BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21b10.yg.2.1
(574 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU063933.1|AU063933 AU063933 Rice panicle at flowering s... 260 7e-067
gb|AU063877.1|AU063877 AU063877 Rice panicle at flowering s... 242 2e-061
dbj|AP004591.3| Oryza sativa (japonica cultivar-group) geno... 145 3e-032
gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) c... 145 3e-032
dbj|AP005250.3| Oryza sativa (japonica cultivar-group) geno... 145 3e-032
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 145 3e-032
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 145 3e-032
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 145 3e-032
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 145 3e-032
gb|CB681746.1|CB681746 OSJNEf08G03.f OSJNEf Oryza sativa (j... 70 1e-009
dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 70 1e-009
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CV730758.1|CV730758 FLO--04-H15.b1 Rice flower lambda ph... 64 9e-008
dbj|AK064329.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AK100100.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AK101244.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 ... 64 9e-008
dbj|AP003743.4| Oryza sativa (japonica cultivar-group) geno... 64 9e-008
gb|AACV01007692.1| Oryza sativa (japonica cultivar-group) c... 64 9e-008
gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) c... 64 9e-008
ref|XM_476977.1| Oryza sativa (japonica cultivar-group), mRNA 64 9e-008
ref|XM_506213.1| PREDICTED Oryza sativa (japonica cultivar-... 64 9e-008
ref|XM_506214.1| PREDICTED Oryza sativa (japonica cultivar-... 64 9e-008
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 64 9e-008
dbj|AP003848.3| Oryza sativa (japonica cultivar-group) geno... 64 9e-008
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 64 9e-008
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 64 9e-008
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 64 9e-008
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|CB684762.1|CB684762 OSJNEf14J15.f OSJNEf Oryza sativa (j... 56 2e-005
gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 ... 48 0.005
gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
>gb|AU063933.1|AU063933 AU063933 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2183_1A, mRNA sequence
Length = 433
Score = 260 bits (131), Expect = 7e-067
Identities = 245/283 (86%)
Strand = Plus / Plus
Query: 62 ggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgtcattttgccatt 121
||||||||||||| | |||| |||||| |||||||||||||||||||| |||||||||||
Sbjct: 1 ggtcaatgtaatgcttaagagagaagctgaatactttggagacattgtaattttgccatt 60
Query: 122 tatagaccgctatgagctggttgttcttaagacaattgctatctgtgagtatggggtcca 181
|||||| || |||||| |||| ||||| |||||||| ||||| || ||||| ||||||||
Sbjct: 61 tatagatcgttatgagttggtggttctcaagacaatcgctatttgcgagtacggggtcca 120
Query: 182 gaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagtagatgt 241
|| ||| |||||| | | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 aaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggtagatgt 180
Query: 242 agttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaaccttaa 301
||| | |||| |||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct: 181 ggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaacctcaa 240
Query: 302 cctcctgcacagaccattgaggactggaaaatgggcagttaca 344
|||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 241 cctcttgcataggcccttgagaatgggtaaatggacagttaca 283
>gb|AU063877.1|AU063877 AU063877 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1451_1A, mRNA sequence
Length = 399
Score = 242 bits (122), Expect = 2e-061
Identities = 243/282 (86%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 62 ggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgtcattttgccatt 121
||||||||||||| | |||| |||||| |||||||||||||||||||| |||||||||||
Sbjct: 1 ggtcaatgtaatgcttaagagagaagctgaatactttggagacattgtaattttgccatt 60
Query: 122 tatagaccgctatgagctggttgttcttaagacaattgctatctgtgagtatggggtcca 181
|||||| || |||||| |||| ||||| |||||||| ||||| || ||||| ||||||||
Sbjct: 61 tatagatcgttatgagttggtggttctcaagacaatcgctatttgcgagtacggggtcca 120
Query: 182 gaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagtagatgt 241
|| ||| |||||| | | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 aaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggtagatgt 180
Query: 242 agttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaaccttaa 301
||| | |||| |||||||||||||||||||| || ||||||||||||||| |||| ||
Sbjct: 181 ggttgtcagacacatcaagttgaacaatggtggcaggccattatatatgggg-acctcaa 239
Query: 302 cctcctgcacagaccattgaggactggaaaatgggcagttac 343
|||| |||| || || ||||| | || |||||| |||||||
Sbjct: 240 cctcttgcataggcccttgagaatgggtaaatggacagttac 281
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0582D05
Length = 150483
Score = 145 bits (73), Expect = 3e-032
