BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA... 597 e-168
dbj|AP004682.1| Oryza sativa (japonica cultivar-group) chro... 224 4e-056
dbj|AP003510.3| Oryza sativa (japonica cultivar-group) geno... 224 4e-056
gb|AACV01013222.1| Oryza sativa (japonica cultivar-group) c... 224 4e-056
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 224 4e-056
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 224 4e-056
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 224 4e-056
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 224 4e-056
dbj|AK103280.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|CB639520.1|CB639520 OSJNEa10P12.f OSJNEa Oryza sativa (j... 50 0.001
dbj|AK070569.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AACV01010647.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|XM_464221.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 50 0.001
ref|XM_506725.1| PREDICTED Oryza sativa (japonica cultivar-... 50 0.001
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC... 50 0.001
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP004093.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP004863.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01003410.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.023
dbj|AG024751.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.089
gb|C98780.1|C98780 C98780 Rice panicle at flowering stage O... 44 0.089
dbj|AK065025.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.089
dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.089
dbj|AK103312.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.089
dbj|AK121703.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.089
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 44 0.089
dbj|AP004324.2| Oryza sativa (japonica cultivar-group) geno... 44 0.089
dbj|AP003726.3| Oryza sativa (japonica cultivar-group) geno... 44 0.089
gb|AACV01014877.1| Oryza sativa (japonica cultivar-group) c... 44 0.089
ref|XM_474307.1| Oryza sativa (japonica cultivar-group), p... 44 0.089
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.089
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 42 0.35
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 42 0.35
gb|AACV01025520.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
>dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125L14, full
insert sequence
Length = 4166
Score = 597 bits (301), Expect = e-168
Identities = 447/496 (90%)
Strand = Plus / Minus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 1866 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 1807
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 1806 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 1747
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctggcattcctgcttgcttag 205
| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct: 1746 tggctcttttgaaagcactctcaacttcattttcatcatctggcattcctggctgcttag 1687
Query: 206 gaagctttggcctgaaaaatggtggtgggcatatataaaatggtgtagcaactggttcaa 265
|||| ||||||||||||||||||||||| || |||||||| ||||| || ||||||||||
Sbjct: 1686 gaagttttggcctgaaaaatggtggtggacaaatataaaaaggtgtcgcgactggttcaa 1627
Query: 266 tctcccatatcgaaacacgggtgcgcctctcagatgcagtcgattcatcccaaccaacct 325
|||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct: 1626 tctcccatattgaaacacgagtgcgcctctcagatgctgttgattcatcccaaccaacct 1567
Query: 326 gaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcctgtga 385
||||||||||||||||||| |||| ||| |||| |||||| ||||| ||||| |||||||
Sbjct: 1566 gaaggtttcgccaatgagagttctcccagcgcactggatccaagtcaccaatacctgtga 1507
Query: 386 tcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaatcgca 445
| || ||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 1506 ttgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaaccgca 1447
Query: 446 ttccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgacaaatt 505
||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||||||
Sbjct: 1446 ttccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgacaaatt 1387
Query: 506 ctgatgggcntgccct 521
||||||| | ||||||
Sbjct: 1386 ctgatggacttgccct 1371
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1284 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 1237
>dbj|AP004682.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone
OSJNBb0026P21, *** SEQUENCING IN PROGRESS ***
Length = 100670
Score = 224 bits (113), Expect = 4e-056
Identities = 178/200 (89%)
Strand = Plus / Plus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||
Sbjct: 31020 acctgaaggtttcgccaatgagagttcttccagcgcactggatccaagtcaccaatacct 31079
