BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root w... 38 0.50
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 38 0.50
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 38 0.50
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 38 0.50
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 38 0.50
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 38 0.50
>gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_D02 5' similar to Arabidopsis thaliana
sequence At1g69440 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 79 caatgttcttcctggaactgtggtgga 105
|||||||| |||||| |||||||||||
Sbjct: 219 caatgttcctcctggcactgtggtgga 245
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 79 caatgttcttcctggaactgtggtgga 105
|||||||| |||||| |||||||||||
Sbjct: 85 caatgttcctcctggcactgtggtgga 111
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 79 caatgttcttcctggaactgtggtgga 105
|||||||| |||||| |||||||||||
Sbjct: 466 caatgttcctcctggcactgtggtgga 440
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 79 caatgttcttcctggaactgtggtgga 105
|||||||| |||||| |||||||||||
Sbjct: 719 caatgttcctcctggcactgtggtgga 693
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 79 caatgttcttcctggaactgtggtgga 105
|||||||| |||||| |||||||||||
Sbjct: 33 caatgttcctcctggcactgtggtgga 59
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 79 caatgttcttcctggaactgtggtgga 105
|||||||| |||||| |||||||||||
Sbjct: 580 caatgttcctcctggcactgtggtgga 606
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,113
Number of Sequences: 355925
Number of extensions: 76113
Number of successful extensions: 20016
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20010
Number of HSP's gapped (non-prelim): 6
length of query: 744
length of database: 217,277,237
effective HSP length: 19
effective length of query: 725
effective length of database: 210,514,662
effective search space: 152623129950
effective search space used: 152623129950
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)