BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.36
(834 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO197358.1|CO197358 GEO1_5_F07.g1_A029 Root gravitropism... 242 2e-062
gb|AW011375.1|AW011375 ST20A07 Pine TriplEx shoot tip libra... 184 4e-045
gb|BF777828.1|BF777828 NXSI_076_C08_F NXSI (Nsf Xylem Side ... 184 4e-045
gb|CN784396.1|CN784396 EST783087 Sequencing ESTs from loblo... 184 4e-045
gb|DT625465.1|DT625465 EST1157389 Sequencing ESTs from lobl... 184 4e-045
gb|CR393585.1|CR393585 CR393585 RN Pinus pinaster cDNA clon... 172 1e-041
gb|CN784242.1|CN784242 EST782933 Sequencing ESTs from loblo... 172 1e-041
gb|DR069155.1|DR069155 RTDK1_5_F04.b1_A029 Roots, dark Pinu... 172 1e-041
gb|DR069228.1|DR069228 RTDK1_5_F04.g1_A029 Roots, dark Pinu... 172 1e-041
gb|DT625675.1|DT625675 EST1157599 Sequencing ESTs from lobl... 172 1e-041
gb|CF385410.1|CF385410 RTDR1_3_F08.g1_A015 Loblolly pine ro... 168 2e-040
gb|BX248920.1|BX248920 BX248920 Pinus pinaster differenciat... 165 4e-039
gb|CF401684.1|CF401684 RTWW1_14_A10.b1_A015 Well-watered lo... 165 4e-039
gb|CF402000.1|CF402000 RTWW1_16_E09.g1_A015 Well-watered lo... 163 1e-038
gb|DR092621.1|DR092621 STRR1_2_C09.g1_A033 Stem Response Re... 163 1e-038
gb|BM158100.1|BM158100 NXLV_029_D12_F NXLV (Nsf Xylem Late ... 153 1e-035
gb|AW064884.1|AW064884 ST37A03 Pine TriplEx shoot tip libra... 151 5e-035
gb|AW065072.1|AW065072 ST39C07 Pine TriplEx shoot tip libra... 151 5e-035
gb|BF220721.1|BF220721 NXCI_149_G09_F NXCI (Nsf Xylem Compr... 151 5e-035
gb|AW010420.1|AW010420 ST06F02 Pine TriplEx shoot tip libra... 145 3e-033
gb|AW289620.1|AW289620 NXNV003F01F Nsf Xylem Normal wood Ve... 143 1e-032
gb|CD028214.1|CD028214 NXNV003F01 Nsf Xylem Normal wood Ver... 143 1e-032
gb|DN457285.1|DN457285 EST953084 Sequencing ESTs from loblo... 143 1e-032
gb|DT626741.1|DT626741 EST1159817 Sequencing ESTs from lobl... 143 1e-032
gb|DR091635.1|DR091635 RTAL1_23_A05.b1_A029 Roots plus adde... 141 5e-032
gb|CR392139.1|CR392139 CR392139 RN Pinus pinaster cDNA clon... 139 2e-031
gb|AW225787.1|AW225787 ST71G07 Pine TriplEx shoot tip libra... 137 8e-031
gb|CF389752.1|CF389752 RTDR2_5_D09.b1_A021 Loblolly pine ro... 137 8e-031
gb|CF389780.1|CF389780 RTDR2_5_D09.g1_A021 Loblolly pine ro... 137 8e-031
gb|BX250798.1|BX250798 BX250798 Pinus pinaster differenciat... 135 3e-030
gb|BX677132.1|BX677132 BX677132 RN Pinus pinaster cDNA clon... 135 3e-030
gb|BF010654.1|BF010654 NXCI_087_F06_F NXCI (Nsf Xylem Compr... 133 1e-029
gb|AW290084.1|AW290084 NXNV010B06F Nsf Xylem Normal wood Ve... 131 5e-029
gb|CD026722.1|CD026722 NXNV010B06 Nsf Xylem Normal wood Ver... 131 5e-029
gb|DN464344.1|DN464344 EST960143 Sequencing ESTs from loblo... 131 5e-029
gb|DT627409.1|DT627409 EST1160485 Sequencing ESTs from lobl... 131 5e-029
gb|AW065172.1|AW065172 ST40E09 Pine TriplEx shoot tip libra... 129 2e-028
gb|AW697638.1|AW697638 ST64G07 Pine TriplEx shoot tip libra... 129 2e-028
gb|BF777480.1|BF777480 NXSI_069_A12_F NXSI (Nsf Xylem Side ... 129 2e-028
gb|BE662379.1|BE662379 ST62/ST62E03 Pine TriplEx shoot tip ... 127 8e-028
gb|BE662581.1|BE662581 ST88/ST88B09 Pine TriplEx shoot tip ... 125 3e-027
gb|BF169853.1|BF169853 NXCI_127_B12_F NXCI (Nsf Xylem Compr... 123 1e-026
gb|BG040139.1|BG040139 NXSI_106_G07_F NXSI (Nsf Xylem Side ... 123 1e-026
gb|CF401959.1|CF401959 RTWW1_16_C06.b1_A015 Well-watered lo... 123 1e-026
gb|CF385277.1|CF385277 RTDR1_3_F08.b1_A015 Loblolly pine ro... 121 5e-026
gb|BQ699538.1|BQ699538 NXRV123_E11_F NXRV (Nsf Xylem Root w... 119 2e-025
gb|BQ702716.1|BQ702716 NXSI_131_G04_F NXSI (Nsf Xylem Side ... 119 2e-025
gb|CF396124.1|CF396124 RTDS2_13_B09.g1_A021 Drought-stresse... 119 2e-025
gb|CF399469.1|CF399469 RTDS3_28_H04.g1_A022 Drought-stresse... 119 2e-025
gb|CF471151.1|CF471151 RTDS1_16_H02.g1_A015 Drought-stresse... 119 2e-025
gb|CF471895.1|CF471895 RTDS1_7_D06.b1_A015 Drought-stressed... 119 2e-025
gb|CF471916.1|CF471916 RTDS1_7_D06.g1_A015 Drought-stressed... 119 2e-025
gb|CF472936.1|CF472936 RTDS1_12_C12.g1_A015 Drought-stresse... 119 2e-025
gb|CF664779.1|CF664779 RTCNT1_11_H09.g1_A029 Root control P... 119 2e-025
gb|CF669851.1|CF669851 RTCNT1_46_A09.g1_A029 Root control P... 119 2e-025
gb|CO160167.1|CO160167 FLD1_19_E02.b1_A029 Root flooded Pin... 119 2e-025
gb|CO160239.1|CO160239 FLD1_19_E02.g1_A029 Root flooded Pin... 119 2e-025
gb|CO169339.1|CO169339 NDL1_6_H09.b1_A029 Needles control P... 119 2e-025
gb|CO172781.1|CO172781 NDL1_31_G10.g1_A029 Needles control ... 119 2e-025
gb|CO360875.1|CO360875 NDL2_1_E01.b1_A029 Needles control 2... 119 2e-025
gb|CO360958.1|CO360958 NDL2_1_E01.g1_A029 Needles control 2... 119 2e-025
gb|CO363381.1|CO363381 RTK1_9_H12.b1_A029 Roots minus potas... 119 2e-025
gb|CO363471.1|CO363471 RTK1_9_H12.g1_A029 Roots minus potas... 119 2e-025
gb|DR023289.1|DR023289 STRS1_56_D06.g1_A034 Shoot tip pitch... 119 2e-025
gb|DR025561.1|DR025561 STRS1_72_H04.b1_A034 Shoot tip pitch... 119 2e-025
gb|DR025642.1|DR025642 STRS1_72_H04.g1_A034 Shoot tip pitch... 119 2e-025
gb|DR058000.1|DR058000 RTNIT1_9_C03.b1_A029 Roots minus nit... 119 2e-025
gb|DR058073.1|DR058073 RTNIT1_9_C03.g1_A029 Roots minus nit... 119 2e-025
gb|DR058784.1|DR058784 RTNIT1_13_G11.g1_A029 Roots minus ni... 119 2e-025
gb|DR070203.1|DR070203 RTDK1_11_H12.g1_A029 Roots, dark Pin... 119 2e-025
gb|DR072572.1|DR072572 RTDK1_27_E07.b1_A029 Roots, dark Pin... 119 2e-025
gb|DR109586.1|DR109586 RTS1_3_G01.b1_A029 Roots minus sulfu... 119 2e-025
gb|DR118131.1|DR118131 RTMG1_11_G12.b1_A029 Roots minus mag... 119 2e-025
gb|DR118213.1|DR118213 RTMG1_11_G12.g1_A029 Roots minus mag... 119 2e-025
gb|DR165996.1|DR165996 RTPHOS1_8_D07.g1_A029 Roots minus ph... 119 2e-025
gb|DR177381.1|DR177381 RTMNUT1_5_B06.b1_A029 Roots minus mi... 119 2e-025
gb|DR177468.1|DR177468 RTMNUT1_5_B06.g1_A029 Roots minus mi... 119 2e-025
gb|DR745074.1|DR745074 RTCU1_26_G09.g1_A029 Roots plus adde... 119 2e-025
gb|DR745235.1|DR745235 RTCU1_28_A12.b1_A029 Roots plus adde... 119 2e-025
gb|DR745327.1|DR745327 RTCU1_28_C08.g1_A029 Roots plus adde... 119 2e-025
gb|AW056678.1|AW056678 ST54E02 Pine TriplEx shoot tip libra... 117 8e-025
gb|AW225739.1|AW225739 ST71C05 Pine TriplEx shoot tip libra... 117 8e-025
gb|CV134558.1|CV134558 EST845767 Sequencing ESTs from loblo... 117 8e-025
gb|DN451020.1|DN451020 EST946819 Sequencing ESTs from loblo... 117 8e-025
gb|DR069415.1|DR069415 RTDK1_7_D10.b1_A029 Roots, dark Pinu... 117 8e-025
gb|DR069505.1|DR069505 RTDK1_7_D10.g1_A029 Roots, dark Pinu... 117 8e-025
gb|DT625983.1|DT625983 EST1157907 Sequencing ESTs from lobl... 117 8e-025
gb|DT625255.1|DT625255 EST1159530 Sequencing ESTs from lobl... 117 8e-025
gb|AW010408.1|AW010408 ST06E01 Pine TriplEx shoot tip libra... 115 3e-024
gb|CV138577.1|CV138577 EST849786 Sequencing ESTs from loblo... 115 3e-024
gb|DT624347.1|DT624347 EST1158622 Sequencing ESTs from lobl... 115 3e-024
gb|BM492470.1|BM492470 NXRV_025_G07_F NXRV (Nsf Xylem Root ... 113 1e-023
gb|BX678643.1|BX678643 BX678643 RS Pinus pinaster cDNA clon... 113 1e-023
gb|BX680729.1|BX680729 BX680729 RS Pinus pinaster cDNA clon... 113 1e-023
gb|BX681371.1|BX681371 BX681371 RS Pinus pinaster cDNA clon... 113 1e-023
gb|AW065136.1|AW065136 ST40B01 Pine TriplEx shoot tip libra... 111 5e-023
gb|BQ106828.1|BQ106828 NXLV089_G10_F NXLV (Nsf Xylem Late w... 111 5e-023
gb|CO163557.1|CO163557 FLD1_42_H06.b1_A029 Root flooded Pin... 111 5e-023
gb|CV136856.1|CV136856 EST848065 Sequencing ESTs from loblo... 111 5e-023
gb|CV139215.1|CV139215 EST850424 Sequencing ESTs from loblo... 111 5e-023
gb|DN447165.1|DN447165 EST942964 Sequencing ESTs from loblo... 111 5e-023
gb|DR058428.1|DR058428 RTNIT1_11_F01.g1_A029 Roots minus ni... 111 5e-023
gb|DT624351.1|DT624351 EST1158626 Sequencing ESTs from lobl... 111 5e-023
gb|CF401407.1|CF401407 RTWW1_12_A04.b1_A015 Well-watered lo... 109 2e-022
gb|DR179115.1|DR179115 RTMNUT1_16_C08.b1_A029 Roots minus m... 109 2e-022
gb|AW226258.1|AW226258 ST80C07 Pine TriplEx shoot tip libra... 105 3e-021
gb|AL750111.1|AL750111 AL750111 AS Pinus pinaster cDNA clon... 105 3e-021
gb|CR394265.1|CR394265 CR394265 RN Pinus pinaster cDNA clon... 103 1e-020
gb|CV143342.1|CV143342 EST854551 Sequencing ESTs from loblo... 103 1e-020
gb|CV144396.1|CV144396 EST855605 Sequencing ESTs from loblo... 103 1e-020
gb|DT624787.1|DT624787 EST1158882 Sequencing ESTs from lobl... 103 1e-020
gb|DT624676.1|DT624676 EST1159011 Sequencing ESTs from lobl... 103 1e-020
gb|BF010707.1|BF010707 NXCI_066_E05_F NXCI (Nsf Xylem Compr... 101 4e-020
gb|CF402634.1|CF402634 RTWW1_21_G01.g1_A015 Well-watered lo... 101 4e-020
gb|CF476181.1|CF476181 RTWW2_21_F01.g1_A021 Well-watered lo... 100 2e-019
gb|AI812946.1|AI812946 22G3 Pine Lambda Zap Xylem library P... 98 7e-019
gb|AI813204.1|AI813204 3B3 Pine Lambda Zap Xylem library Pi... 98 7e-019
gb|AW043062.1|AW043062 ST28H01 Pine TriplEx shoot tip libra... 98 7e-019
gb|BX253787.1|BX253787 BX253787 Pinus pinaster differenciat... 98 7e-019
gb|BG275404.1|BG275404 NXSI_141_E07_F NXSI (Nsf Xylem Side ... 98 7e-019
gb|BQ701779.1|BQ701779 NXSI_120_E03_F NXSI (Nsf Xylem Side ... 98 7e-019
gb|BQ701931.1|BQ701931 NXSI_122_C11_F NXSI (Nsf Xylem Side ... 98 7e-019
gb|BQ702790.1|BQ702790 NXSI_132_F10_F NXSI (Nsf Xylem Side ... 98 7e-019
gb|CF392269.1|CF392269 RTDR3_7_E10.b1_A022 Loblolly pine ro... 98 7e-019
gb|CF471329.1|CF471329 RTDS1_2_D02.g1_A015 Drought-stressed... 98 7e-019
gb|CF471440.1|CF471440 RTDS1_3_E02.g1_A015 Drought-stressed... 98 7e-019
gb|CF472315.1|CF472315 RTDS1_9_D11.b1_A015 Drought-stressed... 98 7e-019
gb|CF472451.1|CF472451 RTDS1_9_D11.g1_A015 Drought-stressed... 98 7e-019
gb|CF665152.1|CF665152 RTCNT1_14_F07.b1_A029 Root control P... 98 7e-019
gb|CF665237.1|CF665237 RTCNT1_14_F07.g1_A029 Root control P... 98 7e-019
gb|CF666464.1|CF666464 RTCNT1_23_B03.g1_A029 Root control P... 98 7e-019
gb|BX680439.1|BX680439 BX680439 RS Pinus pinaster cDNA clon... 98 7e-019
gb|BX682601.1|BX682601 BX682601 Pinus pinaster differenciat... 98 7e-019
gb|CR393263.1|CR393263 CR393263 RN Pinus pinaster cDNA clon... 98 7e-019
gb|CN783779.1|CN783779 EST782470 Sequencing ESTs from loblo... 98 7e-019
gb|CN783906.1|CN783906 EST782597 Sequencing ESTs from loblo... 98 7e-019
gb|CN784785.1|CN784785 EST783476 Sequencing ESTs from loblo... 98 7e-019
gb|CN784879.1|CN784879 EST783570 Sequencing ESTs from loblo... 98 7e-019
gb|CN784966.1|CN784966 EST783657 Sequencing ESTs from loblo... 98 7e-019
gb|CN785496.1|CN785496 EST784187 Sequencing ESTs from loblo... 98 7e-019
gb|CN785769.1|CN785769 EST784460 Sequencing ESTs from loblo... 98 7e-019
gb|CO164142.1|CO164142 FLD1_46_C11.b1_A029 Root flooded Pin... 98 7e-019
gb|CO164451.1|CO164451 FLD1_48_C11.b1_A029 Root flooded Pin... 98 7e-019
gb|CO166753.1|CO166753 FLD1_64_F07.b1_A029 Root flooded Pin... 98 7e-019
gb|CO173989.1|CO173989 NDL1_41_A09.b1_A029 Needles control ... 98 7e-019
gb|CO175036.1|CO175036 NDL1_48_A02.b1_A029 Needles control ... 98 7e-019
gb|CO409530.1|CO409530 EST839915 Sequencing ESTs from loblo... 98 7e-019
gb|CO410538.1|CO410538 EST840923 Sequencing ESTs from loblo... 98 7e-019
gb|CO412314.1|CO412314 EST842699 Sequencing ESTs from loblo... 98 7e-019
gb|CO412506.1|CO412506 EST842891 Sequencing ESTs from loblo... 98 7e-019
gb|CV035798.1|CV035798 RTNACL1_42_B06.g1_A029 Roots plus ad... 98 7e-019
gb|CV134433.1|CV134433 EST845642 Sequencing ESTs from loblo... 98 7e-019
gb|CV134633.1|CV134633 EST845842 Sequencing ESTs from loblo... 98 7e-019
gb|CV135150.1|CV135150 EST846359 Sequencing ESTs from loblo... 98 7e-019
gb|CV135502.1|CV135502 EST846711 Sequencing ESTs from loblo... 98 7e-019
gb|CV136426.1|CV136426 EST847635 Sequencing ESTs from loblo... 98 7e-019
gb|CV137402.1|CV137402 EST848611 Sequencing ESTs from loblo... 98 7e-019
gb|CV137440.1|CV137440 EST848649 Sequencing ESTs from loblo... 98 7e-019
gb|CV137443.1|CV137443 EST848652 Sequencing ESTs from loblo... 98 7e-019
gb|CV137801.1|CV137801 EST849010 Sequencing ESTs from loblo... 98 7e-019
gb|CV137892.1|CV137892 EST849101 Sequencing ESTs from loblo... 98 7e-019
gb|CV138460.1|CV138460 EST849669 Sequencing ESTs from loblo... 98 7e-019
gb|CV138518.1|CV138518 EST849727 Sequencing ESTs from loblo... 98 7e-019
gb|CV138579.1|CV138579 EST849788 Sequencing ESTs from loblo... 98 7e-019
gb|CV138864.1|CV138864 EST850073 Sequencing ESTs from loblo... 98 7e-019
gb|CV138909.1|CV138909 EST850118 Sequencing ESTs from loblo... 98 7e-019
gb|CV138921.1|CV138921 EST850130 Sequencing ESTs from loblo... 98 7e-019