Identities = 145/169 (85%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||| || ||| |||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 141021 ggtccaaaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggt 141080
Query: 236 agatgtagttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaa 295
|||||| ||| | |||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 141081 agatgtggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaa 141140
Query: 296 ccttaacctcctgcacagaccattgaggactggaaaatgggcagttaca 344
||| |||||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 141141 cctcaacctcttgcataggcccttgagaatgggtaaatggacagttaca 141189
Score = 135 bits (68), Expect = 3e-029
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 140411 gaattcaaggaaagaggtcaatgtaatgcttaagagagaagctgaatactttggagacat 140470
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||| ||||||||||||||||| || |||||| |||| ||||| |||||||| ||||| ||
Sbjct: 140471 tgtaattttgccatttatagatcgttatgagttggtggttctcaagacaatcgctatttg 140530
Query: 167 tgagtatggggt 178
||||| |||||
Sbjct: 140531 cgagtacggggt 140542
Score = 101 bits (51), Expect = 4e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||
Sbjct: 141381 aggagtggcctgaagacatctatccaccttatgcaaatggacccggttatgtgatttctg 141440
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||| |||||| ||||||| |||| |||||| |||||
Sbjct: 141441 gtgacatagcgaaattcgtcgtgtctcagcatgccaaccagag 141483
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 141580 agatggaggacgtaagcatggggctgtgggttgagaagttcaa 141622
>gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017194, whole
genome shotgun sequence
Length = 26448
Score = 145 bits (73), Expect = 3e-032
Identities = 145/169 (85%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||| || ||| |||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 6228 ggtccaaaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggt 6287
Query: 236 agatgtagttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaa 295
|||||| ||| | |||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 6288 agatgtggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaa 6347
Query: 296 ccttaacctcctgcacagaccattgaggactggaaaatgggcagttaca 344
||| |||||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 6348 cctcaacctcttgcataggcccttgagaatgggtaaatggacagttaca 6396
Score = 135 bits (68), Expect = 3e-029
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 5618 gaattcaaggaaagaggtcaatgtaatgcttaagagagaagctgaatactttggagacat 5677
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||| ||||||||||||||||| || |||||| |||| ||||| |||||||| ||||| ||
Sbjct: 5678 tgtaattttgccatttatagatcgttatgagttggtggttctcaagacaatcgctatttg 5737
Query: 167 tgagtatggggt 178
||||| |||||
Sbjct: 5738 cgagtacggggt 5749
Score = 101 bits (51), Expect = 4e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||
Sbjct: 6588 aggagtggcctgaagacatctatccaccttatgcaaatggacccggttatgtgatttctg 6647
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||| |||||| ||||||| |||| |||||| |||||
Sbjct: 6648 gtgacatagcgaaattcgtcgtgtctcagcatgccaaccagag 6690
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 6787 agatggaggacgtaagcatggggctgtgggttgagaagttcaa 6829
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0009H02
Length = 155388
Score = 145 bits (73), Expect = 3e-032
Identities = 145/169 (85%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||| || ||| |||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 23882 ggtccaaaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggt 23941
Query: 236 agatgtagttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaa 295
|||||| ||| | |||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 23942 agatgtggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaa 24001
Query: 296 ccttaacctcctgcacagaccattgaggactggaaaatgggcagttaca 344
||| |||||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 24002 cctcaacctcttgcataggcccttgagaatgggtaaatggacagttaca 24050
Score = 135 bits (68), Expect = 3e-029
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 23272 gaattcaaggaaagaggtcaatgtaatgcttaagagagaagctgaatactttggagacat 23331
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||| ||||||||||||||||| || |||||| |||| ||||| |||||||| ||||| ||
Sbjct: 23332 tgtaattttgccatttatagatcgttatgagttggtggttctcaagacaatcgctatttg 23391
Query: 167 tgagtatggggt 178
||||| |||||
Sbjct: 23392 cgagtacggggt 23403
Score = 101 bits (51), Expect = 4e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||
Sbjct: 24242 aggagtggcctgaagacatctatccaccttatgcaaatggacccggttatgtgatttctg 24301
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||| |||||| ||||||| |||| |||||| |||||
Sbjct: 24302 gtgacatagcgaaattcgtcgtgtctcagcatgccaaccagag 24344
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 24441 agatggaggacgtaagcatggggctgtgggttgagaagttcaa 24483
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 145 bits (73), Expect = 3e-032
