BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AG207962.1| Oryza sativa (japonica cultivar-group) DNA,... 163 8e-038
gb|AACV01002230.1| Oryza sativa (japonica cultivar-group) c... 163 8e-038
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 163 8e-038
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 163 8e-038
dbj|AP003408.3| Oryza sativa (japonica cultivar-group) geno... 163 8e-038
dbj|AP003288.3| Oryza sativa (japonica cultivar-group) geno... 163 8e-038
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 163 8e-038
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 163 8e-038
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 163 8e-038
dbj|AB157373.1| Oryza sativa (japonica cultivar-group) DNA,... 101 2e-019
gb|AC098571.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.20
gb|AACV01012757.1| Oryza sativa (japonica cultivar-group) c... 42 0.20
ref|XM_475933.1| Oryza sativa (japonica cultivar-group), p... 42 0.20
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 42 0.20
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.20
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.20
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.20
>dbj|AG207962.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE1003_0_405_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE1003, genomic survey sequence
Length = 505
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Plus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 37 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 96
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 97 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 156
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 157 ggcgaagttttctattcctctgctctcttt 186
>gb|AACV01002230.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002230, whole
genome shotgun sequence
Length = 39960
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Plus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 22373 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 22432
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 22433 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 22492
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 22493 ggcgaagttttctattcctctgctctcttt 22522
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 29852383 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 29852324
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 29852323 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 29852264
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 29852263 ggcgaagttttctattcctctgctctcttt 29852234
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 4299766 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 4299707
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 4299706 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 4299647
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 4299646 ggcgaagttttctattcctctgctctcttt 4299617
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1131B07
Length = 109135
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 101444 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 101385
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 101384 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 101325
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 101324 ggcgaagttttctattcctctgctctcttt 101295
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0683B11
Length = 155955
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 15808 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 15749
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 15748 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 15689
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 15688 ggcgaagttttctattcctctgctctcttt 15659
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 4229697 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 4229638
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 4229637 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 4229578
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 4229577 ggcgaagttttctattcctctgctctcttt 4229548
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 29431418 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 29431359
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 29431358 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 29431299
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 29431298 ggcgaagttttctattcctctgctctcttt 29431269
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 163 bits (82), Expect = 8e-038
Identities = 133/150 (88%)
Strand = Plus / Minus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 29771713 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 29771654
Query: 150 atccatacaatggtggaagctgttcacgccagagcagtgctccggtatcaacaagttcgt 209
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct: 29771653 atccataaaatggtggaagctgttcaccccagagcagtgctctgggatcaacaagtttgt 29771594
Query: 210 agcgaagttttccatccctttgctctcttt 239
||||||||||| || ||| ||||||||||
Sbjct: 29771593 ggcgaagttttctattcctctgctctcttt 29771564
>dbj|AB157373.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28260T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1029, genomic survey sequence
Length = 486
Score = 101 bits (51), Expect = 2e-019
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 90 catctaccatgttcttgaagaaacggttcccctgtatgtagctatgatagtggcctacct 149
|||||||| |||||||||| || ||||| || ||||||||||||||| ||||||||||
Sbjct: 397 catctacctcgttcttgaagcgacagttccactatatgtagctatgatactggcctacct 456
Query: 150 atccatacaatggtggaagctgttcac 176
||||||| |||||||||||||||||||
Sbjct: 457 atccataaaatggtggaagctgttcac 483
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
complete sequence
Length = 127304
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 173 tcacgccagagcagtgctccggtatcaac 201
||||||| |||||||||||||| ||||||
Sbjct: 45083 tcacgccggagcagtgctccggcatcaac 45055
>gb|AACV01012757.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012757, whole
genome shotgun sequence
Length = 8213
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 173 tcacgccagagcagtgctccggtatcaac 201
||||||| |||||||||||||| ||||||
Sbjct: 7117 tcacgccggagcagtgctccggcatcaac 7089
>ref|XM_475933.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1719
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 tcacgccagagcagtgctccggtatcaac 201
||||||| |||||||||||||| ||||||
Sbjct: 101 tcacgccggagcagtgctccggcatcaac 129
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 173 tcacgccagagcagtgctccggtatcaac 201
||||||| |||||||||||||| ||||||
Sbjct: 152314 tcacgccggagcagtgctccggcatcaac 152286
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 173 tcacgccagagcagtgctccggtatcaac 201
||||||| |||||||||||||| ||||||
Sbjct: 10941593 tcacgccggagcagtgctccggcatcaac 10941565
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 173 tcacgccagagcagtgctccggtatcaac 201
||||||| |||||||||||||| ||||||
Sbjct: 28241906 tcacgccggagcagtgctccggcatcaac 28241878
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 173 tcacgccagagcagtgctccggtatcaac 201
||||||| |||||||||||||| ||||||
Sbjct: 28517390 tcacgccggagcagtgctccggcatcaac 28517362
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 282,419
Number of Sequences: 438736
Number of extensions: 282419
Number of successful extensions: 4566
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4500
Number of HSP's gapped (non-prelim): 66
length of query: 361
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 341
effective length of database: 2,791,645,196
effective search space: 951951011836
effective search space used: 951951011836
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)