gb|CV139023.1|CV139023 EST850232 Sequencing ESTs from loblo... 98 7e-019
gb|CV139082.1|CV139082 EST850291 Sequencing ESTs from loblo... 98 7e-019
gb|CV143238.1|CV143238 EST854447 Sequencing ESTs from loblo... 98 7e-019
gb|CV143441.1|CV143441 EST854650 Sequencing ESTs from loblo... 98 7e-019
gb|CV144297.1|CV144297 EST855506 Sequencing ESTs from loblo... 98 7e-019
gb|CV144335.1|CV144335 EST855544 Sequencing ESTs from loblo... 98 7e-019
gb|CV144493.1|CV144493 EST855702 Sequencing ESTs from loblo... 98 7e-019
gb|CV144552.1|CV144552 EST855761 Sequencing ESTs from loblo... 98 7e-019
gb|CV144900.1|CV144900 EST856109 Sequencing ESTs from loblo... 98 7e-019
gb|CV145741.1|CV145741 EST856950 Sequencing ESTs from loblo... 98 7e-019
gb|CV146007.1|CV146007 EST857216 Sequencing ESTs from loblo... 98 7e-019
gb|CV146161.1|CV146161 EST857370 Sequencing ESTs from loblo... 98 7e-019
gb|CV146259.1|CV146259 EST857468 Sequencing ESTs from loblo... 98 7e-019
gb|CV146483.1|CV146483 EST857692 Sequencing ESTs from loblo... 98 7e-019
gb|CV146520.1|CV146520 EST857729 Sequencing ESTs from loblo... 98 7e-019
gb|CV147086.1|CV147086 EST858295 Sequencing ESTs from loblo... 98 7e-019
gb|CV147334.1|CV147334 EST858543 Sequencing ESTs from loblo... 98 7e-019
gb|CV147468.1|CV147468 EST858677 Sequencing ESTs from loblo... 98 7e-019
gb|CV147709.1|CV147709 EST858918 Sequencing ESTs from loblo... 98 7e-019
gb|CX714649.1|CX714649 RTPQ1_24_G11.b1_A032 Roots treated w... 98 7e-019
gb|CX714692.1|CX714692 RTPQ1_24_G11.g1_A032 Roots treated w... 98 7e-019
gb|DN445929.1|DN445929 EST941728 Sequencing ESTs from loblo... 98 7e-019
gb|DN446269.1|DN446269 EST942068 Sequencing ESTs from loblo... 98 7e-019
gb|DN446700.1|DN446700 EST942499 Sequencing ESTs from loblo... 98 7e-019
gb|DN447309.1|DN447309 EST943108 Sequencing ESTs from loblo... 98 7e-019
gb|DN448547.1|DN448547 EST944346 Sequencing ESTs from loblo... 98 7e-019
gb|DN448654.1|DN448654 EST944453 Sequencing ESTs from loblo... 98 7e-019
gb|DN448660.1|DN448660 EST944459 Sequencing ESTs from loblo... 98 7e-019
gb|DN448802.1|DN448802 EST944601 Sequencing ESTs from loblo... 98 7e-019
gb|DN450374.1|DN450374 EST946173 Sequencing ESTs from loblo... 98 7e-019
gb|DN450421.1|DN450421 EST946220 Sequencing ESTs from loblo... 98 7e-019
gb|DN450577.1|DN450577 EST946376 Sequencing ESTs from loblo... 98 7e-019
gb|DN450845.1|DN450845 EST946644 Sequencing ESTs from loblo... 98 7e-019
gb|DN452452.1|DN452452 EST948251 Sequencing ESTs from loblo... 98 7e-019
gb|DN452840.1|DN452840 EST948639 Sequencing ESTs from loblo... 98 7e-019
gb|DN453901.1|DN453901 EST949700 Sequencing ESTs from loblo... 98 7e-019
gb|DN454552.1|DN454552 EST950351 Sequencing ESTs from loblo... 98 7e-019
gb|DN455327.1|DN455327 EST951126 Sequencing ESTs from loblo... 98 7e-019
gb|DN455498.1|DN455498 EST951297 Sequencing ESTs from loblo... 98 7e-019
gb|DN455761.1|DN455761 EST951560 Sequencing ESTs from loblo... 98 7e-019
gb|DN455790.1|DN455790 EST951589 Sequencing ESTs from loblo... 98 7e-019
gb|DN456009.1|DN456009 EST951808 Sequencing ESTs from loblo... 98 7e-019
gb|DN456053.1|DN456053 EST951852 Sequencing ESTs from loblo... 98 7e-019
gb|DN456245.1|DN456245 EST952044 Sequencing ESTs from loblo... 98 7e-019
gb|DN456308.1|DN456308 EST952107 Sequencing ESTs from loblo... 98 7e-019
gb|DN457003.1|DN457003 EST952802 Sequencing ESTs from loblo... 98 7e-019
gb|DN457034.1|DN457034 EST952833 Sequencing ESTs from loblo... 98 7e-019
gb|DN457338.1|DN457338 EST953137 Sequencing ESTs from loblo... 98 7e-019
gb|DN457773.1|DN457773 EST953572 Sequencing ESTs from loblo... 98 7e-019
gb|DN457980.1|DN457980 EST953779 Sequencing ESTs from loblo... 98 7e-019
gb|DN457991.1|DN457991 EST953790 Sequencing ESTs from loblo... 98 7e-019
gb|DN458434.1|DN458434 EST954233 Sequencing ESTs from loblo... 98 7e-019
gb|DN459477.1|DN459477 EST955276 Sequencing ESTs from loblo... 98 7e-019
gb|DN459496.1|DN459496 EST955295 Sequencing ESTs from loblo... 98 7e-019
gb|DN459534.1|DN459534 EST955333 Sequencing ESTs from loblo... 98 7e-019
gb|DN460195.1|DN460195 EST955994 Sequencing ESTs from loblo... 98 7e-019
gb|DN460262.1|DN460262 EST956061 Sequencing ESTs from loblo... 98 7e-019
gb|DN460558.1|DN460558 EST956357 Sequencing ESTs from loblo... 98 7e-019
gb|DN460577.1|DN460577 EST956376 Sequencing ESTs from loblo... 98 7e-019
gb|DN461279.1|DN461279 EST957078 Sequencing ESTs from loblo... 98 7e-019
gb|DN461663.1|DN461663 EST957462 Sequencing ESTs from loblo... 98 7e-019
gb|DN461861.1|DN461861 EST957660 Sequencing ESTs from loblo... 98 7e-019
gb|DN462022.1|DN462022 EST957821 Sequencing ESTs from loblo... 98 7e-019
gb|DN462420.1|DN462420 EST958219 Sequencing ESTs from loblo... 98 7e-019
gb|DN462698.1|DN462698 EST958497 Sequencing ESTs from loblo... 98 7e-019
gb|DN463445.1|DN463445 EST959244 Sequencing ESTs from loblo... 98 7e-019
gb|DN463622.1|DN463622 EST959421 Sequencing ESTs from loblo... 98 7e-019
gb|DN463625.1|DN463625 EST959424 Sequencing ESTs from loblo... 98 7e-019
gb|DN463639.1|DN463639 EST959438 Sequencing ESTs from loblo... 98 7e-019
gb|DN463734.1|DN463734 EST959533 Sequencing ESTs from loblo... 98 7e-019
gb|DN464270.1|DN464270 EST960069 Sequencing ESTs from loblo... 98 7e-019
gb|DN464365.1|DN464365 EST960164 Sequencing ESTs from loblo... 98 7e-019
gb|DN465312.1|DN465312 EST961111 Sequencing ESTs from loblo... 98 7e-019
gb|DR011500.1|DR011500 HEAT1_6_C11.b1_A029 Root at 37 C for... 98 7e-019
gb|DR011580.1|DR011580 HEAT1_6_C11.g1_A029 Root at 37 C for... 98 7e-019
gb|DR015037.1|DR015037 STRS1_1_D03.b1_A034 Shoot tip pitch ... 98 7e-019
gb|DR019676.1|DR019676 STRS1_31_D11.g1_A034 Shoot tip pitch... 98 7e-019
gb|DR021832.1|DR021832 STRS1_47_E06.b1_A034 Shoot tip pitch... 98 7e-019
gb|DR021917.1|DR021917 STRS1_47_E06.g1_A034 Shoot tip pitch... 98 7e-019
gb|DR048186.1|DR048186 RTBOR1_7_D09.b2_A029 Roots plus adde... 98 7e-019
gb|DR048270.1|DR048270 RTBOR1_7_D09.g2_A029 Roots plus adde... 98 7e-019
gb|DR050256.1|DR050256 RTBOR1_22_F10.b1_A029 Roots plus add... 98 7e-019
gb|DR050335.1|DR050335 RTBOR1_22_F10.g1_A029 Roots plus add... 98 7e-019
gb|DR056830.1|DR056830 RTCA1_32_G04.g1_A029 Roots minus cal... 98 7e-019
gb|DR068857.1|DR068857 RTDK1_3_G04.b1_A029 Roots, dark Pinu... 98 7e-019
gb|DR068945.1|DR068945 RTDK1_3_G04.g1_A029 Roots, dark Pinu... 98 7e-019
gb|DR091541.1|DR091541 RTAL1_22_G12.b1_A029 Roots plus adde... 98 7e-019
gb|DR092992.1|DR092992 STRR1_5_H02.b1_A033 Stem Response Re... 98 7e-019
gb|DR093075.1|DR093075 STRR1_5_H02.g1_A033 Stem Response Re... 98 7e-019
gb|DR099177.1|DR099177 STRR1_53_E01.g1_A033 Stem Response R... 98 7e-019
gb|DR102243.1|DR102243 STRR1_79_C11.g1_A033 Stem Response R... 98 7e-019
gb|DR110890.1|DR110890 RTS1_13_F12.g1_A029 Roots minus sulf... 98 7e-019
gb|DR117398.1|DR117398 RTMG1_6_F01.g1_A029 Roots minus magn... 98 7e-019
gb|DR384298.1|DR384298 RTHG1_1_G10.b1_A029 Roots plus added... 98 7e-019
gb|DR384379.1|DR384379 RTHG1_1_G10.g1_A029 Roots plus added... 98 7e-019
gb|DR388613.1|DR388613 RTHG1_29_H07.b1_A029 Roots plus adde... 98 7e-019
gb|DR743325.1|DR743325 RTCU1_15_C11.b1_A029 Roots plus adde... 98 7e-019
gb|DR743398.1|DR743398 RTCU1_15_C11.g1_A029 Roots plus adde... 98 7e-019
gb|DT625195.1|DT625195 EST1159470 Sequencing ESTs from lobl... 98 7e-019
gb|AI725271.1|AI725271 1137 PtIFG2 Pinus taeda cDNA clone 9... 96 3e-018
gb|AW226318.1|AW226318 ST81A05 Pine TriplEx shoot tip libra... 96 3e-018
gb|BE662587.1|BE662587 ST88/ST88C07 Pine TriplEx shoot tip ... 96 3e-018
gb|CF472570.1|CF472570 RTDS1_10_E06.g1_A015 Drought-stresse... 96 3e-018
gb|DR169332.1|DR169332 RTPHOS1_31_D09.g1_A029 Roots minus p... 96 3e-018
gb|AW042846.1|AW042846 ST26B05 Pine TriplEx shoot tip libra... 94 1e-017
gb|AW754871.1|AW754871 PC06E10 Pine TriplEx pollen cone lib... 94 1e-017
gb|CV136375.1|CV136375 EST847584 Sequencing ESTs from loblo... 94 1e-017
gb|DR022331.1|DR022331 STRS1_50_H03.b1_A034 Shoot tip pitch... 94 1e-017
gb|BE662521.1|BE662521 ST87/ST87C04 Pine TriplEx shoot tip ... 92 4e-017
gb|CF664694.1|CF664694 RTCNT1_11_H09.b1_A029 Root control P... 90 2e-016
gb|CF667040.1|CF667040 RTCNT1_27_G06.g1_A029 Root control P... 90 2e-016
gb|CO162869.1|CO162869 FLD1_38_B03.b1_A029 Root flooded Pin... 90 2e-016
gb|CO166822.1|CO166822 FLD1_64_F07.g1_A029 Root flooded Pin... 90 2e-016
gb|CO370315.1|CO370315 RTK1_67_C09.b1_A029 Roots minus pota... 90 2e-016
gb|CO370391.1|CO370391 RTK1_67_C09.g1_A029 Roots minus pota... 90 2e-016
gb|CX650772.1|CX650772 COLD1_48_B04.b1_A029 Root cold Pinus... 90 2e-016
gb|CX715938.1|CX715938 RTPQ1_38_A10.g1_A032 Roots treated w... 90 2e-016
gb|DR092808.1|DR092808 STRR1_4_D04.b1_A033 Stem Response Re... 90 2e-016
gb|DR092879.1|DR092879 STRR1_4_D04.g1_A033 Stem Response Re... 90 2e-016
gb|DR102179.1|DR102179 STRR1_79_C11.b1_A033 Stem Response R... 90 2e-016
gb|DR386755.1|DR386755 RTHG1_17_F06.b1_A029 Roots plus adde... 90 2e-016
gb|DR386840.1|DR386840 RTHG1_17_F06.g1_A029 Roots plus adde... 90 2e-016
gb|DR386922.1|DR386922 RTHG1_18_F06.b1_A029 Roots plus adde... 90 2e-016
gb|BG039061.1|BG039061 NXSI_092_C07_F NXSI (Nsf Xylem Side ... 88 7e-016
gb|CF399383.1|CF399383 RTDS3_28_H04.b1_A022 Drought-stresse... 88 7e-016
gb|CF471022.1|CF471022 RTDS1_16_H02.b1_A015 Drought-stresse... 88 7e-016
gb|CO172697.1|CO172697 NDL1_31_G10.b1_A029 Needles control ... 88 7e-016
gb|CX714755.1|CX714755 RTPQ1_26_H04.b1_A032 Roots treated w... 88 7e-016
gb|DR022408.1|DR022408 STRS1_50_H03.g1_A034 Shoot tip pitch... 88 7e-016
gb|DR745251.1|DR745251 RTCU1_28_C08.b1_A029 Roots plus adde... 88 7e-016
gb|BE643889.1|BE643889 NXCI_048_F06_F NXCI (Nsf Xylem Compr... 86 3e-015
gb|BQ702055.1|BQ702055 NXSI_123_H01_F NXSI (Nsf Xylem Side ... 86 3e-015
gb|BX681072.1|BX681072 BX681072 RS Pinus pinaster cDNA clon... 86 3e-015
gb|AW064900.1|AW064900 ST37B11 Pine TriplEx shoot tip libra... 84 1e-014
gb|BF609010.1|BF609010 NXSI_039_D02_F NXSI (Nsf Xylem Side ... 84 1e-014
gb|BX680752.1|BX680752 BX680752 RS Pinus pinaster cDNA clon... 84 1e-014
gb|BX681637.1|BX681637 BX681637 RS Pinus pinaster cDNA clon... 84 1e-014
gb|DR166057.1|DR166057 RTPHOS1_9_C02.b2_A029 Roots minus ph... 84 1e-014
gb|CF471224.1|CF471224 RTDS1_2_D02.b1_A015 Drought-stressed... 82 4e-014
gb|BX784371.1|BX784371 BX784371 Pinus pinaster differenciat... 82 4e-014
gb|CO159195.1|CO159195 FLD1_12_C08.b1_A029 Root flooded Pin... 82 4e-014
gb|CO159273.1|CO159273 FLD1_12_C08.g1_A029 Root flooded Pin... 82 4e-014
gb|AA739979.1|AA739979 744 PtIFG2 Pinus taeda cDNA clone 91... 80 2e-013
gb|AW497822.1|AW497822 PC02F09 Pine TriplEx pollen cone lib... 80 2e-013
gb|AW697547.1|AW697547 ST64C04 Pine TriplEx shoot tip libra... 80 2e-013
gb|AW981727.1|AW981727 PC18A02 Pine TriplEx pollen cone lib... 80 2e-013
gb|BE458165.1|BE458165 NXCI_008_D01_F NXCI (Nsf Xylem Compr... 80 2e-013
gb|BE582216.1|BE582216 NXCI_026_E02_F NXCI (Nsf Xylem Compr... 80 2e-013
gb|BE582266.1|BE582266 NXCI_031_B12_F NXCI (Nsf Xylem Compr... 80 2e-013
gb|BE657032.1|BE657032 NXCI_046_F09_F NXCI (Nsf Xylem Compr... 80 2e-013
gb|BF169503.1|BF169503 NXCI_120_C10_F NXCI (Nsf Xylem Compr... 80 2e-013
gb|BF609473.1|BF609473 NXSI_043_A05_F NXSI (Nsf Xylem Side ... 80 2e-013
gb|BQ107406.1|BQ107406 NXLV091_C11_F NXLV (Nsf Xylem Late w... 80 2e-013
gb|BQ291206.1|BQ291206 NXRV057_C07_F NXRV (Nsf Xylem Root w... 80 2e-013
gb|CF387593.1|CF387593 RTDR1_20_D11.g1_A015 Loblolly pine r... 80 2e-013
gb|CX651321.1|CX651321 COLD1_51_C07.g1_A029 Root cold Pinus... 80 2e-013
gb|DN633940.1|DN633940 EST984756 Subtracted pine embryo lib... 80 2e-013
gb|DR011383.1|DR011383 HEAT1_5_H08.b1_A029 Root at 37 C for... 80 2e-013
gb|DR058340.1|DR058340 RTNIT1_11_F01.b1_A029 Roots minus ni... 80 2e-013
gb|AA556824.1|AA556824 666 Loblolly pine C Pinus taeda cDNA... 76 3e-012
gb|BM428093.1|BM428093 NXRV_008_F07_F NXRV (Nsf Xylem Root ... 76 3e-012
gb|BQ701277.1|BQ701277 NXSI_061_F08_F NXSI (Nsf Xylem Side ... 76 3e-012
gb|CV138302.1|CV138302 EST849511 Sequencing ESTs from loblo... 76 3e-012
gb|BE644062.1|BE644062 NXCI_054_B03_F NXCI (Nsf Xylem Compr... 74 1e-011
gb|BF610393.1|BF610393 NXSI_058_A06_F NXSI (Nsf Xylem Side ... 74 1e-011
gb|BG039068.1|BG039068 NXSI_092_D05_F NXSI (Nsf Xylem Side ... 74 1e-011
gb|BQ702285.1|BQ702285 NXSI_127_A04_F NXSI (Nsf Xylem Side ... 74 1e-011
gb|CF401454.1|CF401454 RTWW1_12_A04.g1_A015 Well-watered lo... 74 1e-011
gb|CF476135.1|CF476135 RTWW2_21_F01.b1_A021 Well-watered lo... 74 1e-011
