BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.203
         (959 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF389413.1|CF389413  RTDR2_7_C08.b1_A021 Loblolly pine ro...    42   0.041
gb|BQ655302.1|BQ655302  NXRV092_F09_F NXRV (Nsf Xylem Root w...    40   0.16 

>gb|CF389413.1|CF389413 RTDR2_7_C08.b1_A021 Loblolly pine roots recovering from drought DR2
           Pinus taeda cDNA clone RTDR2_7_C08_A021 3', mRNA
           sequence
          Length = 485

 Score = 42.1 bits (21), Expect = 0.041
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 274 tggaaatggaaatggaatgggatgg 298
           |||| ||||||||||||||||||||
Sbjct: 354 tggacatggaaatggaatgggatgg 378



>gb|BQ655302.1|BQ655302 NXRV092_F09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
           clone NXRV092_F09 5', mRNA sequence
          Length = 711

 Score = 40.1 bits (20), Expect = 0.16
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 273 gtggaaatggaaatggaatgggat 296
           ||||||| ||||||||||||||||
Sbjct: 283 gtggaaaaggaaatggaatgggat 260



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,675
Number of Sequences: 355925
Number of extensions: 72675
Number of successful extensions: 17595
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17593
Number of HSP's gapped (non-prelim): 2
length of query: 959
length of database: 217,277,237
effective HSP length: 19
effective length of query: 940
effective length of database: 210,514,662
effective search space: 197883782280
effective search space used: 197883782280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)