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 31080 gtgattgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaac 31139
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||
Sbjct: 31140 cgcattccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgaca 31199
Query: 502 aattctgatgggcntgccct 521
||||||||||| | ||||||
Sbjct: 31200 aattctgatggacttgccct 31219
Score = 210 bits (106), Expect = 7e-052
Identities = 148/162 (91%)
Strand = Plus / Plus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 30022 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 30081
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 30082 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 30141
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 30142 tggctcttttgaaagcactctcaacttcattttcatcatctg 30183
Score = 184 bits (93), Expect = 4e-044
Identities = 129/141 (91%)
Strand = Plus / Plus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 30636 ctggcattcctggctgcttaggaagttttggcctgaaaaatggtggtggacaaatataaa 30695
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 30696 aaggtgtcgcgactggttcaatctcccatattgaaacacgagtgcgcctctcagatgctg 30755
Query: 305 tcgattcatcccaaccaacct 325
| |||||||||||||||||||
Sbjct: 30756 ttgattcatcccaaccaacct 30776
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 31306 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 31353
>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0528E04
Length = 170701
Score = 224 bits (113), Expect = 4e-056
Identities = 178/200 (89%)
Strand = Plus / Minus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||
Sbjct: 126830 acctgaaggtttcgccaatgagagttcttccagcgcactggatccaagtcaccaatacct 126771
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 126770 gtgattgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaac 126711
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||
Sbjct: 126710 cgcattccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgaca 126651
Query: 502 aattctgatgggcntgccct 521
||||||||||| | ||||||
Sbjct: 126650 aattctgatggacttgccct 126631
Score = 210 bits (106), Expect = 7e-052
Identities = 148/162 (91%)
Strand = Plus / Minus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 127828 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 127769
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 127768 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 127709
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 127708 tggctcttttgaaagcactctcaacttcattttcatcatctg 127667
Score = 184 bits (93), Expect = 4e-044
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 127214 ctggcattcctggctgcttaggaagttttggcctgaaaaatggtggtggacaaatataaa 127155
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 127154 aaggtgtcgcgactggttcaatctcccatattgaaacacgagtgcgcctctcagatgctg 127095
Query: 305 tcgattcatcccaaccaacct 325
| |||||||||||||||||||
Sbjct: 127094 ttgattcatcccaaccaacct 127074
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 126544 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 126497
>gb|AACV01013222.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013222, whole
genome shotgun sequence
Length = 8941
Score = 224 bits (113), Expect = 4e-056
Identities = 178/200 (89%)
Strand = Plus / Minus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||
Sbjct: 3091 acctgaaggtttcgccaatgagagttcttccagcgcactggatccaagtcaccaatacct 3032
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 3031 gtgattgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaac 2972
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||
Sbjct: 2971 cgcattccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgaca 2912
Query: 502 aattctgatgggcntgccct 521
||||||||||| | ||||||
Sbjct: 2911 aattctgatggacttgccct 2892
Score = 210 bits (106), Expect = 7e-052
Identities = 148/162 (91%)
Strand = Plus / Minus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 4089 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 4030
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 4029 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 3970
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 3969 tggctcttttgaaagcactctcaacttcattttcatcatctg 3928
Score = 184 bits (93), Expect = 4e-044
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 3475 ctggcattcctggctgcttaggaagttttggcctgaaaaatggtggtggacaaatataaa 3416
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 3415 aaggtgtcgcgactggttcaatctcccatattgaaacacgagtgcgcctctcagatgctg 3356
Query: 305 tcgattcatcccaaccaacct 325
| |||||||||||||||||||
Sbjct: 3355 ttgattcatcccaaccaacct 3335
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 2805 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 2758