gb|CF669772.1|CF669772 RTCNT1_46_A09.b1_A029 Root control P... 74 1e-011
gb|DR072650.1|DR072650 RTDK1_27_E07.g1_A029 Roots, dark Pin... 74 1e-011
gb|BF517390.1|BF517390 NXSI_013_H12_F NXSI (Nsf Xylem Side ... 72 4e-011
gb|DR012164.1|DR012164 HEAT1_10_D10.g1_A029 Root at 37 C fo... 70 2e-010
gb|DR117313.1|DR117313 RTMG1_6_F01.b1_A029 Roots minus magn... 70 2e-010
gb|DR166116.1|DR166116 RTPHOS1_9_C02.g2_A029 Roots minus ph... 70 2e-010
gb|AA739804.1|AA739804 569 PtIFG2 Pinus taeda cDNA clone 89... 68 6e-010
gb|AI725085.1|AI725085 984 PtIFG2 Pinus taeda cDNA clone 89... 68 6e-010
gb|AW290201.1|AW290201 NXNV015C05F Nsf Xylem Normal wood Ve... 68 6e-010
gb|BE662387.1|BE662387 ST62/ST62F06 Pine TriplEx shoot tip ... 68 6e-010
gb|BE451994.1|BE451994 NXCI_007_B10_F NXCI (Nsf Xylem Compr... 68 6e-010
gb|CD026844.1|CD026844 NXNV015C05 Nsf Xylem Normal wood Ver... 68 6e-010
gb|CF470841.1|CF470841 RTDS1_15_D10.b1_A015 Drought-stresse... 68 6e-010
gb|CF470956.1|CF470956 RTDS1_15_D10.g1_A015 Drought-stresse... 68 6e-010
gb|CO169153.1|CO169153 NDL1_5_B05.b1_A029 Needles control P... 68 6e-010
gb|DR011991.1|DR011991 HEAT1_9_G11.b1_A029 Root at 37 C for... 68 6e-010
gb|DR071666.1|DR071666 RTDK1_21_H04.b1_A029 Roots, dark Pin... 68 6e-010
gb|DR071751.1|DR071751 RTDK1_21_H04.g1_A029 Roots, dark Pin... 68 6e-010
gb|DR077964.1|DR077964 RTFEPL1_1_C06.b1_A029 Roots plus add... 68 6e-010
gb|DR078042.1|DR078042 RTFEPL1_1_C06.g1_A029 Roots plus add... 68 6e-010
gb|AL750656.1|AL750656 AL750656 RN Pinus pinaster cDNA clon... 66 2e-009
gb|BX253571.1|BX253571 BX253571 Pinus pinaster differenciat... 66 2e-009
gb|BF517618.1|BF517618 NXSI_026_H12_F NXSI (Nsf Xylem Side ... 66 2e-009
gb|DN627805.1|DN627805 EST978621 Subtracted pine embryo lib... 66 2e-009
gb|DN630455.1|DN630455 EST981271 Subtracted pine embryo lib... 66 2e-009
gb|DN630608.1|DN630608 EST981424 Subtracted pine embryo lib... 66 2e-009
gb|DT629741.1|DT629741 EST1154153 Subtracted pine embryo li... 66 2e-009
gb|DT630184.1|DT630184 EST1154596 Subtracted pine embryo li... 66 2e-009
gb|DT630294.1|DT630294 EST1154706 Subtracted pine embryo li... 66 2e-009
emb|AJ306723.1|PPI306723 Pinus pinaster mRNA for putative h... 66 2e-009
gb|AW754794.1|AW754794 PC08A06 Pine TriplEx pollen cone lib... 64 1e-008
gb|BG276008.1|BG276008 NXSI_147_E01_F NXSI (Nsf Xylem Side ... 62 4e-008
gb|CD025925.1|CD025925 NXSI_087_A04_F NXSI (Nsf Xylem Side ... 62 4e-008
gb|CO164522.1|CO164522 FLD1_48_C11.g1_A029 Root flooded Pin... 62 4e-008
gb|CD020842.1|CD020842 NXNV_091_D10_F Nsf Xylem Normal wood... 60 2e-007
gb|BX677957.1|BX677957 BX677957 RN Pinus pinaster cDNA clon... 60 2e-007
gb|CF387455.1|CF387455 RTDR1_20_D11.b1_A015 Loblolly pine r... 58 6e-007
gb|CX650466.1|CX650466 COLD1_45_H02.g1_A029 Root cold Pinus... 58 6e-007
gb|DR745310.1|DR745310 RTCU1_28_A12.g1_A029 Roots plus adde... 58 6e-007
gb|CD016204.1|CD016204 NXCI_029_G02_F NXCI (Nsf Xylem Compr... 56 2e-006
gb|CO366585.1|CO366585 RTK1_28_F03.g1_A029 Roots minus pota... 56 2e-006
gb|CX647714.1|CX647714 COLD1_19_A09.g1_A029 Root cold Pinus... 56 2e-006
gb|AW042644.1|AW042644 ST24C09 Pine TriplEx shoot tip libra... 54 9e-006
gb|CX650389.1|CX650389 COLD1_45_H02.b1_A029 Root cold Pinus... 54 9e-006
gb|CX651239.1|CX651239 COLD1_51_C07.b1_A029 Root cold Pinus... 54 9e-006
gb|CX651454.1|CX651454 COLD1_52_B07.g1_A029 Root cold Pinus... 54 9e-006
gb|CX715909.1|CX715909 RTPQ1_38_A10.b1_A032 Roots treated w... 54 9e-006
gb|DN464951.1|DN464951 EST960750 Sequencing ESTs from loblo... 54 9e-006
gb|DR166576.1|DR166576 RTPHOS1_13_A09.b1_A029 Roots minus p... 54 9e-006
gb|DR385988.1|DR385988 RTHG1_12_D07.b1_A029 Roots plus adde... 54 9e-006
gb|DR386054.1|DR386054 RTHG1_12_D07.g1_A029 Roots plus adde... 54 9e-006
gb|BX681121.1|BX681121 BX681121 RS Pinus pinaster cDNA clon... 52 4e-005
gb|AA739708.1|AA739708 473 PtIFG2 Pinus taeda cDNA clone 87... 50 1e-004
gb|AW010703.1|AW010703 ST11B10 Pine TriplEx shoot tip libra... 50 1e-004
gb|AW985240.1|AW985240 NXNV_132_H01_F Nsf Xylem Normal wood... 50 1e-004
gb|BF516758.1|BF516758 NXSI_003_A01_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|CF471358.1|CF471358 RTDS1_3_E02.b1_A015 Drought-stressed... 50 1e-004
gb|DR011034.1|DR011034 HEAT1_3_A02.b1_A029 Root at 37 C for... 50 1e-004
gb|DR056752.1|DR056752 RTCA1_32_G04.b1_A029 Roots minus cal... 50 1e-004
gb|AW985103.1|AW985103 NXNV_133_A04_F Nsf Xylem Normal wood... 48 6e-004
gb|CD026003.1|CD026003 NXSI_094_B05_F NXSI (Nsf Xylem Side ... 48 6e-004
gb|AI919915.1|AI919915 1445 Pine Lambda Zap Xylem library P... 44 0.009
gb|CD020387.1|CD020387 NXNV_063_F11_F Nsf Xylem Normal wood... 44 0.009
gb|DN631803.1|DN631803 EST982619 Subtracted pine embryo lib... 44 0.009
gb|CD025735.1|CD025735 NXSI_076_H12_F NXSI (Nsf Xylem Side ... 42 0.036
gb|CD026248.1|CD026248 NXSI_124_H01_F NXSI (Nsf Xylem Side ... 42 0.036
gb|AW042799.1|AW042799 ST25E08 Pine TriplEx shoot tip libra... 40 0.14
gb|BM428359.1|BM428359 NXRV_012_H05_F NXRV (Nsf Xylem Root ... 40 0.14
gb|CD021771.1|CD021771 NXNV_162_B05_F Nsf Xylem Normal wood... 40 0.14
gb|CD025307.1|CD025307 NXSI_041_E12_F NXSI (Nsf Xylem Side ... 40 0.14
gb|DN631769.1|DN631769 EST982585 Subtracted pine embryo lib... 40 0.14
gb|DT630690.1|DT630690 EST1155102 Subtracted pine embryo li... 40 0.14
>gb|CO197358.1|CO197358 GEO1_5_F07.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_5_F07_A029 5', mRNA sequence
Length = 700
Score = 242 bits (122), Expect = 2e-062
Identities = 302/362 (83%)
Strand = Plus / Minus
Query: 167 ggaggcaaggccccgcgcaagcagctcgccaccaaggcggcgaggaagtcggcgccgacg 226
||||||||||||||| | |||||||| |||||||||||||| ||||||| || || ||
Sbjct: 610 ggaggcaaggccccgaggaagcagctggccaccaaggcggcccggaagtccgcccccacc 551
Query: 227 accggcggcgtgaagaagccccacaggtacaggcccgggacggtggcgctgcgcgagatc 286
||||| || |||||||||||||| | || | || || || || || || || ||||||
Sbjct: 550 accggtggagtgaagaagccccatcgttatcgcccgggtaccgtcgccctccgtgagatc 491
Query: 287 cgcaagtaccagaagagcacggagctgctgatccggaagttgcccttccagcgcctggtc 346
|||||||| |||||| ||| |||||||| ||||| ||| |||||||||||||||| |||
Sbjct: 490 cgcaagtatcagaagtccacagagctgctcatccgcaagctgcccttccagcgccttgtc 431
Query: 347 cgtgagatcgctcaggacttcaagacggatctgcggttccagagccacgccgtcctggcc 406
| || |||||||||||||||||||| || || || ||||||||||||||||| || |||
Sbjct: 430 agggaaatcgctcaggacttcaagactgaccttcgcttccagagccacgccgtgctcgcc 371
Query: 407 ctccaggaagccgccgaggcctacctcgtcggcctgttcgaggacaccaacctctgcgcc 466
|||||||| ||| | ||||| ||||||||||| || || |||||||||||| | |||||
Sbjct: 370 ctccaggaggcctcagaggcatacctcgtcggtctctttgaggacaccaacttgtgcgca 311
Query: 467 atccacgcaaagcgcgtcaccatcatgcccaaagacatccagctcgcccgccgcatccgc 526
|||||||| ||||| ||||| || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 310 atccacgccaagcgggtcacgattatgcccaaggacattcagctcgccaggcgtatccgc 251
Query: 527 gg 528
||
Sbjct: 250 gg 249
>gb|AW011375.1|AW011375 ST20A07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20A07, mRNA sequence
Length = 599
Score = 184 bits (93), Expect = 4e-045
Identities = 321/397 (80%)
Strand = Plus / Plus
Query: 126 agaagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgca 185
|||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | |
Sbjct: 79 agaagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgagga 138
Query: 186 agcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagc 245
| |||||||| |||||||| |||||||| || || ||| |||| ||||| ||||||||||
Sbjct: 139 aacagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagc 198
Query: 246 cccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagca 305
| ||||| | |||||| || || || || || || |||||||| || || ||||||||||
Sbjct: 199 ctcacagattcaggccaggtactgttgccctccgtgagatccgaaaatatcagaagagca 258
Query: 306 cggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggact 365
||||||| |||| ||||| ||||||||||||| || || | || || ||||||||||
Sbjct: 259 cggagcttttgataaggaagctgcccttccagcgtctcgttagagaaattgctcaggact 318
Query: 366 tcaagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgagg 425
|||||||||||||| |||||||| | ||||| ||| || || ||||| || ||||
Sbjct: 319 tcaagacggatctgaggttccagtcctctgccgtggcggctctgcaagaagcggcggagg 378
Query: 426 cctacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtca 485
| || ||||| || || ||||||||||| ||||| |||||||| || || ||| | ||||
Sbjct: 379 catatctcgttggtctcttcgaggacactaacctgtgcgccatacatgcgaagagggtca 438
Query: 486 ccatcatgcccaaagacatccagctcgcccgccgcat 522
| || ||||||||||| || ||||| || ||||||||
Sbjct: 439 ctattatgcccaaagatattcagctggcacgccgcat 475
Score = 54.0 bits (27), Expect = 9e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 23 agaagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgca 82
|||||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | |
Sbjct: 79 agaagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgagga 138
Query: 83 agcagctcgca 93
| |||||||||
Sbjct: 139 aacagctcgca 149
>gb|BF777828.1|BF777828 NXSI_076_C08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_076_C08 5' similar to Arabidopsis thaliana
sequence At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 426
Score = 184 bits (93), Expect = 4e-045
Identities = 312/386 (80%)
Strand = Plus / Plus
Query: 140 acgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccacc 199
||||||||||| ||||| || || ||||| || ||||||||||| |||||||| || ||
Sbjct: 5 acgaagcagacagcccggaaatctaccggcgggaaggccccgcggaagcagctagcgacg 64
Query: 200 aaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacagg 259
||||| || ||||||| || ||| |||| || || ||||||||||| ||||| | ||||
Sbjct: 65 aaggctgctcggaagtctgccccggcgactggaggagtgaagaagcctcacagattcagg 124
Query: 260 cccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatc 319
||||| || || || || || |||||||| ||||||||||||||||| |||||| ||||
Sbjct: 125 cccggcactgttgccctccgtgagatccgaaagtaccagaagagcaccgagctgttgata 184
Query: 320 cggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggatctg 379
||||| | || |||||||| ||||| | ||||| || ||||| |||||||| ||||||
Sbjct: 185 aggaagcttcctttccagcgtctggtgagggagattgcccaggatttcaagaccgatctg 244
Query: 380 cggttccagagccacgccgtcctggccctccaggaagccgccgaggcctacctcgtcggc 439
|||| || | ||| || |||||||| || || || ||||| ||||| || ||
Sbjct: 245 aggtttcaatcctccgctgtggctgccctccaagaggcggcggaggcgtacctggtgggt 304
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
|| || || |||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 305 ctctttgaagacaccaacctctgcgccatccacgccaagnnngtgaccatcatgcccaaa 364
Query: 500 gacatccagctcgcccgccgcatccg 525
|| || ||||||||||||||||||||
Sbjct: 365 gatattcagctcgcccgccgcatccg 390
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 37 acgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagct 89
||||||||||| ||||| || || ||||| || ||||||||||| ||||||||
Sbjct: 5 acgaagcagacagcccggaaatctaccggcgggaaggccccgcggaagcagct 57
>gb|CN784396.1|CN784396 EST783087 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAL05 5' end, mRNA sequence
Length = 814
Score = 184 bits (93), Expect = 4e-045
Identities = 321/397 (80%)
Strand = Plus / Plus
Query: 129 agatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagc 188
||||||| || ||||||||||| ||||| || || ||||| || ||||||||||| ||||
Sbjct: 33 agatggcccgcacgaagcagacagcccggaaatctaccggcgggaaggccccgcggaagc 92
Query: 189 agctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagcccc 248
|||| || || ||||| || ||||||| || ||| |||| || || ||||||||||| |
Sbjct: 93 agctagcgacgaaggctgctcggaagtctgctccggcgactggaggagtgaagaagcctc 152
Query: 249 acaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacgg 308
|||| | ||||||||| || || || || || |||||||| ||||||||||||||||| |
Sbjct: 153 acagattcaggcccggcactgttgccctccgtgagatccgaaagtaccagaagagcaccg 212
Query: 309 agctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttca 368
||||| |||| ||||| | || |||||||| ||||| | ||||| || ||||| ||||
Sbjct: 213 agctgttgataaggaagcttcctttccagcgtctggtgagggagattgcccaggatttca 272
Query: 369 agacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcct 428
|||| |||||| |||| || | ||| || |||||||| || || || ||||| |
Sbjct: 273 agaccgatctgaggtttcaatcctccgctgtggctgccctccaagaggcggcggaggcgt 332
Query: 429 acctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacca 488
|||| || || || || || |||||||||||||||||||||||||| ||| | || ||||
Sbjct: 333 acctggtgggtctctttgaagacaccaacctctgcgccatccacgccaagagggtgacca 392
Query: 489 tcatgcccaaagacatccagctcgcccgccgcatccg 525
||||||| ||||| || ||||||||||||||||||||
Sbjct: 393 tcatgcctaaagatattcagctcgcccgccgcatccg 429
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 26 agatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagc 85