Identities = 145/169 (85%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||| || ||| |||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 1509047 ggtccaaaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggt 1509106
Query: 236 agatgtagttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaa 295
|||||| ||| | |||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1509107 agatgtggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaa 1509166
Query: 296 ccttaacctcctgcacagaccattgaggactggaaaatgggcagttaca 344
||| |||||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 1509167 cctcaacctcttgcataggcccttgagaatgggtaaatggacagttaca 1509215
Score = 135 bits (68), Expect = 3e-029
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 1508437 gaattcaaggaaagaggtcaatgtaatgcttaagagagaagctgaatactttggagacat 1508496
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||| ||||||||||||||||| || |||||| |||| ||||| |||||||| ||||| ||
Sbjct: 1508497 tgtaattttgccatttatagatcgttatgagttggtggttctcaagacaatcgctatttg 1508556
Query: 167 tgagtatggggt 178
||||| |||||
Sbjct: 1508557 cgagtacggggt 1508568
Score = 101 bits (51), Expect = 4e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||
Sbjct: 1509407 aggagtggcctgaagacatctatccaccttatgcaaatggacccggttatgtgatttctg 1509466
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||| |||||| ||||||| |||| |||||| |||||
Sbjct: 1509467 gtgacatagcgaaattcgtcgtgtctcagcatgccaaccagag 1509509
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 1509606 agatggaggacgtaagcatggggctgtgggttgagaagttcaa 1509648
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 145 bits (73), Expect = 3e-032
Identities = 145/169 (85%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||| || ||| |||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 1715223 ggtccaaaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggt 1715282
Query: 236 agatgtagttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaa 295
|||||| ||| | |||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1715283 agatgtggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaa 1715342
Query: 296 ccttaacctcctgcacagaccattgaggactggaaaatgggcagttaca 344
||| |||||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 1715343 cctcaacctcttgcataggcccttgagaatgggtaaatggacagttaca 1715391
Score = 135 bits (68), Expect = 3e-029
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 1714613 gaattcaaggaaagaggtcaatgtaatgcttaagagagaagctgaatactttggagacat 1714672
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||| ||||||||||||||||| || |||||| |||| ||||| |||||||| ||||| ||
Sbjct: 1714673 tgtaattttgccatttatagatcgttatgagttggtggttctcaagacaatcgctatttg 1714732
Query: 167 tgagtatggggt 178
||||| |||||
Sbjct: 1714733 cgagtacggggt 1714744
Score = 101 bits (51), Expect = 4e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||
Sbjct: 1715583 aggagtggcctgaagacatctatccaccttatgcaaatggacccggttatgtgatttctg 1715642
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||| |||||| ||||||| |||| |||||| |||||
Sbjct: 1715643 gtgacatagcgaaattcgtcgtgtctcagcatgccaaccagag 1715685
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 1715782 agatggaggacgtaagcatggggctgtgggttgagaagttcaa 1715824
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 145 bits (73), Expect = 3e-032
Identities = 145/169 (85%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||| || ||| |||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 1715223 ggtccaaaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggt 1715282
Query: 236 agatgtagttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaa 295
|||||| ||| | |||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1715283 agatgtggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaa 1715342
Query: 296 ccttaacctcctgcacagaccattgaggactggaaaatgggcagttaca 344
||| |||||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 1715343 cctcaacctcttgcataggcccttgagaatgggtaaatggacagttaca 1715391
Score = 135 bits (68), Expect = 3e-029
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 1714613 gaattcaaggaaagaggtcaatgtaatgcttaagagagaagctgaatactttggagacat 1714672
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||| ||||||||||||||||| || |||||| |||| ||||| |||||||| ||||| ||
Sbjct: 1714673 tgtaattttgccatttatagatcgttatgagttggtggttctcaagacaatcgctatttg 1714732
Query: 167 tgagtatggggt 178
||||| |||||
Sbjct: 1714733 cgagtacggggt 1714744
Score = 101 bits (51), Expect = 4e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||
Sbjct: 1715583 aggagtggcctgaagacatctatccaccttatgcaaatggacccggttatgtgatttctg 1715642
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||| |||||| ||||||| |||| |||||| |||||
Sbjct: 1715643 gtgacatagcgaaattcgtcgtgtctcagcatgccaaccagag 1715685
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 1715782 agatggaggacgtaagcatggggctgtgggttgagaagttcaa 1715824
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 145 bits (73), Expect = 3e-032
Identities = 145/169 (85%)
Strand = Plus / Plus
Query: 176 ggtccagaacttgactgctgcaaacatcatgaaatgtgacgatgatacatttgtgagagt 235
