BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF478186.1|CF478186 RTWW3_19_E06.g1_A022 Well-watered lo... 123 1e-026
gb|BX682564.1|BX682564 BX682564 Pinus pinaster differenciat... 123 1e-026
gb|CO175842.1|CO175842 NDL1_57_A05.g1_A029 Needles control ... 123 1e-026
gb|CO363133.1|CO363133 RTK1_7_G06.g1_A029 Roots minus potas... 123 1e-026
gb|CO363696.1|CO363696 RTK1_11_F12.b1_A029 Roots minus pota... 123 1e-026
gb|CO363785.1|CO363785 RTK1_11_F12.g1_A029 Roots minus pota... 123 1e-026
gb|CO366493.1|CO366493 RTK1_28_E02.b1_A029 Roots minus pota... 123 1e-026
gb|DR101422.1|DR101422 STRR1_73_B05.b1_A033 Stem Response R... 121 5e-026
gb|CF670504.1|CF670504 RTCNT1_50_D12.g1_A029 Root control P... 115 3e-024
gb|CO171695.1|CO171695 NDL1_23_G04.g1_A029 Needles control ... 115 3e-024
gb|CO364850.1|CO364850 RTK1_22_E03.b1_A029 Roots minus pota... 115 3e-024
gb|CO364935.1|CO364935 RTK1_22_E03.g1_A029 Roots minus pota... 115 3e-024
gb|CX652009.1|CX652009 COLD1_56_G01.b1_A029 Root cold Pinus... 115 3e-024
gb|CX652078.1|CX652078 COLD1_56_G01.g1_A029 Root cold Pinus... 115 3e-024
gb|DR686009.1|DR686009 EST1076086 Normalized pine embryo li... 115 3e-024
gb|DR745688.1|DR745688 RTCU1_31_D11.g1_A029 Roots plus adde... 115 3e-024
gb|DT632958.1|DT632958 EST1147889 Normalized pine embryo li... 115 3e-024
gb|CR393042.1|CR393042 CR393042 RN Pinus pinaster cDNA clon... 101 5e-020
gb|CF397323.1|CF397323 RTDS3_2_H02.g1_A022 Drought-stressed... 100 2e-019
gb|CF670430.1|CF670430 RTCNT1_50_D12.b1_A029 Root control P... 100 2e-019
gb|CO197709.1|CO197709 GEO1_8_A12.g1_A029 Root gravitropism... 90 2e-016
gb|BQ196920.1|BQ196920 NXLV107_A12_F NXLV (Nsf Xylem Late w... 72 4e-011
gb|CO362062.1|CO362062 NDL2_8_H12.g1_A029 Needles control 2... 72 4e-011
gb|BX250783.1|BX250783 BX250783 Pinus pinaster differenciat... 66 3e-009
gb|BM157918.1|BM157918 NXLV_027_A10_F NXLV (Nsf Xylem Late ... 66 3e-009
gb|CF478135.1|CF478135 RTWW3_19_E06.b1_A022 Well-watered lo... 66 3e-009
gb|CO175778.1|CO175778 NDL1_57_A05.b1_A029 Needles control ... 66 3e-009
gb|CO363046.1|CO363046 RTK1_7_G06.b1_A029 Roots minus potas... 66 3e-009
gb|DR013882.1|DR013882 HEAT1_22_D04.b1_A029 Root at 37 C fo... 64 1e-008
gb|DR013966.1|DR013966 HEAT1_22_D04.g1_A029 Root at 37 C fo... 64 1e-008
gb|CO197650.1|CO197650 GEO1_8_A12.b1_A029 Root gravitropism... 60 2e-007
gb|AW626672.1|AW626672 NXNV068C04 Nsf Xylem Normal wood Ver... 58 6e-007
>gb|CF478186.1|CF478186 RTWW3_19_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_E06_A022 5', mRNA sequence
Length = 732
Score = 123 bits (62), Expect = 1e-026
Identities = 215/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 490 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 431
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 430 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 371
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 370 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 311
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 310 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 251
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 250 ctcttgcagagcttcttccctgcgag 225
>gb|BX682564.1|BX682564 BX682564 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 118A06 similar to Coatomer beta' subunit,
mRNA sequence
Length = 622
Score = 123 bits (62), Expect = 1e-026
Identities = 215/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||| |||||||||
Sbjct: 295 caacatgttggcctcttagtggctcctgcacccgcaagatcctcttttgaaggaacatat 236
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 235 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 176
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 175 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 116
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 115 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 56
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 55 ctcttgcagagcttcttccctgcgag 30
>gb|CO175842.1|CO175842 NDL1_57_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_57_A05_A029 5', mRNA sequence
Length = 755
Score = 123 bits (62), Expect = 1e-026
Identities = 215/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 482 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 423
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 422 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 363
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 362 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 303
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 302 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 243
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 242 ctcttgcagagcttcttccctgcgag 217
>gb|CO363133.1|CO363133 RTK1_7_G06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_G06_A029 5', mRNA sequence
Length = 813
Score = 123 bits (62), Expect = 1e-026
Identities = 215/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 491 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 432
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 431 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 372
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 371 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 312
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 311 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 252
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 251 ctcttgcagagcttcttccctgcgag 226
>gb|CO363696.1|CO363696 RTK1_11_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_F12_A029 3', mRNA sequence
Length = 861
Score = 123 bits (62), Expect = 1e-026
Identities = 215/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 396 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 337
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 336 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 277
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 276 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 217
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 216 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 157