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 224 bits (113), Expect = 4e-056
Identities = 178/200 (89%)
Strand = Plus / Minus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||
Sbjct: 630927 acctgaaggtttcgccaatgagagttcttccagcgcactggatccaagtcaccaatacct 630868
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 630867 gtgattgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaac 630808
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||
Sbjct: 630807 cgcattccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgaca 630748
Query: 502 aattctgatgggcntgccct 521
||||||||||| | ||||||
Sbjct: 630747 aattctgatggacttgccct 630728
Score = 210 bits (106), Expect = 7e-052
Identities = 148/162 (91%)
Strand = Plus / Minus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 631925 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 631866
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 631865 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 631806
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 631805 tggctcttttgaaagcactctcaacttcattttcatcatctg 631764
Score = 184 bits (93), Expect = 4e-044
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 631311 ctggcattcctggctgcttaggaagttttggcctgaaaaatggtggtggacaaatataaa 631252
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 631251 aaggtgtcgcgactggttcaatctcccatattgaaacacgagtgcgcctctcagatgctg 631192
Query: 305 tcgattcatcccaaccaacct 325
| |||||||||||||||||||
Sbjct: 631191 ttgattcatcccaaccaacct 631171
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 630641 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 630594
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 224 bits (113), Expect = 4e-056
Identities = 178/200 (89%)
Strand = Plus / Minus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||
Sbjct: 4774742 acctgaaggtttcgccaatgagagttcttccagcgcactggatccaagtcaccaatacct 4774683
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 4774682 gtgattgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaac 4774623
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||
Sbjct: 4774622 cgcattccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgaca 4774563
Query: 502 aattctgatgggcntgccct 521
||||||||||| | ||||||
Sbjct: 4774562 aattctgatggacttgccct 4774543
Score = 210 bits (106), Expect = 7e-052
Identities = 148/162 (91%)
Strand = Plus / Minus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 4775740 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 4775681
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 4775680 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 4775621
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 4775620 tggctcttttgaaagcactctcaacttcattttcatcatctg 4775579
Score = 184 bits (93), Expect = 4e-044
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 4775126 ctggcattcctggctgcttaggaagttttggcctgaaaaatggtggtggacaaatataaa 4775067
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 4775066 aaggtgtcgcgactggttcaatctcccatattgaaacacgagtgcgcctctcagatgctg 4775007
Query: 305 tcgattcatcccaaccaacct 325
| |||||||||||||||||||
Sbjct: 4775006 ttgattcatcccaaccaacct 4774986
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 4774456 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 4774409
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 224 bits (113), Expect = 4e-056
Identities = 178/200 (89%)
Strand = Plus / Minus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||
Sbjct: 4774742 acctgaaggtttcgccaatgagagttcttccagcgcactggatccaagtcaccaatacct 4774683
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 4774682 gtgattgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaac 4774623
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||
Sbjct: 4774622 cgcattccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgaca 4774563
Query: 502 aattctgatgggcntgccct 521
||||||||||| | ||||||
Sbjct: 4774562 aattctgatggacttgccct 4774543
Score = 210 bits (106), Expect = 7e-052
Identities = 148/162 (91%)
Strand = Plus / Minus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 4775740 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 4775681
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 4775680 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 4775621
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 4775620 tggctcttttgaaagcactctcaacttcattttcatcatctg 4775579
Score = 184 bits (93), Expect = 4e-044
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 4775126 ctggcattcctggctgcttaggaagttttggcctgaaaaatggtggtggacaaatataaa 4775067
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 4775066 aaggtgtcgcgactggttcaatctcccatattgaaacacgagtgcgcctctcagatgctg 4775007
