||||||| ||| |||||||| || || ||| || || |||||||| |||
Sbjct: 6 gcagaggaaacatgggccaaacacaaggatgccgaaaaggaagcctttgatgaggcagag 65
Query: 264 aaaaagaaggaagaagagga 283
|||||||| ||||| |||||
Sbjct: 66 aaaaagaaagaagaggagga 85
>gb|CF390065.1|CF390065 RTDR2_12_D12.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_D12_A021 3', mRNA
sequence
Length = 563
Score = 48.1 bits (24), Expect = 5e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 204 gcagaggagacatggggcaagcacaaggaggcagagaagactgctttcgatgaggctgag 263
|||||||| ||||||| ||| |||||||| || || ||| || || |||||||| |||
Sbjct: 28 gcagaggaaacatgggccaaacacaaggatgccgaaaaggaagcctttgatgaggcagag 87
Query: 264 aaaaagaaggaagaagagga 283
|||||||| ||||| |||||
Sbjct: 88 aaaaagaaagaagaggagga 107
>gb|DR010814.1|DR010814 HEAT1_1_B02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_B02_A029 5', mRNA sequence
Length = 518
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 39 aaatggaaggcacctatgattgacaacccag 69
||||||| ||||||||||||||||||||||
Sbjct: 445 aaatggaccgcacctatgattgacaacccag 475
>gb|CD016626.1|CD016626 NXCI_040_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_040_C03 5', mRNA sequence
Length = 135
Score = 42.1 bits (21), Expect = 0.031
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 204 gcagaggagacatggggcaagcacaagga 232
||||||||||||||||| || ||||||||
Sbjct: 4 gcagaggagacatggggaaaacacaagga 32
>gb|DR021364.1|DR021364 STRS1_44_D10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_D10_A034 3', mRNA sequence
Length = 580
Score = 42.1 bits (21), Expect = 0.031
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 176 tgatgatcctgcgttggccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||||||| || || |||| || ||||||||||||||||| || ||||||||
Sbjct: 106 tgatgatcctgagtatgcgaagaagttggcagaggagacatggggaaaacacaagga 162
>gb|DR021438.1|DR021438 STRS1_44_D10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_D10_A034 5', mRNA sequence
Length = 372
Score = 42.1 bits (21), Expect = 0.031
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 176 tgatgatcctgcgttggccaagacttttgcagaggagacatggggcaagcacaagga 232
||||||||||| || || |||| || ||||||||||||||||| || ||||||||
Sbjct: 45 tgatgatcctgagtatgcgaagaagttggcagaggagacatggggaaaacacaagga 101
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,370
Number of Sequences: 355925
Number of extensions: 126370
Number of successful extensions: 35589
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35481
Number of HSP's gapped (non-prelim): 96
length of query: 725
length of database: 217,277,237
effective HSP length: 19
effective length of query: 706
effective length of database: 210,514,662
effective search space: 148623351372
effective search space used: 148623351372
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)