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 156 ctcttgcagagcttcttccctgcgag 131
>gb|CO363785.1|CO363785 RTK1_11_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_F12_A029 5', mRNA sequence
Length = 803
Score = 123 bits (62), Expect = 1e-026
Identities = 215/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 582 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 523
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 522 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 463
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 462 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 403
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 402 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 343
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 342 ctcttgcagagcttcttccctgcgag 317
>gb|CO366493.1|CO366493 RTK1_28_E02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_E02_A029 3', mRNA sequence
Length = 860
Score = 123 bits (62), Expect = 1e-026
Identities = 215/266 (80%)
Strand = Plus / Plus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 373 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 432
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 433 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 492
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 493 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 552
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 553 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 612
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 613 ctcttgcagagcttcttccctgcgag 638
>gb|DR101422.1|DR101422 STRR1_73_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_73_B05_A033 3', mRNA sequence
Length = 722
Score = 121 bits (61), Expect = 5e-026
Identities = 208/257 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 262 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 203
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 202 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 143
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 142 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 83
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 82 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 23
Query: 740 cgcttgcagagcttctt 756
| |||||||||||||||
Sbjct: 22 ctcttgcagagcttctt 6
>gb|CF670504.1|CF670504 RTCNT1_50_D12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_50_D12_A029 5', mRNA sequence
Length = 746
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 433 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 374
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct: 373 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaattggt 314
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 313 gagatgttcccagcaataacacaaaatcctttatttccccgcctgatggacttcaccact 254
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
|||||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 253 tctttgaccccgcgcttcaaacacttggcctcggaagcgcgtcgaacgagcttgagggtt 194
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 193 ctcttgcagagcttcttccccgcgag 168
>gb|CO171695.1|CO171695 NDL1_23_G04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_23_G04_A029 5', mRNA sequence
Length = 760
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Plus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 368 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 427
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct: 428 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaattggt 487
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 488 gagatgttcccagcaataacacaaaatcctttatttccccgcctgatggacttcaccact 547
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
|||||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 548 tctttgaccccgcgcttcaaacacttggcctcggaagcgcgtcgaacgagcttgagggtt 607
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 608 ctcttgcagagcttcttccccgcgag 633
>gb|CO364850.1|CO364850 RTK1_22_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_E03_A029 3', mRNA sequence
Length = 860
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Plus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 358 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 417
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct: 418 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaattggt 477
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 478 gagatgttcccagcaataacacaaaatcctttatttccccgcctgatggacttcaccact 537
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
|||||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 538 tctttgaccccgcgcttcaaacacttggcctcggaagcgcgtcgaacgagcttgagggtt 597
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 598 ctcttgcagagcttcttccccgcgag 623
>gb|CO364935.1|CO364935 RTK1_22_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_E03_A029 5', mRNA sequence
Length = 857
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Plus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 360 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 419
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct: 420 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaattggt 479
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 480 gagatgttcccagcaataacacaaaatcctttatttccccgcctgatggacttcaccact 539
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
|||||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 540 tctttgaccccgcgcttcaaacacttggcctcggaagcgcgtcgaacgagcttgagggtt 599
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 600 ctcttgcagagcttcttccccgcgag 625
>gb|CX652009.1|CX652009 COLD1_56_G01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_56_G01_A029 3', mRNA sequence
Length = 844
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 434 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 375
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 374 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 315
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 314 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 255
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||| ||||||||||