||||||| || ||||||||||| ||||| || || ||||| || ||||||||||| ||||
Sbjct: 33 agatggcccgcacgaagcagacagcccggaaatctaccggcgggaaggccccgcggaagc 92
Query: 86 agct 89
||||
Sbjct: 93 agct 96
>gb|DT625465.1|DT625465 EST1157389 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA027 5' end, mRNA sequence
Length = 881
Score = 184 bits (93), Expect = 4e-045
Identities = 321/397 (80%)
Strand = Plus / Plus
Query: 129 agatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagc 188
||||||| || ||||||||||| ||||| || || ||||| || ||||||||||| ||||
Sbjct: 41 agatggcccgcacgaagcagacagcccggaaatctaccggcgggaaggccccgcggaagc 100
Query: 189 agctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagcccc 248
|||| || || ||||| || ||||||| || ||| |||| || || ||||||||||| |
Sbjct: 101 agctagcgacgaaggctgctcggaagtctgctccggcgactggaggagtgaagaagcctc 160
Query: 249 acaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacgg 308
|||| | ||||||||| || || || || || |||||||| ||||||||||||||||| |
Sbjct: 161 acagattcaggcccggcactgttgccctccgtgagatccgaaagtaccagaagagcaccg 220
Query: 309 agctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttca 368
||||| |||| ||||| | || |||||||| ||||| | ||||| || ||||| ||||
Sbjct: 221 agctgttgataaggaagcttcctttccagcgtctggtgagggagattgcccaggatttca 280
Query: 369 agacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcct 428
|||| |||||| |||| || | ||| || |||||||| || || || ||||| |
Sbjct: 281 agaccgatctgaggtttcaatcctccgctgtggctgccctccaagaggcggcggaggcgt 340
Query: 429 acctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacca 488
|||| || || || || || |||||||||||||||||||||||||| ||| | || ||||
Sbjct: 341 acctggtgggtctctttgaagacaccaacctctgcgccatccacgccaagagggtgacca 400
Query: 489 tcatgcccaaagacatccagctcgcccgccgcatccg 525
||||||| ||||| || ||||||||||||||||||||
Sbjct: 401 tcatgcctaaagatattcagctcgcccgccgcatccg 437
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 26 agatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagc 85
||||||| || ||||||||||| ||||| || || ||||| || ||||||||||| ||||
Sbjct: 41 agatggcccgcacgaagcagacagcccggaaatctaccggcgggaaggccccgcggaagc 100
Query: 86 agct 89
||||
Sbjct: 101 agct 104
>gb|CR393585.1|CR393585 CR393585 RN Pinus pinaster cDNA clone RN62B01, mRNA sequence
Length = 522
Score = 172 bits (87), Expect = 1e-041
Identities = 318/395 (80%)
Strand = Plus / Plus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 59 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 118
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 119 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 178
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 179 cacagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 238
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| |||| ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 239 gagcttttgataaggaagctgcccttccagcgtctcgttagagaaattgctcaggacttc 298
Query: 368 aagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcc 427
|||||||||||| |||||||| | ||||| ||| || || ||||| || |||||
Sbjct: 299 aagacggatctgaggttccagtcctctgccgtggcggctctgcaagaagcggcggaggca 358
Query: 428 tacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacc 487
|| ||||| || || ||||||||||| ||||| |||||||| || || ||| | || ||
Sbjct: 359 tatctcgtgggtctcttcgaggacactaacctgtgcgccatacatgcgaagagggtgact 418
Query: 488 atcatgcccaaagacatccagctcgcccgccgcat 522
|| ||||||||||| || ||||| || ||||||||
Sbjct: 419 attatgcccaaagatattcagctggctcgccgcat 453
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 59 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 118
Query: 85 cagctcgca 93
|||||||||
Sbjct: 119 cagctcgca 127
>gb|CN784242.1|CN784242 EST782933 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAJ08 5' end, mRNA sequence
Length = 814
Score = 172 bits (87), Expect = 1e-041
Identities = 318/395 (80%)
Strand = Plus / Plus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 61 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 120
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 121 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 180
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 181 cacagattcaggccaggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 240
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| |||| ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 241 gagcttttgataaggaagctgcccttccagcgtctcgttagagaaattgctcaggacttc 300
Query: 368 aagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcc 427
|||||||||||| |||||||| | ||||| ||| || || ||||| || |||||
Sbjct: 301 aagacggatctgaggttccagtcctctgccgtggcggctctgcaagaagcggcggaggca 360
Query: 428 tacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacc 487
|| ||||| || || ||||||||||| ||||| |||||||| || || ||| | |||||
Sbjct: 361 tatctcgttggtctcttcgaggacactaacctgtgcgccatacatgcgaagagggtcact 420
Query: 488 atcatgcccaaagacatccagctcgcccgccgcat 522
|| ||||| ||||| || ||||| || ||||||||
Sbjct: 421 attatgccgaaagatattcagctggcacgccgcat 455
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 61 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 120
Query: 85 cagctcgca 93
|||||||||
Sbjct: 121 cagctcgca 129
>gb|DR069155.1|DR069155 RTDK1_5_F04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_F04_A029 3', mRNA sequence
Length = 754
Score = 172 bits (87), Expect = 1e-041
Identities = 318/395 (80%)
Strand = Plus / Minus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 731 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 672
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 671 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 612
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 611 cacagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 552
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| | || ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 551 gagcttttaataaggaagctgcccttccagcgtctcgtgagagaaattgctcaggacttc 492
Query: 368 aagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcc 427
|||||||||||| |||||||| | ||||| ||| || || ||||| || |||||
Sbjct: 491 aagacggatctgaggttccagtcctctgccgtggcggctctgcaagaagcagcggaggca 432
Query: 428 tacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacc 487
|| ||||| || || ||||||||||| ||||| |||||||| || || ||| | |||||
Sbjct: 431 tatctcgtgggtctcttcgaggacactaacctgtgcgccatacatgcgaagagggtcact 372
Query: 488 atcatgcccaaagacatccagctcgcccgccgcat 522
|| ||||||||||| || ||||| || ||||||||
Sbjct: 371 attatgcccaaagatattcagctggctcgccgcat 337
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 731 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 672
Query: 85 cagctcgca 93
|||||||||
Sbjct: 671 cagctcgca 663
>gb|DR069228.1|DR069228 RTDK1_5_F04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_F04_A029 5', mRNA sequence
Length = 749
Score = 172 bits (87), Expect = 1e-041
Identities = 318/395 (80%)
Strand = Plus / Minus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 711 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 652
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 651 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 592
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 591 cacagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 532
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| | || ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 531 gagcttttaataaggaagctgcccttccagcgtctcgtgagagaaattgctcaggacttc 472
Query: 368 aagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcc 427
|||||||||||| |||||||| | ||||| ||| || || ||||| || |||||
Sbjct: 471 aagacggatctgaggttccagtcctctgccgtggcggctctgcaagaagcagcggaggca 412
Query: 428 tacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacc 487
|| ||||| || || ||||||||||| ||||| |||||||| || || ||| | |||||
Sbjct: 411 tatctcgtgggtctcttcgaggacactaacctgtgcgccatacatgcgaagagggtcact 352
Query: 488 atcatgcccaaagacatccagctcgcccgccgcat 522
|| ||||||||||| || ||||| || ||||||||
Sbjct: 351 attatgcccaaagatattcagctggctcgccgcat 317
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 711 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 652
Query: 85 cagctcgca 93
|||||||||
Sbjct: 651 cagctcgca 643
>gb|DT625675.1|DT625675 EST1157599 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA250 5' end, mRNA sequence
Length = 812
Score = 172 bits (87), Expect = 1e-041
Identities = 318/395 (80%)
Strand = Plus / Plus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 60 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 119
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 120 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 179
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 180 cacagattcaggccaggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 239
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| |||| ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 240 gagcttttgataaggaagctgcccttccagcgtctcgttagagaaattgctcaggacttc 299
Query: 368 aagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcc 427
|||||||||||| |||||||| | ||||| ||| || || ||||| || |||||
Sbjct: 300 aagacggatctgaggttccagtcctctgccgtggcggctctgcaagaagcggcggaggca 359
Query: 428 tacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacc 487
|| ||||| || || ||||||||||| ||||| |||||||| || || ||| | |||||
Sbjct: 360 tatctcgttggtctcttcgaggacactaacctgtgcgccatacatgcgaagagggtcact 419
Query: 488 atcatgcccaaagacatccagctcgcccgccgcat 522
|| ||||| ||||| || ||||| || ||||||||
Sbjct: 420 attatgccgaaagatattcagctggcacgccgcat 454
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 60 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 119
Query: 85 cagctcgca 93
|||||||||
Sbjct: 120 cagctcgca 128
>gb|CF385410.1|CF385410 RTDR1_3_F08.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_F08_A015 5', mRNA
sequence
Length = 600
Score = 168 bits (85), Expect = 2e-040
Identities = 316/393 (80%)
Strand = Plus / Plus
Query: 143 aagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccaccaag 202
|||||||||||||||||||||||||| |||||||| || ||||||||||| ||| |||||
Sbjct: 2 aagcagaccgcccgcaagtccaccggtggcaaggctcctcgcaagcagcttgcctccaag 61
Query: 203 gcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacaggccc 262
|| || | ||| || ||| | ||||| ||||| |||||||| ||| | |||| ||||
Sbjct: 62 gctgcccgcaagagcgccccgtctaccggtggcgtcaagaagcctcaccgctacaagccc 121
Query: 263 gggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatccgg 322
|| || || || || || |||||||| ||||||||| || ||||| ||||||||
Sbjct: 122 ggtaccgtcgctctccgtgagatccgtcgctaccagaagtcgactgagctcctgatccgc 181
Query: 323 aagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggatctgcgg 382
||| ||||||||||||||||||| |||||||| || |||||||||||| | ||||| ||
Sbjct: 182 aagctgcccttccagcgcctggttcgtgagattgcccaggacttcaagtctgatctccgc 241
Query: 383 ttccagagccacgccgtcctggccctccaggaagccgccgaggcctacctcgtcggcctg 442
|||||| ||| || ||||||||||| | | |||| ||||||||||| ||
Sbjct: 242 ttccagtcgtctgccatcggcgccctccaggagtcggtcgagtcctacctcgtctcgctc 301
Query: 443 ttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaagac 502
||||||||||||||||| |||||||||||||| ||||||||||| ||| | |||| |||
Sbjct: 302 ttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcacgatccagtccaaggac 361
Query: 503 atccagctcgcccgccgcatccgcggcgagcgc 535
|||||||| || || ||| | || |||||||||
Sbjct: 362 atccagctggctcgtcgcctgcgtggcgagcgc 394
Score = 75.8 bits (38), Expect = 3e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 40 aagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagct 89
|||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 2 aagcagaccgcccgcaagtccaccggtggcaaggctcctcgcaagcagct 51
>gb|BX248920.1|BX248920 BX248920 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP002F11, mRNA sequence
Length = 516
Score = 165 bits (83), Expect = 4e-039
Identities = 308/383 (80%)
Strand = Plus / Plus
Query: 140 acgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccacc 199
||||||||||| ||||| || |||||||| || ||||| ||| | || |||||||| |||
Sbjct: 6 acgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaacagctcgcaacc 65
Query: 200 aaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacagg 259
||||| |||||||| || || ||| |||| ||||| ||||||||||| ||||| | ||||
Sbjct: 66 aaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcctcacagattcagg 125
Query: 260 cccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatc 319
|| || || || || || || |||||||| || || ||||||||||||||||| ||||
Sbjct: 126 ccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacggagcttttgata 185
Query: 320 cggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggatctg 379