Query: 305 tcgattcatcccaaccaacct 325
| |||||||||||||||||||
Sbjct: 4775006 ttgattcatcccaaccaacct 4774986
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 4774456 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 4774409
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 28269313 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 28269254
Query: 280 ac 281
||
Sbjct: 28269253 ac 28269252
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 224 bits (113), Expect = 4e-056
Identities = 178/200 (89%)
Strand = Plus / Minus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
||||||||||||||||||||||| |||||||| |||| |||||| ||||| ||||| |||
Sbjct: 4939347 acctgaaggtttcgccaatgagagttcttccagcgcactggatccaagtcaccaatacct 4939288
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 4939287 gtgattgttcccatatatcttcgaacccctgaatcctctgtctcaaacagcattctgaac 4939228
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||| || ||||||||||||| |||||| || ||||| |||||||| ||||||
Sbjct: 4939227 cgcattccaagagatacttgtgtatacaaagccttgttatatttcgctaaaggaatgaca 4939168
Query: 502 aattctgatgggcntgccct 521
||||||||||| | ||||||
Sbjct: 4939167 aattctgatggacttgccct 4939148
Score = 210 bits (106), Expect = 7e-052
Identities = 148/162 (91%)
Strand = Plus / Minus
Query: 26 gggaagcagttgctagcatctgaggattttgctgcatagccatccattgaactaggctca 85
|||| |||| || ||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 4940345 gggacgcagctgttagcatctgaggattctgttgcatagccatccattggactaggctca 4940286
Query: 86 ggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaagccatggca 145
| ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 4940285 gacctggaaataatgcactttgcacatctttcagggcaaagtcatcagcaagccatggca 4940226
Query: 146 tcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 4940225 tggctcttttgaaagcactctcaacttcattttcatcatctg 4940184
Score = 184 bits (93), Expect = 4e-044
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 4939731 ctggcattcctggctgcttaggaagttttggcctgaaaaatggtggtggacaaatataaa 4939672
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
| ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 4939671 aaggtgtcgcgactggttcaatctcccatattgaaacacgagtgcgcctctcagatgctg 4939612
Query: 305 tcgattcatcccaaccaacct 325
| |||||||||||||||||||
Sbjct: 4939611 ttgattcatcccaaccaacct 4939591
Score = 73.8 bits (37), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaatggnctactatttgcagcagcatg 566
||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 4939061 ccttggattgtagaaaatagtaaatgggctactgtttgcagcagcatg 4939014
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 29145616 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 29145557
Query: 280 ac 281
||
Sbjct: 29145556 ac 29145555
>dbj|AK103280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124L19, full
insert sequence
Length = 3731
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 379 cctgtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctg 438
||||| ||||||||||||||||| | ||| | ||| || ||||||||||| ||||| |||
Sbjct: 1676 cctgttatcgtgcccatgtatctccgtacacttgactcttctgtctcaaaaagcatcctg 1617
Query: 439 aatcgcat 446
|| |||||
Sbjct: 1616 aaacgcat 1609
>gb|CB639520.1|CB639520 OSJNEa10P12.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa10P12 5', mRNA sequence
Length = 596
Score = 50.1 bits (25), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 511 gggcntgcccttggattatagaaaatagtaaa 542
|||| ||| |||||||||||||||||||||||
Sbjct: 353 gggcttgctcttggattatagaaaatagtaaa 322
>dbj|AK070569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056C15, full
insert sequence
Length = 3885
Score = 50.1 bits (25), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 511 gggcntgcccttggattatagaaaatagtaaa 542
|||| ||| |||||||||||||||||||||||
Sbjct: 1607 gggcttgctcttggattatagaaaatagtaaa 1576
>gb|AACV01010647.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010647, whole
genome shotgun sequence
Length = 28129
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 tgcagtcgattcatcccaaccaacctgaa 328
|||||| ||||||||||||||||||||||
Sbjct: 18781 tgcagttgattcatcccaaccaacctgaa 18809
>ref|XM_464221.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3236
Score = 50.1 bits (25), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 511 gggcntgcccttggattatagaaaatagtaaa 542
|||| ||| |||||||||||||||||||||||
Sbjct: 985 gggcttgctcttggattatagaaaatagtaaa 954
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 tgcagtcgattcatcccaaccaacctgaa 328
|||||| ||||||||||||||||||||||
Sbjct: 1711239 tgcagttgattcatcccaaccaacctgaa 1711267
>ref|XM_506725.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1661_C12.26 mRNA
Length = 3885