Sbjct: 254 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgggcttgagggtt 195
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 194 ctcttgcagagcttcttccctgcgag 169
>gb|CX652078.1|CX652078 COLD1_56_G01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_56_G01_A029 5', mRNA sequence
Length = 845
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 532 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 473
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 472 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 413
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 412 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 353
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||| ||||||||||
Sbjct: 352 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgggcttgagggtt 293
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 292 ctcttgcagagcttcttccctgcgag 267
>gb|DR686009.1|DR686009 EST1076086 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABB14 3' end, mRNA sequence
Length = 794
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 611 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 552
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 551 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 492
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 491 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 432
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 431 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 372
Query: 740 cgcttgcagagcttctttccagcgag 765
| |||| |||||||||| || |||||
Sbjct: 371 ctcttgtagagcttcttccctgcgag 346
>gb|DR745688.1|DR745688 RTCU1_31_D11.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_31_D11_A029 5', mRNA sequence
Length = 766
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 550 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 491
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct: 490 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaattggt 431
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 430 gagatgttcccagcaataacacaaaatcctttatttccccgcctgatggacttcaccact 371
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
|||||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 370 tctttgaccccgcgcttcaaacacttggcctcggaagcgcgtcgaacgagcttgagggtt 311
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 310 ctcttgcagagcttcttccccgcgag 285
>gb|DT632958.1|DT632958 EST1147889 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFP60 3' end, mRNA sequence
Length = 805
Score = 115 bits (58), Expect = 3e-024
Identities = 214/266 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 619 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 560
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 559 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 500
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 499 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 440
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 439 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 380
Query: 740 cgcttgcagagcttctttccagcgag 765
| |||| |||||||||| || |||||
Sbjct: 379 ctcttgtagagcttcttccctgcgag 354
>gb|CR393042.1|CR393042 CR393042 RN Pinus pinaster cDNA clone RN51H02, mRNA sequence
Length = 548
Score = 101 bits (51), Expect = 5e-020
Identities = 192/239 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||| |||||||||
Sbjct: 240 caacatgttggcctcttagtggctcctgcacccgcaagatcctcttttgaaggaacatat 181
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| | ||||| ||||| | || || |||||||| || |||||||| ||
Sbjct: 180 atatatggaatgtcggcttcttcacacaaaataggtacatgtgtgattacatcaattggt 121
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 120 gagatgttcccagcaataacacaaaatcctttctttccccgcctgatggacttcaccact 61
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggt 738
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 60 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggt 2
>gb|CF397323.1|CF397323 RTDS3_2_H02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_H02_A022 5', mRNA sequence
Length = 754
Score = 99.6 bits (50), Expect = 2e-019
Identities = 212/266 (79%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 471 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 412
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| |||| || || || |||||||| || |||||||| ||
Sbjct: 411 atatatggaatatcggcttcttcacgcagaataggtacatgtgtgataacatcaattggt 352
Query: 620 gaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacc 679
|| || || ||||| || ||||| |||||||| || || || | ||| || || ||
Sbjct: 351 gagatgttcccagcaataacacaaaatcctttatttccccgcctgatggatttcaccact 292
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
|||||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 291 tctttgaccccgcgcttcaaacacttggcctcggaagcgcgtcgaacgagcttgagggtt 232
Query: 740 cgcttgcagagcttctttccagcgag 765
| ||||||||||||||| || |||||
Sbjct: 231 ctcttgcagagcttcttccccgcgag 206
>gb|CF670430.1|CF670430 RTCNT1_50_D12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_50_D12_A029 3', mRNA sequence
Length = 666
Score = 99.6 bits (50), Expect = 2e-019
Identities = 207/258 (80%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 261 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 202
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaa-tagg 618
| || |||| || ||||| ||||| || || || |||||||| || ||||||| | ||
Sbjct: 201 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaanttgg 142
Query: 619 agaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactac 678
|| || || ||||| || ||||| |||||||| || || || | ||| ||| || ||
Sbjct: 141 tgagatgttcccagcaataacacaaaatcctttatttccccgcctgatggacttcaccac 82
Query: 679 ctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggt 738
|||||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||||
Sbjct: 81 ttctttgaccccgcgcttcaaacacttggcctcggaagcgcgtcgaacgagcttgagggt 22
Query: 739 ccgcttgcagagcttctt 756
| |||||||||||||||
Sbjct: 21 tctcttgcagagcttctt 4
>gb|CO197709.1|CO197709 GEO1_8_A12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_8_A12_A029 5', mRNA sequence
Length = 425