|||||| || ||| |||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 1741521 ggtccaaaatttggctgctgtacatatcatgaaatgtgacgatgatacatttgtgagggt 1741580
Query: 236 agatgtagttctgagacgcatcaagttgaacaatggtgacaaaccattatatatggggaa 295
|||||| ||| | |||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1741581 agatgtggttgtcagacacatcaagttgaacaatggtggcaggccattatatatggggaa 1741640
Query: 296 ccttaacctcctgcacagaccattgaggactggaaaatgggcagttaca 344
||| |||||| |||| || || ||||| | || |||||| ||||||||
Sbjct: 1741641 cctcaacctcttgcataggcccttgagaatgggtaaatggacagttaca 1741689
Score = 135 bits (68), Expect = 3e-029
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 47 gaattcgaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacat 106
|||||| ||||| ||||||||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 1740911 gaattcaaggaaagaggtcaatgtaatgcttaagagagaagctgaatactttggagacat 1740970
Query: 107 tgtcattttgccatttatagaccgctatgagctggttgttcttaagacaattgctatctg 166
||| ||||||||||||||||| || |||||| |||| ||||| |||||||| ||||| ||
Sbjct: 1740971 tgtaattttgccatttatagatcgttatgagttggtggttctcaagacaatcgctatttg 1741030
Query: 167 tgagtatggggt 178
||||| |||||
Sbjct: 1741031 cgagtacggggt 1741042
Score = 101 bits (51), Expect = 4e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 349 aggagtggcctgaggatatctacccgccatatgcaaacggaccaggctatgtgatttctg 408
||||||||||||| || ||||| || || |||||||| ||||| || |||||||||||||
Sbjct: 1741881 aggagtggcctgaagacatctatccaccttatgcaaatggacccggttatgtgatttctg 1741940
Query: 409 gtgacatagcaaaattcatcgtgtcacagcgtgccaatcagag 451
|||||||||| |||||| ||||||| |||| |||||| |||||
Sbjct: 1741941 gtgacatagcgaaattcgtcgtgtctcagcatgccaaccagag 1741983
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 1742080 agatggaggacgtaagcatggggctgtgggttgagaagttcaa 1742122
>gb|CB681746.1|CB681746 OSJNEf08G03.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08G03 5', mRNA sequence
Length = 824
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 511 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 570
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 571 ctggtggttct 581
>dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A12, full
insert sequence
Length = 2495
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 1480 aagacagaagcagattattttggagattttgtcattctgccatttattgaccgatatgag 1539
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 1540 ctggtggttct 1550
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 1868 agatggaagatgtgagcatgggcatgtgggtcga 1901
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 58781 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 58722
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 58721 ctggtggttct 58711
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 58134 agatggaagatgtgagcatgggcatgtgggtcga 58101
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 2224488 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 2224547
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 2224548 ctggtggttct 2224558
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 2225135 agatggaagatgtgagcatgggcatgtgggtcga 2225168
>gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025522, whole
genome shotgun sequence
Length = 26935
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 21085 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 21026
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 21025 ctggtggttct 21015
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 20438 agatggaagatgtgagcatgggcatgtgggtcga 20405
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 3073677 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 3073736
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 3073737 ctggtggttct 3073747
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 3074324 agatggaagatgtgagcatgggcatgtgggtcga 3074357
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 22257323 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 22257382
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 22257383 ctggtggttct 22257393
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 22257970 agatggaagatgtgagcatgggcatgtgggtcga 22258003
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 26052890 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 26052949
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 26052950 ctggtggttct 26052960
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 26053537 agatggaagatgtgagcatgggcatgtgggtcga 26053570
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 78 aagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctatgag 137
|||| ||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||
Sbjct: 25981066 aagacagaagcagattattttggagatgttgtcattctgccatttattgaccgatatgag 25981125
Query: 138 ctggttgttct 148
||||| |||||
Sbjct: 25981126 ctggtggttct 25981136
Score = 44.1 bits (22), Expect = 0.082
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcga 499
||||||||||||| ||||||||| | ||||||||