Score = 50.1 bits (25), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 511 gggcntgcccttggattatagaaaatagtaaa 542
|||| ||| |||||||||||||||||||||||
Sbjct: 1607 gggcttgctcttggattatagaaaatagtaaa 1576
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 tgcagtcgattcatcccaaccaacctgaa 328
|||||| ||||||||||||||||||||||
Sbjct: 11892946 tgcagttgattcatcccaaccaacctgaa 11892974
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 tgcagtcgattcatcccaaccaacctgaa 328
|||||| ||||||||||||||||||||||
Sbjct: 31037045 tgcagttgattcatcccaaccaacctgaa 31037073
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
complete sequence
Length = 159894
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 tgcagtcgattcatcccaaccaacctgaa 328
|||||| ||||||||||||||||||||||
Sbjct: 40516 tgcagttgattcatcccaaccaacctgaa 40544
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 tgcagtcgattcatcccaaccaacctgaa 328
|||||| ||||||||||||||||||||||
Sbjct: 34316113 tgcagttgattcatcccaaccaacctgaa 34316141
>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1661_C12
Length = 122214
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaa 542
||||||||||||||||||||||||
Sbjct: 102681 ccttggattatagaaaatagtaaa 102658
>dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0023I17
Length = 141852
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaa 542
||||||||||||||||||||||||
Sbjct: 34653 ccttggattatagaaaatagtaaa 34630
>gb|AACV01003410.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003410, whole
genome shotgun sequence
Length = 40342
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaa 542
||||||||||||||||||||||||
Sbjct: 13617 ccttggattatagaaaatagtaaa 13594
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaa 542
||||||||||||||||||||||||
Sbjct: 455706 ccttggattatagaaaatagtaaa 455683
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaa 542
||||||||||||||||||||||||
Sbjct: 3577646 ccttggattatagaaaatagtaaa 3577623
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaa 542
||||||||||||||||||||||||
Sbjct: 3577646 ccttggattatagaaaatagtaaa 3577623
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 519 ccttggattatagaaaatagtaaa 542
||||||||||||||||||||||||
Sbjct: 3489858 ccttggattatagaaaatagtaaa 3489835
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3420
Score = 46.1 bits (23), Expect = 0.023
Identities = 84/105 (80%)
Strand = Plus / Minus
Query: 464 tatacagagccttattgtattttgctaaagggatgacaaattctgatgggcntgcccttg 523
||||||| ||||| | ||||||||| || ||||| |||||||| | || | ||||| |
Sbjct: 919 tatacagtgccttctggtattttgcaaatgggataacaaattcagtaggactggccctag 860
Query: 524 gattatagaaaatagtaaatggnctactatttgcagcagcatggg 568
| ||||| || || ||||| || ||||| || |||||||||||||
Sbjct: 859 ggttataaaatatggtaaaagggctactgttggcagcagcatggg 815
>dbj|AG024751.1| Oryza sativa (japonica cultivar-group) DNA, clone:T01966T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0224, genomic survey sequence
Length = 362
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 158 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 217
Query: 280 ac 281
||
Sbjct: 218 ac 219
>gb|C98780.1|C98780 C98780 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3089_1A, mRNA sequence
Length = 461
Score = 44.1 bits (22), Expect = 0.089
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
|||||| |||||||||||||||||||
Sbjct: 85 tgcagttgattcatcccaaccaacct 60
>dbj|AK065025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G10, full
insert sequence
Length = 3843
Score = 44.1 bits (22), Expect = 0.089
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || |||||||||| || || | ||| ||||||||||| || |||||||| ||
Sbjct: 1798 gtgattgtacccatgtatcgcctgacacttgactcctctgtctcgaaaagcattctaaaa 1739
Query: 442 cgcattccaa 451
||||||||||
Sbjct: 1738 cgcattccaa 1729
>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full
insert sequence
Length = 3262
Score = 44.1 bits (22), Expect = 0.089
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
|||||| |||||||||||||||||||
Sbjct: 1391 tgcagttgattcatcccaaccaacct 1366
Score = 42.1 bits (21), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 496 atgacaaattctgatgggcntgcccttggattatagaaaatagt 539
||||||||||||||||| | ||||| || || |||||||||||
Sbjct: 1192 atgacaaattctgatggacttgcccgggggttgtagaaaatagt 1149
>dbj|AK103312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G19, full
insert sequence
Length = 3550
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 1504 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 1445
Query: 280 ac 281
||
Sbjct: 1444 ac 1443
Score = 42.1 bits (21), Expect = 0.35
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 307 gattcatcccaaccaacctgaaggtttcgccaatgagaattcttccatc 355