||||| ||||||||||||| || || | || || ||||||||||||||||||||||||
Sbjct: 186 aggaagctgcccttccagcgtctcgttagagaaattgctcaggacttcaagacggatctg 245
Query: 380 cggttccagagccacgccgtcctggccctccaggaagccgccgaggcctacctcgtcggc 439
|||||||| | ||||| ||| || || ||||| || ||||| || ||||| ||
Sbjct: 246 aggttccagtcctctgccgtggcggctctgcaagaagcggcggaggcatatctcgtgggt 305
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
|| ||||||||||| ||||| |||||||| || || ||| | || || || |||||||||
Sbjct: 306 ctcttcgaggacactaacctgtgcgccatacatgcgaagagggtgactattatgcccaaa 365
Query: 500 gacatccagctcgcccgccgcat 522
|| || ||||| || ||||||||
Sbjct: 366 gatattcagctggctcgccgcat 388
Score = 42.1 bits (21), Expect = 0.036
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 37 acgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgca 93
||||||||||| ||||| || |||||||| || ||||| ||| | || |||||||||
Sbjct: 6 acgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaacagctcgca 62
>gb|CF401684.1|CF401684 RTWW1_14_A10.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_A10_A015 3', mRNA sequence
Length = 647
Score = 165 bits (83), Expect = 4e-039
Identities = 317/395 (80%)
Strand = Plus / Minus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 603 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 544
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 543 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 484
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 483 cacagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 424
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| |||| ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 423 gagcttttgataaggaagctgcccttccagcgtctcgttagagaaattgctcaggacttc 364
Query: 368 aagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcc 427
||||||||||| |||||||| | ||||| ||| || || ||||| || |||||
Sbjct: 363 aagacggatctaaggttccagtcctctgccgtggcggctctgcaagaagcggcggaggca 304
Query: 428 tacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacc 487
|| ||||| || || ||||| ||||| ||||| |||||||| || || ||| | |||||
Sbjct: 303 tatctcgtgggtctcttcgaagacactaacctgtgcgccatacatgcgaagagggtcact 244
Query: 488 atcatgcccaaagacatccagctcgcccgccgcat 522
|| ||||||||||| || ||||| || ||||||||
Sbjct: 243 attatgcccaaagatattcagctggctcgccgcat 209
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 603 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 544
Query: 85 cagctcgca 93
|||||||||
Sbjct: 543 cagctcgca 535
>gb|CF402000.1|CF402000 RTWW1_16_E09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_E09_A015 5', mRNA sequence
Length = 698
Score = 163 bits (82), Expect = 1e-038
Identities = 316/394 (80%)
Strand = Plus / Plus
Query: 129 agatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagc 188
||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | || |
Sbjct: 1 agatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaac 60
Query: 189 agctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagcccc 248
||||||| || ||||| |||||||| || || ||| |||| ||||| ||||||||||| |
Sbjct: 61 agctcgcaacgaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcctc 120
Query: 249 acaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacgg 308
|||| | |||||| || || || || || || |||||||| || || |||||||||||||
Sbjct: 121 acagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacgg 180
Query: 309 agctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttca 368
|||| | || ||||| ||||||||||||| || || | || || |||||||||||||
Sbjct: 181 agcttttaataaggaagctgcccttccagcgtctcgtgagagaaattgctcaggacttca 240
Query: 369 agacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcct 428
||||||||||| |||||||| | ||||| ||| || || ||||| || ||||| |
Sbjct: 241 agacggatctgaggttccagtcctctgccgtggcggctctgcaagaagcagcggaggcat 300
Query: 429 acctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacca 488
| ||||| || || ||||||||||| ||||| |||||||| || || ||| | ||||| |
Sbjct: 301 atctcgtgggtctcttcgaggacactaacctgtgcgccatacatgcgaagagggtcacta 360
Query: 489 tcatgcccaaagacatccagctcgcccgccgcat 522
| ||||||||||| || ||||| || ||||||||
Sbjct: 361 ttatgcccaaagatattcagctggctcgccgcat 394
Score = 48.1 bits (24), Expect = 6e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 26 agatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagc 85
||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | || |
Sbjct: 1 agatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaac 60
Query: 86 agctcgca 93
||||||||
Sbjct: 61 agctcgca 68
>gb|DR092621.1|DR092621 STRR1_2_C09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_2_C09_A033 5', mRNA sequence
Length = 867
Score = 163 bits (82), Expect = 1e-038
Identities = 316/394 (80%)
Strand = Plus / Plus
Query: 129 agatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagc 188
||||||| || || |||||||| ||||| ||||| || ||||| |||||||| || ||||
Sbjct: 28 agatggcccgaacaaagcagactgcccgtaagtcaactggaggaaaggccccacggaagc 87
Query: 189 agctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagcccc 248
|||| || |||||||| || |||||||| || ||| | ||||| || || |||||||| |
Sbjct: 88 agctggcgaccaaggcagccaggaagtctgcaccggcaaccggtggagtcaagaagcctc 147
Query: 249 acaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacgg 308
|||||| |||||| || || || || || || || ||||| || |||||||||||||| |
Sbjct: 148 acaggttcaggcctggcactgttgctcttcgtgaaatccgaaaataccagaagagcaccg 207
Query: 309 agctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttca 368
|||| ||||| | ||| ||||||||||| | || || | ||||| || ||||| ||||
Sbjct: 208 agcttctgataagaaagctgcccttccagaggctcgtaagggagattgcccaggatttca 267
Query: 369 agacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcct 428
||||||| || |||||||| ||| || ||| || || ||||| ||||| || |
Sbjct: 268 agacggacttgaggttccagtcgtccgcggtggcggcactacaagaagcggccgaagcat 327
Query: 429 acctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcacca 488
| || || || |||||||||||||||||||| |||||||||||||| ||| | || ||||
Sbjct: 328 atcttgttgggctgttcgaggacaccaacctgtgcgccatccacgcgaagagggtgacca 387
Query: 489 tcatgcccaaagacatccagctcgcccgccgcat 522
||||||||||||| |||||||| || ||||||||
Sbjct: 388 tcatgcccaaagatatccagcttgctcgccgcat 421
>gb|BM158100.1|BM158100 NXLV_029_D12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_029_D12 5' similar to Arabidopsis thaliana
sequence At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 563
Score = 153 bits (77), Expect = 1e-035
Identities = 215/261 (82%)
Strand = Plus / Plus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 91 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 150
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 151 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 210
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 211 cacagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 270
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| | || ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 271 gagcttttaataaggaagctgcccttccagcgtctcgtgagagaaattgctcaggacttc 330
Query: 368 aagacggatctgcggttccag 388
|||||||||||| ||||||||
Sbjct: 331 aagacggatctgaggttccag 351
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 91 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 150
Query: 85 cagctcgca 93
|||||||||
Sbjct: 151 cagctcgca 159
Score = 48.1 bits (24), Expect = 6e-004
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 413 gaagccgccgaggcctacctcgtcggcctgttcgaggacaccaacctctgcgccatccac 472
||||| || ||||| || ||||| || || ||||||||||| ||||| |||||||| ||
Sbjct: 376 gaagcagcggaggcatatctcgtgggtctcttcgaggacactaacctgtgcgccatacat 435
Query: 473 gcaaagcgcgtcaccatcatgcccaaagacatccagct 510
|| ||| ||||| || ||||||||||| || |||||
Sbjct: 436 gcgaaganngtcactattatgcccaaagatattcagct 473
>gb|AW064884.1|AW064884 ST37A03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST37A03, mRNA sequence
Length = 466
Score = 151 bits (76), Expect = 5e-035
Identities = 171/203 (84%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 127 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 186
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 187 ccccacaggttcaggcccggtactgtagcccttcgtgagatccgaaagtaccagaagagc 246
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 247 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 306
Query: 365 ttcaagacggatctgcggttcca 387
|||||||| ||| || |||||||
Sbjct: 307 ttcaagacagatttgnggttcca 329
>gb|AW065072.1|AW065072 ST39C07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39C07, mRNA sequence
Length = 601
Score = 151 bits (76), Expect = 5e-035
Identities = 172/204 (84%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 69 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 128
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 129 ccccacaggttcaggcccggtactgtagcccttcgtgagatccgaaagtaccagaagagc 188
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 189 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 248
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 249 ttcaagacagatttgaggttccag 272
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| | ||||||||||||||||||
Sbjct: 324 ctgtttgaggacaccaacctgtgtgccattcatgccaagagggtcaccatcatgcccaaa 383
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 384 gatatccagctcgctcgccgcatccg 409
>gb|BF220721.1|BF220721 NXCI_149_G09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_149_G09 5' similar to Arabidopsis
thaliana sequence At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 151 bits (76), Expect = 5e-035
Identities = 172/204 (84%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 105 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 164
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 165 ccccacaggttcaggcccggtactgttgcccttcgtgagatccgaaagtaccagaagagc 224
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 225 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 284
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 285 ttcaagacagatttgaggttccag 308
Score = 87.7 bits (44), Expect = 7e-016
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| ||||||||||||||||||
Sbjct: 360 ctgtttgaggacaccaacctgtgtgccattcatgccaaganngtcaccatcatgcccaaa 419
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 420 gatatccagctcgctcgccgcatccg 445
>gb|AW010420.1|AW010420 ST06F02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06F02, mRNA sequence
Length = 715
Score = 145 bits (73), Expect = 3e-033
Identities = 169/201 (84%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 196 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 255
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 256 ccccacaggttcaggcccggtactgtagcccttcgtgagatccgaaagtaccagaagagc 315
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 316 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 375
Query: 365 ttcaagacggatctgcggttc 385
|||||||| ||| || |||||
Sbjct: 376 ttcaagacagatttgaggttc 396
Score = 85.7 bits (43), Expect = 3e-015
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || | ||| || || ||| | ||||||||||||||||||
Sbjct: 455 ctgtttgaggacaccaacctgtgtgncattcatgccaagagggtcaccatcatgcccaaa 514
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 515 gatatccagctcgctcgccgcatccg 540
>gb|AW289620.1|AW289620 NXNV003F01F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003F01 5', mRNA sequence
Length = 500
Score = 143 bits (72), Expect = 1e-032
Identities = 171/204 (83%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 114 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 173
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|| ||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 174 cctcacaggttcaggcccggtactgttgcccttcgtgagatccgaaagtaccagaagagc 233
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 234 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 293
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 294 ttcaagacagatttgaggttccag 317
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| | ||||||||||||||||||
Sbjct: 369 ctgtttgaggacaccaacctgtgtgccattcatgccaagagggtcaccatcatgcccaaa 428
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 429 gatatccagctcgctcgccgcatccg 454
>gb|CD028214.1|CD028214 NXNV003F01 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003F01 5' similar to Arabidopsis thaliana sequence
At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 500
Score = 143 bits (72), Expect = 1e-032
Identities = 171/204 (83%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 114 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 173
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|| ||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 174 cctcacaggttcaggcccggtactgttgcccttcgtgagatccgaaagtaccagaagagc 233