Sbjct: 25981713 agatggaagatgtgagcatgggcatgtgggtcga 25981746
>gb|CV730758.1|CV730758 FLO--04-H15.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-H15,
mRNA sequence
Length = 497
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 235 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 281
>dbj|AK064329.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F09, full
insert sequence
Length = 1932
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 1289 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 1335
Score = 46.1 bits (23), Expect = 0.021
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
||||||||| |||||| ||||||||||||||
Sbjct: 1026 acatcatgagatgtgatgatgatacatttgt 1056
>dbj|AK100100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004E20, full
insert sequence
Length = 2443
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 1823 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 1869
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 1560 acatcatgaaatgtgatgatgatacatttgt 1590
>dbj|AK101244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032A07, full
insert sequence
Length = 2439
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 1819 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 1865
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 1556 acatcatgaaatgtgatgatgatacatttgt 1586
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete
sequence
Length = 138345
Score = 63.9 bits (32), Expect = 9e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||||||| | | ||||||||||||||||||| |||| ||| ||| | |||
Sbjct: 125948 ttgaagaaagaagcaaatttctttggagacattgtcattgtgccttttgcagatagttat 125889
Query: 135 gagctggttgttcttaagac 154
|| ||||||||||| |||||
Sbjct: 125888 gatctggttgttctgaagac 125869
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1118_E12
Length = 119691
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 117591 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 117545
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 118535 acatcatgaaatgtgatgatgatacatttgt 118505
>gb|AACV01007692.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007692, whole
genome shotgun sequence
Length = 30512
Score = 63.9 bits (32), Expect = 9e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||||||| | | ||||||||||||||||||| |||| ||| ||| | |||
Sbjct: 23961 ttgaagaaagaagcaaatttctttggagacattgtcattgtgccttttgcagatagttat 24020
Query: 135 gagctggttgttcttaagac 154
|| ||||||||||| |||||
Sbjct: 24021 gatctggttgttctgaagac 24040
>gb|AACV01015343.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015343, whole
genome shotgun sequence
Length = 76647
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 39203 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 39249
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 38259 acatcatgaaatgtgatgatgatacatttgt 38289
>ref|XM_476977.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2439
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 1819 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 1865
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 1556 acatcatgaaatgtgatgatgatacatttgt 1586
>ref|XM_506213.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1715_A07.12 mRNA
Length = 2443
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 1823 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 1869
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 1560 acatcatgaaatgtgatgatgatacatttgt 1590
>ref|XM_506214.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1715_A07.12 mRNA
Length = 1935
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 1292 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 1338
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 1029 acatcatgaaatgtgatgatgatacatttgt 1059
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 63.9 bits (32), Expect = 9e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||||||| | | ||||||||||||||||||| |||| ||| ||| | |||
Sbjct: 727461 ttgaagaaagaagcaaatttctttggagacattgtcattgtgccttttgcagatagttat 727402
Query: 135 gagctggttgttcttaagac 154
|| ||||||||||| |||||
Sbjct: 727401 gatctggttgttctgaagac 727382
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1715_A07
Length = 130907
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 28138 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 28092
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 29082 acatcatgaaatgtgatgatgatacatttgt 29052
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 5117496 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 5117450
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 5118440 acatcatgaaatgtgatgatgatacatttgt 5118410
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 2229661 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 2229615
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 2230605 acatcatgaaatgtgatgatgatacatttgt 2230575