|||||||||||||||||||| | ||| ||||| || || || |||||||
Sbjct: 1417 gattcatcccaaccaacctgtaagttgcgccactgcgagtttttccatc 1369
>dbj|AK121703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074F07, full
insert sequence
Length = 3878
Score = 44.1 bits (22), Expect = 0.089
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||| || |||||||||| || || | ||| ||||||||||| || |||||||| ||
Sbjct: 1786 gtgattgtacccatgtatcgcctgacacttgactcctctgtctcgaaaagcattctaaaa 1727
Query: 442 cgcattccaa 451
||||||||||
Sbjct: 1726 cgcattccaa 1717
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 295660 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 295601
Query: 280 ac 281
||
Sbjct: 295600 ac 295599
>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1215_E11
Length = 105301
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 12903 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 12844
Query: 280 ac 281
||
Sbjct: 12843 ac 12842
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0596H10
Length = 166570
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 160603 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 160544
Query: 280 ac 281
||
Sbjct: 160543 ac 160542
>gb|AACV01014877.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014877, whole
genome shotgun sequence
Length = 37173
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 23760 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 23701
Query: 280 ac 281
||
Sbjct: 23700 ac 23699
>ref|XM_474307.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2457
Score = 44.1 bits (22), Expect = 0.089
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
|||||| |||||||||||||||||||
Sbjct: 1056 tgcagttgattcatcccaaccaacct 1031
Score = 42.1 bits (21), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 496 atgacaaattctgatgggcntgcccttggattatagaaaatagt 539
||||||||||||||||| | ||||| || || |||||||||||
Sbjct: 857 atgacaaattctgatggacttgcccgggggttgtagaaaatagt 814
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 44.1 bits (22), Expect = 0.089
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 220 aaaaatggtggtgggcatatataaaatggtgtagcaactggttcaatctcccatatcgaa 279
||||||||||| || ||||| ||||||| | ||| || |||||||||||||| || |||
Sbjct: 10570576 aaaaatggtggaggacatatgaaaaatggagcagcgaccggttcaatctcccagatagaa 10570517
Query: 280 ac 281
||
Sbjct: 10570516 ac 10570515
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 42.1 bits (21), Expect = 0.35
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
||||||||||| || |||||||| || ||||||||||
Sbjct: 72912 tcctctgtctcgaaaagcattctaaaacgcattccaa 72876
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 42.1 bits (21), Expect = 0.35
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
||||||||||| || |||||||| || ||||||||||
Sbjct: 2210357 tcctctgtctcgaaaagcattctaaaacgcattccaa 2210393
>gb|AACV01025520.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025520, whole
genome shotgun sequence
Length = 10645
Score = 42.1 bits (21), Expect = 0.35
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
||||||||||| || |||||||| || ||||||||||
Sbjct: 5638 tcctctgtctcgaaaagcattctaaaacgcattccaa 5602
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 42.1 bits (21), Expect = 0.35
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
||||||||||| || |||||||| || ||||||||||
Sbjct: 3059666 tcctctgtctcgaaaagcattctaaaacgcattccaa 3059702
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 42.1 bits (21), Expect = 0.35
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
||||||||||| || |||||||| || ||||||||||
Sbjct: 22243312 tcctctgtctcgaaaagcattctaaaacgcattccaa 22243348
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 42.1 bits (21), Expect = 0.35
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
||||||||||| || |||||||| || ||||||||||
Sbjct: 26038759 tcctctgtctcgaaaagcattctaaaacgcattccaa 26038795
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 42.1 bits (21), Expect = 0.35
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 415 tcctctgtctcaaagagcattctgaatcgcattccaa 451
||||||||||| || |||||||| || ||||||||||
Sbjct: 25966935 tcctctgtctcgaaaagcattctaaaacgcattccaa 25966971
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 811,760
Number of Sequences: 438736
Number of extensions: 811760
Number of successful extensions: 3665
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3444
Number of HSP's gapped (non-prelim): 223
length of query: 626
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 605
effective length of database: 2,791,206,460
effective search space: 1688679908300
effective search space used: 1688679908300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)