Score = 89.7 bits (45), Expect = 2e-016
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 680 tctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtc 739
||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 294 tctttgactccgcgcttcaaacacttagcctcggaagctcgtcgaacgagcttgagggtt 235
Query: 740 cgcttgcagagcttctt 756
| |||||||||||||||
Sbjct: 234 ctcttgcagagcttctt 218
>gb|BQ196920.1|BQ196920 NXLV107_A12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV107_A12 5' similar to Arabidopsis thaliana
sequence At5g08180 nhp2-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 71.9 bits (36), Expect = 4e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 175 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 116
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct: 115 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaattggt 56
Query: 620 gaaatatttccagcgatcacacacaatccttt 651
|| || || ||||| || ||||| ||||||||
Sbjct: 55 gagatgttcccagcaataacacaaaatccttt 24
>gb|CO362062.1|CO362062 NDL2_8_H12.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_H12_A029 5', mRNA sequence
Length = 806
Score = 71.9 bits (36), Expect = 4e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 581 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 522
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
| || |||| || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct: 521 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaattggt 462
Query: 620 gaaatatttccagcgatcacacacaatccttt 651
|| || || ||||| || ||||| ||||||||
Sbjct: 461 gagatgttcccagcaataacacaaaatccttt 430
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 719 cgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgag 765
||||| |||||||||||||| | ||||||||||||||| || |||||
Sbjct: 274 cgtcgaacgagcttgagggttctcttgcagagcttcttccccgcgag 228
>gb|BX250783.1|BX250783 BX250783 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041C01, mRNA sequence
Length = 520
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||| |||||||||
Sbjct: 115 caacatgttggcctcttagtggctcctgcacccgcaagatcctcttttgaaggaacatat 56
Query: 560 a 560
|
Sbjct: 55 a 55
>gb|BM157918.1|BM157918 NXLV_027_A10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_027_A10 5' similar to Arabidopsis thaliana
sequence At5g08180 nhp2-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 502
Score = 65.9 bits (33), Expect = 3e-009
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 682 tttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtccg 741
|||||| |||||||| | ||||| |||||||| || ||||| ||||||||||||| |
Sbjct: 395 tttgaccccgcgcttcaaacacttngcctcggaagcgcgtcgaacgagcttgagggctct 336
Query: 742 cttgcagagcttctttccagcgag 765
||||||||||||||| || |||||
Sbjct: 335 cttgcagagcttcttccccgcgag 312
>gb|CF478135.1|CF478135 RTWW3_19_E06.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_E06_A022 3', mRNA sequence
Length = 640
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 172 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 113
Query: 560 a 560
|
Sbjct: 112 a 112
>gb|CO175778.1|CO175778 NDL1_57_A05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_57_A05_A029 3', mRNA sequence
Length = 670
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 196 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 137
Query: 560 a 560
|
Sbjct: 136 a 136
>gb|CO363046.1|CO363046 RTK1_7_G06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_G06_A029 3', mRNA sequence
Length = 658
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 210 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacatat 151
Query: 560 a 560
|
Sbjct: 150 a 150
>gb|DR013882.1|DR013882 HEAT1_22_D04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_D04_A029 3', mRNA sequence
Length = 714
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 260 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 201
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaat 615
| || |||| || ||||| ||||| || || || |||||||| || ||||||||
Sbjct: 200 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaat 145
>gb|DR013966.1|DR013966 HEAT1_22_D04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_D04_A029 5', mRNA sequence
Length = 831
Score = 63.9 bits (32), Expect = 1e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatat 559
||||| || ||||||||||| | |||||| |||||||||||||||||| |||||||||
Sbjct: 434 caacatgttggcctcttagtagctcctgcacccgcaagatcctcttttgacggaacatat 375
Query: 560 acgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaat 615
| || |||| || ||||| ||||| || || || |||||||| || ||||||||
Sbjct: 374 atatatggaatatcggcttcttcacacagaataggtacatgtgtgataacatcaat 319
>gb|CO197650.1|CO197650 GEO1_8_A12.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_8_A12_A029 3', mRNA sequence
Length = 505
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 500 caacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
||||| || ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 79 caacatgttggcctcttagtggctcctgcacctgcaagatcctcttttgatggaacat 22
>gb|AW626672.1|AW626672 NXNV068C04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV068C04 5' similar to Arabidopsis thaliana sequence
At5g08180 nhp2-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 58.0 bits (29), Expect = 6e-007
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 683 ttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtccgc 742
||||| |||||||| | ||||| | ||||| || ||||| |||||||||||||| | |
Sbjct: 395 ttgaccccgcgcttcaaacacttggnntcggaagcgcgtcgaacgagcttgagggttctc 336
Query: 743 ttgcagagcttctttccagcgag 765
|||||||||||||| || |||||
Sbjct: 335 ttgcagagcttcttccccgcgag 313
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,262
Number of Sequences: 355925
Number of extensions: 84262
Number of successful extensions: 23533
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23462
Number of HSP's gapped (non-prelim): 56
length of query: 878
length of database: 217,277,237
effective HSP length: 19
effective length of query: 859
effective length of database: 210,514,662
effective search space: 180832094658
effective search space used: 180832094658
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)