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 63.9 bits (32), Expect = 9e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||||||| | | ||||||||||||||||||| |||| ||| ||| | |||
Sbjct: 1175501 ttgaagaaagaagcaaatttctttggagacattgtcattgtgccttttgcagatagttat 1175442
Query: 135 gagctggttgttcttaagac 154
|| ||||||||||| |||||
Sbjct: 1175441 gatctggttgttctgaagac 1175422
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||| ||||| | ||||| |||||||| ||| ||||||| || ||| |||||
Sbjct: 6967805 ttgaagaaagaggcagagttttttggggacattgttattgtgccattcatggacagctat 6967746
Query: 135 gagctggttgttcttaagac 154
|| | |||||||| |||||
Sbjct: 6967745 gacttagttgttctaaagac 6967726
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 5046410 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 5046364
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 5047354 acatcatgaaatgtgatgatgatacatttgt 5047324
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 63.9 bits (32), Expect = 9e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||||||| | | ||||||||||||||||||| |||| ||| ||| | |||
Sbjct: 28441664 ttgaagaaagaagcaaatttctttggagacattgtcattgtgccttttgcagatagttat 28441605
Query: 135 gagctggttgttcttaagac 154
|| ||||||||||| |||||
Sbjct: 28441604 gatctggttgttctgaagac 28441585
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||| ||||| | ||||| |||||||| ||| ||||||| || ||| |||||
Sbjct: 34233968 ttgaagaaagaggcagagttttttggggacattgttattgtgccattcatggacagctat 34233909
Query: 135 gagctggttgttcttaagac 154
|| | |||||||| |||||
Sbjct: 34233908 gacttagttgttctaaagac 34233889
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 63.9 bits (32), Expect = 9e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||||||| | | ||||||||||||||||||| |||| ||| ||| | |||
Sbjct: 27517064 ttgaagaaagaagcaaatttctttggagacattgtcattgtgccttttgcagatagttat 27517005
Query: 135 gagctggttgttcttaagac 154
|| ||||||||||| |||||
Sbjct: 27517004 gatctggttgttctgaagac 27516985
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||| ||||| | ||||| |||||||| ||| ||||||| || ||| |||||
Sbjct: 33335738 ttgaagaaagaggcagagttttttggggacattgttattgtgccattcatggacagctat 33335679
Query: 135 gagctggttgttcttaagac 154
|| | |||||||| |||||
Sbjct: 33335678 gacttagttgttctaaagac 33335659
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 63.9 bits (32), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 462 tttnagatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 5161424 tttaagatggaagatgtaaacatgggcatgtgggtcgagaagttcaa 5161378
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||||||||||||||| ||||||||||||||
Sbjct: 5162368 acatcatgaaatgtgatgatgatacatttgt 5162338
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 63.9 bits (32), Expect = 9e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||||||| | | ||||||||||||||||||| |||| ||| ||| | |||
Sbjct: 27425741 ttgaagaaagaagcaaatttctttggagacattgtcattgtgccttttgcagatagttat 27425682
Query: 135 gagctggttgttcttaagac 154
|| ||||||||||| |||||
Sbjct: 27425681 gatctggttgttctgaagac 27425662
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||| ||||| | ||||| |||||||| ||| ||||||| || ||| |||||
Sbjct: 33245228 ttgaagaaagaggcagagttttttggggacattgttattgtgccattcatggacagctat 33245169
Query: 135 gagctggttgttcttaagac 154
|| | |||||||| |||||
Sbjct: 33245168 gacttagttgttctaaagac 33245149
>gb|CB684762.1|CB684762 OSJNEf14J15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14J15 5', mRNA sequence
Length = 749
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgcc 118
||||||||||||||| | | ||||||||||||||||||| ||||
Sbjct: 680 ttgaagaaagaagcaaatttctttggagacattgtcattgtgcc 723
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence,
complete sequence
Length = 122815
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||| ||||| | ||||| |||||||| ||| ||||||| || ||| |||||
Sbjct: 1744 ttgaagaaagaggcagagttttttggggacattgttattgtgccattcatggacagctat 1685
Query: 135 gagctggttgttcttaagac 154
|| | |||||||| |||||
Sbjct: 1684 gacttagttgttctaaagac 1665
>gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008116, whole
genome shotgun sequence
Length = 6612
Score = 48.1 bits (24), Expect = 0.005
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 75 ttgaagaaagaagcagaatactttggagacattgtcattttgccatttatagaccgctat 134
||||||||||| ||||| | ||||| |||||||| ||| ||||||| || ||| |||||
Sbjct: 3555 ttgaagaaagaggcagagttttttggggacattgttattgtgccattcatggacagctat 3496
Query: 135 gagctggttgttcttaagac 154
|| | |||||||| |||||
Sbjct: 3495 gacttagttgttctaaagac 3476
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 642,974
Number of Sequences: 438736
Number of extensions: 642974
Number of successful extensions: 14129
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13484
Number of HSP's gapped (non-prelim): 645
length of query: 574
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 553
effective length of database: 2,791,206,460
effective search space: 1543537172380
effective search space used: 1543537172380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)