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 234 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 293
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 294 ttcaagacagatttgaggttccag 317
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| | ||||||||||||||||||
Sbjct: 369 ctgtttgaggacaccaacctgtgtgccattcatgccaagagggtcaccatcatgcccaaa 428
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 429 gatatccagctcgctcgccgcatccg 454
>gb|DN457285.1|DN457285 EST953084 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGY23 5' end, mRNA sequence
Length = 691
Score = 143 bits (72), Expect = 1e-032
Identities = 171/204 (83%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 112 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 171
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|| ||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 172 cctcacaggttcaggcccggtactgttgcccttcgtgagatccgaaagtaccagaagagc 231
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 232 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 291
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 292 ttcaagacagatttgaggttccag 315
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| | ||||||||||||||||||
Sbjct: 367 ctgtttgaggacaccaacctgtgtgccattcatgccaagagggtcaccatcatgcccaaa 426
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 427 gatatccagctcgctcgccgcatccg 452
>gb|DT626741.1|DT626741 EST1159817 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAQ74 5' end, mRNA sequence
Length = 691
Score = 143 bits (72), Expect = 1e-032
Identities = 171/204 (83%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 112 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 171
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|| ||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 172 cctcacaggttcaggcccggtactgttgcccttcgtgagatccgaaagtaccagaagagc 231
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 232 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 291
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 292 ttcaagacagatttgaggttccag 315
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| | ||||||||||||||||||
Sbjct: 367 ctgtttgaggacaccaacctgtgtgccattcatgccaagagggtcaccatcatgcccaaa 426
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 427 gatatccagctcgctcgccgcatccg 452
>gb|DR091635.1|DR091635 RTAL1_23_A05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_23_A05_A029 3', mRNA sequence
Length = 733
Score = 141 bits (71), Expect = 5e-032
Identities = 152/179 (84%)
Strand = Plus / Plus
Query: 210 ggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacaggcccgggacgg 269
||||||| || ||| |||| || || ||||||||||||||||||| ||||||||| || |
Sbjct: 178 ggaagtctgctccggcgacaggaggagtgaagaagccccacaggttcaggcccggtactg 237
Query: 270 tggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatccggaagttgc 329
| || || || |||||||| ||||||||||||||||| ||||||||||| | |||||||
Sbjct: 238 ttgcccttcgtgagatccgaaagtaccagaagagcacagagctgctgataagaaagttgc 297
Query: 330 ccttccagcgcctggtccgtgagatcgctcaggacttcaagacggatctgcggttccag 388
| |||||||||||||| | ||||| || |||||||||||||| ||| || ||||||||
Sbjct: 298 cattccagcgcctggtaagggagattgcccaggacttcaagacagatttgaggttccag 356
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| | ||||||||||||||||||
Sbjct: 408 ctgtttgaggacaccaacctgtgtgccattcatgccaagagggtcaccatcatgcccaaa 467
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 468 gatatccagctcgctcgccgcatccg 493
>gb|CR392139.1|CR392139 CR392139 RN Pinus pinaster cDNA clone RN27A05, mRNA sequence
Length = 506
Score = 139 bits (70), Expect = 2e-031
Identities = 202/246 (82%)
Strand = Plus / Plus
Query: 143 aagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccaccaag 202
|||||||| ||||| || || || || |||||||| || ||||||||||| || || |||
Sbjct: 20 aagcagactgcccgtaaatcaactggtggcaaggctcctcgcaagcagctggcaacgaag 79
Query: 203 gcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacaggccc 262
||||| |||||||| || || |||| ||||| ||||||||||||||||| | |||||||
Sbjct: 80 gcggccaggaagtctgcaccagcgacgggcggagtgaagaagccccacagattcaggccc 139
Query: 263 gggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatccgg 322
|| || || || || || || || || ||||||||||||||||| ||||| || || ||
Sbjct: 140 ggtactgttgctcttcgggaaattcgaaagtaccagaagagcaccgagcttctcataagg 199
Query: 323 aagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggatctgcgg 382
||| ||||||||||| | || || | |||||||| ||||| ||||||||||||||| ||
Sbjct: 200 aagctgcccttccagagacttgtaagagagatcgcccaggatttcaagacggatctgagg 259
Query: 383 ttccag 388
||||||
Sbjct: 260 ttccag 265
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||||||||||||||| || || || |||||||||||| | ||||||||||||||||||
Sbjct: 317 ctgttcgaggacaccaatctgtgtgctatccacgcaaagagggtcaccatcatgcccaaa 376
Query: 500 gacatccagctcgcccgccgcatccg 525
||||| ||||| || || ||||||||
Sbjct: 377 gacatacagcttgctcgtcgcatccg 402
>gb|AW225787.1|AW225787 ST71G07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST71G07, mRNA sequence
Length = 432
Score = 137 bits (69), Expect = 8e-031
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 121 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 180
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 181 ccccacaggttcaggcccggtactgtagcccttcgtgagatccgaaagtaccagaagagc 240
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 241 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 300
Query: 365 ttcaagac 372
||| ||||
Sbjct: 301 ttcnagac 308
>gb|CF389752.1|CF389752 RTDR2_5_D09.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_5_D09_A021 3', mRNA
sequence
Length = 540
Score = 137 bits (69), Expect = 8e-031
Identities = 132/153 (86%)
Strand = Plus / Plus
Query: 236 gtgaagaagccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtac 295
||||||||||| ||||||| ||||||||| || ||||| || || |||||||| ||||||
Sbjct: 156 gtgaagaagcctcacaggttcaggcccggtaccgtggcccttcgtgagatccgaaagtac 215
Query: 296 cagaagagcacggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatc 355
||||||||||| |||||||| || | |||||||| |||||||||||||| | ||||||
Sbjct: 216 cagaagagcacagagctgctaattagaaagttgccattccagcgcctggtgagggagatc 275
Query: 356 gctcaggacttcaagacggatctgcggttccag 388
|| |||||||||||||| ||| || ||||||||
Sbjct: 276 gcccaggacttcaagacagatttgaggttccag 308
Score = 83.8 bits (42), Expect = 1e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || |||||||| || ||| | ||||| ||||||||||||
Sbjct: 360 ctgtttgaggacaccaacctgtgtgccatccatgccaagagggtcactatcatgcccaaa 419
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| ||||| |||||
Sbjct: 420 gatatccagctcgctcgccgtatccg 445
>gb|CF389780.1|CF389780 RTDR2_5_D09.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_5_D09_A021 5', mRNA
sequence
Length = 531
Score = 137 bits (69), Expect = 8e-031
Identities = 132/153 (86%)
Strand = Plus / Plus
Query: 236 gtgaagaagccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtac 295
||||||||||| ||||||| ||||||||| || ||||| || || |||||||| ||||||
Sbjct: 134 gtgaagaagcctcacaggttcaggcccggtaccgtggcccttcgtgagatccgaaagtac 193
Query: 296 cagaagagcacggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatc 355
||||||||||| |||||||| || | |||||||| |||||||||||||| | ||||||
Sbjct: 194 cagaagagcacagagctgctaattagaaagttgccattccagcgcctggtgagggagatc 253
Query: 356 gctcaggacttcaagacggatctgcggttccag 388
|| |||||||||||||| ||| || ||||||||
Sbjct: 254 gcccaggacttcaagacagatttgaggttccag 286
Score = 83.8 bits (42), Expect = 1e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || |||||||| || ||| | ||||| ||||||||||||
Sbjct: 338 ctgtttgaggacaccaacctgtgtgccatccatgccaagagggtcactatcatgcccaaa 397
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| ||||| |||||
Sbjct: 398 gatatccagctcgctcgccgtatccg 423
>gb|BX250798.1|BX250798 BX250798 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041D06, mRNA sequence
Length = 680
Score = 135 bits (68), Expect = 3e-030
Identities = 170/204 (83%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 104 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 163
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|| ||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 164 cctcacaggttcaggcccggtactgttgcccttcgtgagatccgaaagtaccagaagagc 223
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| |||||| |||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 224 acagagctgttgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 283
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 284 ttcaagacagatttgaggttccag 307
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || |||||||| || ||| | ||||||||||||||||||
Sbjct: 359 ctgtttgaggacaccaacctgtgtgccatccatgccaagagggtcaccatcatgcccaaa 418
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| ||||| |||||
Sbjct: 419 gatatccagctcgctcgccgtatccg 444
>gb|BX677132.1|BX677132 BX677132 RN Pinus pinaster cDNA clone RN18B03, mRNA sequence
Length = 567
Score = 135 bits (68), Expect = 3e-030
Identities = 170/204 (83%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 27 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 86
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|| ||||||| ||||||||| || || || || || |||||||| |||||||||||||||
Sbjct: 87 cctcacaggttcaggcccggtactgttgcccttcgtgagatccgaaagtaccagaagagc 146
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| |||||| |||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 147 acagagctgttgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 206
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 207 ttcaagacagatttgaggttccag 230
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || |||||||| || ||| | ||||||||||||||||||
Sbjct: 282 ctgtttgaggacaccaacctgtgtgccatccatgccaagagggtcaccatcatgcccaaa 341
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| ||||| |||||
Sbjct: 342 gatatccagctcgctcgccgtatccg 367
>gb|BF010654.1|BF010654 NXCI_087_F06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_087_F06 5' similar to Arabidopsis
thaliana sequence At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 133 bits (67), Expect = 1e-029
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 105 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 164
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || |||| || |||||||||||||||
Sbjct: 165 ccccacaggttcaggcccggtactgttgcccttcgtgaganncgaaagtaccagaagagc 224
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||| ||| ||||||
Sbjct: 225 acagagctgctgataagaaagttgccattccagcgcctggtaagggagancgcccaggac 284
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || ||||||||
Sbjct: 285 ttcaagacagatttgaggttccag 308
>gb|AW290084.1|AW290084 NXNV010B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010B06 5', mRNA sequence
Length = 354
Score = 131 bits (66), Expect = 5e-029
Identities = 205/252 (81%)
Strand = Plus / Plus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 59 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 118
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 119 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 178
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 179 cacagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 238
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| | || ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 239 gagcttttaataaggaagctgcccttccagcgtctcgtgagagaaattgctcaggacttc 298
Query: 368 aagacggatctg 379
||||| |||||
Sbjct: 299 nagacgnatctg 310
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 59 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 118
Query: 85 cagctcgca 93
|||||||||
Sbjct: 119 cagctcgca 127
>gb|CD026722.1|CD026722 NXNV010B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010B06 5' similar to Arabidopsis thaliana sequence
At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 354
Score = 131 bits (66), Expect = 5e-029
Identities = 205/252 (81%)
Strand = Plus / Plus
Query: 128 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 187
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 59 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 118
Query: 188 cagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccc 247
|||||||| |||||||| |||||||| || || ||| |||| ||||| |||||||||||
Sbjct: 119 cagctcgcaaccaaggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcct 178
Query: 248 cacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacg 307
||||| | |||||| || || || || || || |||||||| || || ||||||||||||
Sbjct: 179 cacagattcaggccgggtactgttgccctccgtgagatccgaaaatatcagaagagcacg 238
Query: 308 gagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttc 367
||||| | || ||||| ||||||||||||| || || | || || ||||||||||||
Sbjct: 239 gagcttttaataaggaagctgcccttccagcgtctcgtgagagaaattgctcaggacttc 298
Query: 368 aagacggatctg 379
||||| |||||
Sbjct: 299 nagacgnatctg 310
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 25 aagatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaag 84
|||||||| || ||||||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct: 59 aagatggcccgaacgaagcagactgcccgtaaatccaccggtgggaaggcgccgaggaaa 118
Query: 85 cagctcgca 93
|||||||||
Sbjct: 119 cagctcgca 127
>gb|DN464344.1|DN464344 EST960143 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJA57 5' end, mRNA sequence
Length = 699
Score = 131 bits (66), Expect = 5e-029
Identities = 204/250 (81%)
Strand = Plus / Plus
Query: 130 gatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagca 189
|||||| || ||||||||||| || || || ||||| || || ||||| ||| | |||||
Sbjct: 56 gatggcgcgaacgaagcagactgcacgtaaatccactggcgggaaggcgccgaggaagca 115
Query: 190 gctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagcccca 249
||| || || ||||| |||||||| || |||||| | || ||||| || |||||||| ||
Sbjct: 116 gcttgcaacaaaggctgcgaggaaatccgcgccggccactggcggagtaaagaagcctca 175
Query: 250 caggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacgga 309
||| | |||||| || || || || || || ||||| || |||||||||||||| || ||
Sbjct: 176 cagattcaggccgggcactgttgctctccgtgagattcgaaagtaccagaagagtactga 235
Query: 310 gctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaa 369
||| || || ||||||||||||||||||| || ||| | |||||||| |||||||||||
Sbjct: 236 gcttcttataaggaagttgcccttccagcgtcttgtcagagagatcgcacaggacttcaa 295
Query: 370 gacggatctg 379
||||||||||
Sbjct: 296 gacggatctg 305
Score = 67.9 bits (34), Expect = 6e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 413 gaagccgccgaggcctacctcgtcggcctgttcgaggacaccaacctctgcgccatccac 472
||||| || |||||||| || || ||||| || ||||| || |||||||||||||| ||
Sbjct: 339 gaagcagcggaggcctatcttgttggcctctttgaggatactaacctctgcgccattcat 398
Query: 473 gcaaagcgcgtcaccatcatgcccaaagacatccagct 510
|| ||| | || ||||||||||||||||| ||||||||
Sbjct: 399 gccaagagggttaccatcatgcccaaagatatccagct 436
>gb|DT627409.1|DT627409 EST1160485 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAY29 5' end, mRNA sequence
Length = 699
Score = 131 bits (66), Expect = 5e-029
Identities = 204/250 (81%)
Strand = Plus / Plus
Query: 130 gatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagca 189
|||||| || ||||||||||| || || || ||||| || || ||||| ||| | |||||
Sbjct: 56 gatggcgcgaacgaagcagactgcacgtaaatccactggcgggaaggcgccgaggaagca 115
Query: 190 gctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagcccca 249
||| || || ||||| |||||||| || |||||| | || ||||| || |||||||| ||
Sbjct: 116 gcttgcaacaaaggctgcgaggaaatccgcgccggccactggcggagtaaagaagcctca 175
Query: 250 caggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacgga 309
||| | |||||| || || || || || || ||||| || |||||||||||||| || ||
Sbjct: 176 cagattcaggccgggcactgttgctctccgtgagattcgaaagtaccagaagagtactga 235
Query: 310 gctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaa 369
||| || || ||||||||||||||||||| || ||| | |||||||| |||||||||||
Sbjct: 236 gcttcttataaggaagttgcccttccagcgtcttgtcagagagatcgcacaggacttcaa 295
Query: 370 gacggatctg 379
||||||||||
Sbjct: 296 gacggatctg 305
Score = 67.9 bits (34), Expect = 6e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 413 gaagccgccgaggcctacctcgtcggcctgttcgaggacaccaacctctgcgccatccac 472
||||| || |||||||| || || ||||| || ||||| || |||||||||||||| ||
Sbjct: 339 gaagcagcggaggcctatcttgttggcctctttgaggatactaacctctgcgccattcat 398
Query: 473 gcaaagcgcgtcaccatcatgcccaaagacatccagct 510
|| ||| | || ||||||||||||||||| ||||||||
Sbjct: 399 gccaagagggttaccatcatgcccaaagatatccagct 436
>gb|AW065172.1|AW065172 ST40E09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST40E09, mRNA sequence
Length = 588
Score = 129 bits (65), Expect = 2e-028
Identities = 131/153 (85%)
Strand = Plus / Plus
Query: 236 gtgaagaagccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtac 295
||||||||||| ||||||| ||||||||| || || || || || |||||||| ||||||
Sbjct: 178 gtgaagaagcctcacaggttcaggcccggtaccgttgcccttcgtgagatccgaaagtac 237
Query: 296 cagaagagcacggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatc 355
||||||||||| |||||||| || | |||||||| |||||||||||||| | ||||||
Sbjct: 238 cagaagagcacagagctgctcattagaaagttgccattccagcgcctggtgagggagatc 297
Query: 356 gctcaggacttcaagacggatctgcggttccag 388
|| |||||||||||||| ||| || ||||||||
Sbjct: 298 gcccaggacttcaagacagatttgaggttccag 330
Score = 91.7 bits (46), Expect = 4e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 440 ctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaa 499
||||| |||||||||||||| || ||||| || || ||| | ||||||||||||||||||
Sbjct: 382 ctgtttgaggacaccaacctgtgtgccattcatgccaagagggtcaccatcatgcccaaa 441
Query: 500 gacatccagctcgcccgccgcatccg 525
|| ||||||||||| |||||||||||
Sbjct: 442 gatatccagctcgctcgccgcatccg 467
>gb|AW697638.1|AW697638 ST64G07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST64G07, mRNA sequence
Length = 390
Score = 129 bits (65), Expect = 2e-028
Identities = 168/204 (82%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 130 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 189
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || |||| || |||||||||||||||
Sbjct: 190 ccccacaggttcaggcccggtactgtagcccttcgtgaganncgaaagtaccagaagagc 249
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||||||
Sbjct: 250 acagagctgctgataagaaagttgccattccagcgcctggtaagggagatcgcccaggac 309
Query: 365 ttcaagacggatctgcggttccag 388
||| |||| ||| || | ||||||
Sbjct: 310 ttcnagacagatttgngnttccag 333
>gb|BF777480.1|BF777480 NXSI_069_A12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_A12 5' similar to Arabidopsis thaliana
sequence At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 312
Score = 129 bits (65), Expect = 2e-028
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 51 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 110
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || ||||| || |||||||||||||||
Sbjct: 111 ccccacaggttcaggcccggtactgttgcccttcgtgagatacgaaagtaccagaagagc 170
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| ||||||||| |||| | |||||||| ||||||
Sbjct: 171 acagagctgctgataagaaagttgccattccagcgcttggtaagggagatcgcccaggac 230
Query: 365 ttcaagacggatctgcggttccag 388
|||||||| ||| || | ||||||
Sbjct: 231 ttcaagacagatttgagnttccag 254
>gb|BE662379.1|BE662379 ST62/ST62E03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST62/ST62E03, mRNA sequence
Length = 457
Score = 127 bits (64), Expect = 8e-028
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 185 aagcagctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaag 244
|||||||| || || ||||| || ||||||| || ||| |||| || || |||||||||
Sbjct: 127 aagcagctggcaacaaaggcagctcggaagtctgctccggcgacaggaggagtgaagaag 186
Query: 245 ccccacaggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagc 304
|||||||||| ||||||||| || || || || || ||||| || |||||||||||||||
Sbjct: 187 ccccacaggttcaggcccggtactgttgcccttcgtgagatacgaaagtaccagaagagc 246
Query: 305 acggagctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggac 364
|| ||||||||||| | |||||||| ||||||||| |||| | |||||||| ||||||
Sbjct: 247 acagagctgctgataagaaagttgccattccagcgcttggtaagggagatcgcccaggac 306
Query: 365 ttcaagac 372
||||||||
Sbjct: 307 ttcaagac 314
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 483 tcaccatcatgcccaaagacatccagc 509
||||||||||||||||||| |||||||
Sbjct: 425 tcaccatcatgcccaaagatatccagc 451
>gb|BE662581.1|BE662581 ST88/ST88B09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST88/ST88B09, mRNA sequence
Length = 488
Score = 125 bits (63), Expect = 3e-027
Identities = 301/382 (78%)
Strand = Plus / Plus
Query: 141 cgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccacca 200
||||||| || ||||| || |||||||| || || || ||| | || |||||||| ||||
Sbjct: 29 cgaagcaaactgcccgtaaatccaccggtgggaaagcgccgaggaaacagctcgcaacca 88
Query: 201 aggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacaggc 260
|||| |||||||| || || ||| |||| ||||| ||||||||||| ||||| | | |
Sbjct: 89 aggctgcgaggaaatctgcaccggcgacgggcggagtgaagaagcctcacagattcnnnc 148
Query: 261 ccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatcc 320
| || || || || || || |||||||| || || ||||||||||||||||| | ||
Sbjct: 149 cgggtactgttgccctccgtgagatccgaaaatatcagaagagcacggagcttttaataa 208
Query: 321 ggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggatctgc 380
||||| ||||||||||||| || || | || || ||||||||||||||||||||||||
Sbjct: 209 ggaagctgcccttccagcgtctcgtgagagaaattgctcaggacttcaagacggatctga 268
Query: 381 ggttccagagccacgccgtcctggccctccaggaagccgccgaggcctacctcgtcggcc 440
|||||||| | ||||| ||| || || ||||| | ||||| || ||||| || |
Sbjct: 269 ggttccagtcctctgccgtggcggctctgcaagaagcnncggaggcgtatctcgtgggtc 328
Query: 441 tgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaag 500
| ||||||||||| ||||| |||||||| || || ||| | ||||| || ||||||||||
Sbjct: 329 tcttcgaggacactaacctgtgcgccatacatgcgaagagggtcactattatgcccaaag 388
Query: 501 acatccagctcgcccgccgcat 522
| || ||||| || ||||||||
Sbjct: 389 atattcagctggctcgccgcat 410
>gb|BF169853.1|BF169853 NXCI_127_B12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_127_B12 5' similar to Arabidopsis
thaliana sequence At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 443
Score = 123 bits (62), Expect = 1e-026
Identities = 191/234 (81%)
Strand = Plus / Plus
Query: 143 aagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccaccaag 202
|||||||| || ||||| || || || || ||||| ||| | |||||||| || ||||||
Sbjct: 37 aagcagacagctcgcaaatcaacaggcgggaaggcgccgaggaagcagctggcaaccaag 96
Query: 203 gcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacaggccc 262
|| ||| |||| || || ||| | || || || ||||||||||| ||||| | ||||||
Sbjct: 97 gctgcgcggaaatctgccccggcaacgggaggagtgaagaagcctcacagattcaggcct 156
Query: 263 gggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatccgg 322
|| || || || || || || ||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 157 ggtaccgttgcccttcgtgaaatccgaaagtaccagaagagcaccgagctgctgataagg 216
Query: 323 aagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggat 376
||| |||| ||||||||| ||||| | ||||| |||||||||||||||||||||
Sbjct: 217 aagctgccattccagcgcttggtcagggagattgctcaggacttcaagacggat 270
Score = 46.1 bits (23), Expect = 0.002
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 485 accatcatgcccaaagacatccagctcgcccgccgcatccg 525
|||||||||||||| ||||| || |||| |||||||||||
Sbjct: 379 accatcatgcccaaggacattcanntcgctcgccgcatccg 419
>gb|BG040139.1|BG040139 NXSI_106_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_G07 5' similar to Arabidopsis thaliana
sequence At5g65360 histone H3 (sp|P05203) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 123 bits (62), Expect = 1e-026
Identities = 191/234 (81%)
Strand = Plus / Plus
Query: 143 aagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccaccaag 202
|||||||| || ||||| || || || || ||||| ||| | |||||||| || ||||||
Sbjct: 44 aagcagacagctcgcaaatcaacaggcgggaaggcgccgaggaagcagctggcaaccaag 103
Query: 203 gcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacaggccc 262
|| ||| |||| || || ||| | || || || ||||||||||| ||||| | ||||||
Sbjct: 104 gctgcgcggaaatctgccccggcaacgggaggagtgaagaagcctcacagattcaggcct 163
Query: 263 gggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatccgg 322
|| || || || || || || ||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 164 ggtaccgttgcccttcgtgaaatccgaaagtaccagaagagcaccgagctgctgataagg 223
Query: 323 aagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggat 376
||| |||| ||||||||| ||||| | ||||| |||||||||||||||||||||
Sbjct: 224 aagctgccattccagcgcttggtcagggagattgctcaggacttcaagacggat 277
Score = 61.9 bits (31), Expect = 4e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 443 ttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaagac 502
|||||||| || ||||| || || ||||| || ||| | || |||||||||||||| |||
Sbjct: 344 ttcgaggatactaacctgtgtgcaatccatgccaagagggtgaccatcatgcccaaggac 403
Query: 503 atccagctcgcccgccgcatccg 525
|| |||||||| |||||||||||
Sbjct: 404 attcagctcgctcgccgcatccg 426
>gb|CF401959.1|CF401959 RTWW1_16_C06.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_C06_A015 3', mRNA sequence
Length = 541
Score = 123 bits (62), Expect = 1e-026
Identities = 191/234 (81%)
Strand = Plus / Minus
Query: 143 aagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcagctcgccaccaag 202
|||||||| || ||||| || || || || ||||| ||| | |||||||| || ||||||
Sbjct: 499 aagcagacagctcgcaaatcaacaggcggaaaggcgccgaggaagcagctggcaaccaag 440
Query: 203 gcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccacaggtacaggccc 262
|| ||| |||| || || ||| | || || || ||||||||||| ||||| | ||||||
Sbjct: 439 gctgcgcggaaatctgccccggcaacgggaggagtgaagaagcctcacagattcaggcct 380
Query: 263 gggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggagctgctgatccgg 322
|| || || || || || || ||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 379 ggtaccgttgcccttcgtgaaatccgaaagtaccagaagagcaccgagctgctgataagg 320
Query: 323 aagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaagacggat 376
||| |||| ||||||||| ||||| | ||||| |||||||||||||||||||||
Sbjct: 319 aagctgccattccagcgcttggtcagggagattgctcaggacttcaagacggat 266
Score = 61.9 bits (31), Expect = 4e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 443 ttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaagac 502
|||||||| || ||||| || || ||||| || ||| | || |||||||||||||| |||
Sbjct: 199 ttcgaggatactaacctgtgtgcaatccatgccaagagggtgaccatcatgcccaaggac 140
Query: 503 atccagctcgcccgccgcatccg 525
|| |||||||| |||||||||||
Sbjct: 139 attcagctcgctcgccgcatccg 117
>gb|CF385277.1|CF385277 RTDR1_3_F08.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_F08_A015 3', mRNA
sequence
Length = 503
Score = 121 bits (61), Expect = 5e-026
Identities = 247/309 (79%)
Strand = Plus / Plus
Query: 227 accggcggcgtgaagaagccccacaggtacaggcccgggacggtggcgctgcgcgagatc 286
||||| ||||| |||||||| ||| | |||| |||||| || || || || || ||||||
Sbjct: 1 accggtggcgtcaagaagcctcaccgctacaagcccggtaccgtcgctctccgtgagatc 60
Query: 287 cgcaagtaccagaagagcacggagctgctgatccggaagttgcccttccagcgcctggtc 346
|| ||||||||| || ||||| |||||||| ||| |||||||||||||||||||
Sbjct: 61 cgtcgctaccagaagtcgactgagctcctgatccgcaagctgcccttccagcgcctggtt 120
Query: 347 cgtgagatcgctcaggacttcaagacggatctgcggttccagagccacgccgtcctggcc 406
|||||||| || |||||||||||| | ||||| || |||||| ||| || |||
Sbjct: 121 cgtgagattgcccaggacttcaagtctgatctccgcttccagtcgtctgccatcggcgcc 180
Query: 407 ctccaggaagccgccgaggcctacctcgtcggcctgttcgaggacaccaacctctgcgcc 466
|||||||| | | |||| ||||||||||| || ||||||||||||||||| ||||||
Sbjct: 181 ctccaggagtcggtcgagtcctacctcgtctcgctcttcgaggacaccaacctgtgcgcc 240
Query: 467 atccacgcaaagcgcgtcaccatcatgcccaaagacatccagctcgcccgccgcatccgc 526
|||||||| ||||||||||| ||| | |||| ||||||||||| || || ||| | ||
Sbjct: 241 atccacgccaagcgcgtcacgatccagtccaaggacatccagctggctcgtcgcctgcgt 300
Query: 527 ggcgagcgc 535
|||||||||
Sbjct: 301 ggcgagcgc 309
>gb|BQ699538.1|BQ699538 NXRV123_E11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV123_E11 5' similar to Arabidopsis thaliana
sequence At5g10980 histon H3 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 595
Score = 119 bits (60), Expect = 2e-025
Identities = 300/380 (78%)
Strand = Plus / Plus
Query: 131 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 190
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 92 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 151
Query: 191 ctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccac 250
||||| || ||||| || | || || ||||| |||||||| || ||||||||||| ||
Sbjct: 152 ctcgcaacaaaggctgctcgtaaatctgcgcctacgaccggaggtgtgaagaagcctcat 211
Query: 251 aggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggag 310
|| || | ||||| || || || || || || || || ||||| |||||||||||||||
Sbjct: 212 agatatcgtcccggaacagttgctcttcgagaaattcgaaagtatcagaagagcacggag 271
Query: 311 ctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaag 370
|||| || || ||| |||| || || | || || | || || || ||||||||||||
Sbjct: 272 ttgctaattcgaaagctgccatttcaaaggcttgtgagggaaattgcccaggacttcaag 331
Query: 371 acggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcctac 430
||||||||||| || ||||| || || || |||| || ||||| || || ||||||||
Sbjct: 332 acggatctgcgatttcagagtcatgctgttttggcacttcaggaggctgcagaggcctat 391
Query: 431 ctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatc 490
|| ||||| ||||| || || || || ||||||||||| || |||||| | || ||||||
Sbjct: 392 cttgtcggtctgtttgaagatactaatctctgcgccatacatgcaaagagggtgaccatc 451
Query: 491 atgcccaaagacatccagct 510
||||| |||||||| |||||
Sbjct: 452 atgccgaaagacattcagct 471
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 28 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 87
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 92 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 151
Query: 88 ctcgca 93
||||||
Sbjct: 152 ctcgca 157
>gb|BQ702716.1|BQ702716 NXSI_131_G04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_131_G04 5' similar to Arabidopsis thaliana
sequence At5g10980 histon H3 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 119 bits (60), Expect = 2e-025
Identities = 300/380 (78%)
Strand = Plus / Plus
Query: 131 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 190
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 17 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 76
Query: 191 ctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccac 250
||||| || ||||| || | || || ||||| |||||||| || ||||||||||| ||
Sbjct: 77 ctcgcaacaaaggctgctcgtaaatctgcgcctacgaccggaggtgtgaagaagcctcat 136
Query: 251 aggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggag 310
|| || | ||||| || || || || || || || || ||||| |||||||||||||||
Sbjct: 137 agatatcgtcccggaacagttgctcttcgagaaattcgaaagtatcagaagagcacggag 196
Query: 311 ctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaag 370
|||| || || ||| |||| || || | || || | || || || ||||||||||||
Sbjct: 197 ttgctaattcgaaagctgccatttcaaaggcttgtgagggaaattgcccaggacttcaag 256
Query: 371 acggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcctac 430
||||||||||| || ||||| || || || |||| || ||||| || || ||||||||
Sbjct: 257 acggatctgcgatttcagagtcatgctgttttggcacttcaggaggctgcagaggcctat 316
Query: 431 ctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatc 490
|| ||||| ||||| || || || || ||||||||||| || |||||| | || ||||||
Sbjct: 317 cttgtcggtctgtttgaagatactaatctctgcgccatacatgcaaagagggtgaccatc 376
Query: 491 atgcccaaagacatccagct 510
||||| |||||||| |||||
Sbjct: 377 atgccgaaagacattcagct 396
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 28 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 87
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 17 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 76
Query: 88 ctcgca 93
||||||
Sbjct: 77 ctcgca 82
>gb|CF396124.1|CF396124 RTDS2_13_B09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_13_B09_A021 5', mRNA sequence
Length = 719
Score = 119 bits (60), Expect = 2e-025
Identities = 300/380 (78%)
Strand = Plus / Plus
Query: 131 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 190
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 338 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 397
Query: 191 ctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccac 250
||||| || ||||| || | || || ||||| |||||||| || ||||||||||| ||
Sbjct: 398 ctcgcaacaaaggctgctcgtaaatctgcgcctacgaccggaggtgtgaagaagcctcat 457
Query: 251 aggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggag 310
|| || | ||||| || || || || || || || || ||||| |||||||||||||||
Sbjct: 458 agatatcgtcccggaacagttgctcttcgagaaattcgaaagtatcagaagagcacggag 517
Query: 311 ctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaag 370
|||| || || ||| |||| || || | || || | || || || ||||||||||||
Sbjct: 518 ttgctaattcgaaagctgccatttcaaaggcttgtgagggaaattgcccaggacttcaag 577
Query: 371 acggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcctac 430
||||||||||| || ||||| || || || |||| || ||||| || || ||||||||
Sbjct: 578 acggatctgcgatttcagagtcatgctgttttggcacttcaggaggctgcagaggcctat 637
Query: 431 ctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatc 490
|| ||||| ||||| || || || || ||||||||||| || |||||| | || ||||||
Sbjct: 638 cttgtcggtctgtttgaagatactaatctctgcgccatacatgcaaagagggtgaccatc 697
Query: 491 atgcccaaagacatccagct 510
||||| |||||||| |||||
Sbjct: 698 atgccgaaagacattcagct 717
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 28 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 87
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 338 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 397
Query: 88 ctcgca 93
||||||
Sbjct: 398 ctcgca 403
>gb|CF399469.1|CF399469 RTDS3_28_H04.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_H04_A022 5', mRNA sequence
Length = 766
Score = 119 bits (60), Expect = 2e-025
Identities = 300/380 (78%)
Strand = Plus / Plus
Query: 131 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 190
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 67 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 126
Query: 191 ctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccac 250
||||| || ||||| || | || || ||||| |||||||| || ||||||||||| ||
Sbjct: 127 ctcgcaacaaaggctgctcgtaaatctgcgcctacgaccggaggtgtgaagaagcctcat 186
Query: 251 aggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggag 310
|| || | ||||| || || || || || || || || ||||| |||||||||||||||
Sbjct: 187 agatatcgtcccggaacagttgctcttcgagaaattcgaaagtatcagaagagcacggag 246
Query: 311 ctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaag 370
|||| || || ||| |||| || || | || || | || || || ||||||||||||
Sbjct: 247 ttgctaattcgaaagctgccatttcaaaggcttgtgagggaaattgcccaggacttcaag 306
Query: 371 acggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcctac 430
||||||||||| || ||||| || || || |||| || ||||| || || ||||||||
Sbjct: 307 acggatctgcgatttcagagtcatgctgttttggcacttcaggaggctgcagaggcctat 366
Query: 431 ctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatc 490
|| ||||| ||||| || || || || ||||||||||| || |||||| | || ||||||
Sbjct: 367 cttgtcggtctgtttgaagatactaatctctgcgccatacatgcaaagagggtgaccatc 426
Query: 491 atgcccaaagacatccagct 510
||||| |||||||| |||||
Sbjct: 427 atgccgaaagacattcagct 446
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 28 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 87
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 67 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 126
Query: 88 ctcgca 93
||||||
Sbjct: 127 ctcgca 132
>gb|CF471151.1|CF471151 RTDS1_16_H02.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_16_H02_A015 5', mRNA sequence
Length = 676
Score = 119 bits (60), Expect = 2e-025
Identities = 300/380 (78%)
Strand = Plus / Plus
Query: 131 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 190
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 233 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 292
Query: 191 ctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagccccac 250
||||| || ||||| || | || || ||||| |||||||| || ||||||||||| ||
Sbjct: 293 ctcgcaacaaaggctgctcgtaaatctgcgcctacgaccggaggtgtgaagaagcctcat 352
Query: 251 aggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacggag 310
|| || | ||||| || || || || || || || || ||||| |||||||||||||||
Sbjct: 353 agatatcgtcccggaacagttgctcttcgagaaattcgaaagtatcagaagagcacggag 412
Query: 311 ctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaag 370
|||| || || ||| |||| || || | || || | || || || ||||||||||||
Sbjct: 413 ttgctaattcgaaagctgccatttcaaaggcttgtgagggaaattgcccaggacttcaag 472
Query: 371 acggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggcctac 430
||||||||||| || ||||| || || || |||| || ||||| || || ||||||||
Sbjct: 473 acggatctgcgatttcagagtcatgctgttttggcacttcaggaggctgcagaggcctat 532
Query: 431 ctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatc 490
|| ||||| ||||| || || || || ||||||||||| || |||||| | || ||||||
Sbjct: 533 cttgtcggtctgtttgaagatactaatctctgcgccatacatgcaaagagggtgaccatc 592
Query: 491 atgcccaaagacatccagct 510
||||| |||||||| |||||
Sbjct: 593 atgccgaaagacattcagct 612
Score = 60.0 bits (30), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 28 atggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagcag 87
|||||||||||||||||||| || || || || |||||||| ||||| ||| | ||||||
Sbjct: 233 atggctcgtacgaagcagacagcacgaaaatctaccggaggaaaggctccgaggaagcag 292
Query: 88 ctcgca 93
||||||
Sbjct: 293 ctcgca 298
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,811
Number of Sequences: 355925
Number of extensions: 85811
Number of successful extensions: 26793
Number of sequences better than 0.5: 409
Number of HSP's better than 0.5 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25571
Number of HSP's gapped (non-prelim): 1159
length of query: 834
length of database: 217,277,237
effective HSP length: 19
effective length of query: 815
effective length of database: 210,514,662
effective search space: 171569449530
effective search space used: 171569449530
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)