BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM14d12.yg.2.1
(593 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chro... 78 6e-012
dbj|AP005824.4| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) c... 78 6e-012
ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA 78 6e-012
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 78 6e-012
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
gb|D41261.1|D41261 RICS3630A Rice shoot Oryza sativa (japon... 74 9e-011
gb|AQ049866.1|AQ049866 nbxb0002cG08f CUGI Rice BAC Library ... 72 4e-010
gb|D47622.1|D47622 RICS13225A Rice green shoot Oryza sativa... 72 4e-010
gb|CB637086.1|CB637086 OSJNEa03E07.f OSJNEa Oryza sativa (j... 72 4e-010
gb|CB639904.1|CB639904 OSJNEa12H04.f OSJNEa Oryza sativa (j... 72 4e-010
gb|CB640086.1|CB640086 OSJNEa13D08.f OSJNEa Oryza sativa (j... 72 4e-010
gb|CB671068.1|CB671068 OSJNEe04H10.f OSJNEe Oryza sativa (j... 72 4e-010
gb|CB676377.1|CB676377 OSJNEe12J14.f OSJNEe Oryza sativa (j... 72 4e-010
gb|CB677472.1|CB677472 OSJNEe14G24.f OSJNEe Oryza sativa (j... 72 4e-010
gb|CF307212.1|CF307212 HDA1--06-B04.g1 OsHDAC1-overexpressi... 72 4e-010
dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK120236.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AP004298.4| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 72 4e-010
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AK058615.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 56 2e-005
gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 ... 56 2e-005
gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-005
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AQ913892.1|AQ913892 nbeb0045L07r CUGI Rice BAC Library (... 50 0.001
gb|D46824.1|D46824 RICS11739A Rice green shoot Oryza sativa... 50 0.001
gb|CB641167.1|CB641167 OSJNEa18C01.f OSJNEa Oryza sativa (j... 50 0.001
gb|CB641197.1|CB641197 OSJNEa18D17.f OSJNEa Oryza sativa (j... 50 0.001
dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP003748.4| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01015403.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AQ916163.1|AQ916163 nbeb0061B14r CUGI Rice BAC Library (... 46 0.021
gb|D40691.1|D40691 RICS2805A Rice shoot Oryza sativa (japon... 46 0.021
gb|C26272.1|C26272 C26272 Rice callus cDNA Oryza sativa (ja... 46 0.021
gb|AF030052.1|AF030052 Oryza sativa subsp. japonica RSW1-li... 46 0.021
gb|AC132494.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
dbj|AK067850.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.021
gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 ... 46 0.021
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|AC135426.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
gb|AACV01011005.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.021
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 46 0.021
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 46 0.021
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.021
dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
>dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1134_A07,
*** SEQUENCING IN PROGRESS ***
Length = 146543
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 79814 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 79755
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 79754 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 79695
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 79694 acatagcaggaaaccttttcaac 79672
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0669H03
Length = 167878
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 63273 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 63214
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 63213 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 63154
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 63153 acatagcaggaaaccttttcaac 63131
>gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015596, whole
genome shotgun sequence
Length = 13414
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Plus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 7068 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 7127
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 7128 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 7187
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 7188 acatagcaggaaaccttttcaac 7210
>ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3746
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 1372 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 1313
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 1312 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 1253
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 1252 acatagcaggaaaccttttcaac 1230
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 8486877 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 8486818
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 8486817 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 8486758
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 8486757 acatagcaggaaaccttttcaac 8486735
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 5844049 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 5844089
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 2391177 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 2391118
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 2391117 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 2391058
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 2391057 acatagcaggaaaccttttcaac 2391035
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 8444802 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 8444743
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 8444742 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 8444683
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 8444682 acatagcaggaaaccttttcaac 8444660
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 12878133 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 12878192
Query: 519 aggataat 526
|||||||
Sbjct: 12878193 tggataat 12878200
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 5799261 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 5799301
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 77.8 bits (39), Expect = 6e-012
Identities = 117/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 8530805 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 8530746
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||||||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 8530745 gcaaattcagatgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 8530686
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 8530685 acatagcaggaaaccttttcaac 8530663
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 13691265 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 13691324
Query: 519 aggataat 526
|||||||
Sbjct: 13691325 tggataat 13691332
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 5887977 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 5888017
>gb|D41261.1|D41261 RICS3630A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 461
Score = 73.8 bits (37), Expect = 9e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 446 atgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagc 505
||||||||| ||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 457 atgtttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaaacatagcagg 398
Query: 506 aaactttatcaac 518
|||| || |||||
Sbjct: 397 aaaccttttcaac 385
>gb|AQ049866.1|AQ049866 nbxb0002cG08f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0002N15f, DNA sequence
Length = 680
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 220 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 279
Query: 519 aggataat 526
|||||||
Sbjct: 280 tggataat 287
>gb|D47622.1|D47622 RICS13225A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 461
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 100 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 41
Query: 519 aggataat 526
|||||||
Sbjct: 40 tggataat 33
>gb|CB637086.1|CB637086 OSJNEa03E07.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa03E07 5', mRNA sequence
Length = 490
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 207 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 148
Query: 519 aggataat 526
|||||||
Sbjct: 147 tggataat 140
>gb|CB639904.1|CB639904 OSJNEa12H04.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa12H04 5', mRNA sequence
Length = 502
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 197 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 138
Query: 519 aggataat 526
|||||||
Sbjct: 137 tggataat 130
>gb|CB640086.1|CB640086 OSJNEa13D08.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa13D08 5', mRNA sequence
Length = 488
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 207 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 148
Query: 519 aggataat 526
|||||||
Sbjct: 147 tggataat 140
>gb|CB671068.1|CB671068 OSJNEe04H10.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04H10 5', mRNA sequence
Length = 792
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 70 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaacattatcaac 11
Query: 519 aggataat 526
|||||||
Sbjct: 10 tggataat 3
>gb|CB676377.1|CB676377 OSJNEe12J14.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12J14 5', mRNA sequence
Length = 765
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 709 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 650
Query: 519 aggataat 526
|||||||
Sbjct: 649 tggataat 642
>gb|CB677472.1|CB677472 OSJNEe14G24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14G24 5', mRNA sequence
Length = 795
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 633 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 574
Query: 519 aggataat 526
|||||||
Sbjct: 573 tggataat 566
>gb|CF307212.1|CF307212 HDA1--06-B04.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--06-B04, mRNA sequence
Length = 553
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 319 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 260
Query: 519 aggataat 526
|||||||
Sbjct: 259 tggataat 252
>dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F14, full
insert sequence
Length = 3221
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 573 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 514
Query: 519 aggataat 526
|||||||
Sbjct: 513 tggataat 506
>dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D15, full
insert sequence
Length = 4208
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 1560 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 1501
Query: 519 aggataat 526
|||||||
Sbjct: 1500 tggataat 1493
>dbj|AK120236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043M21, full
insert sequence
Length = 2931
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 1483 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 1424
Query: 519 aggataat 526
|||||||
Sbjct: 1423 tggataat 1416
>dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086F23, full
insert sequence
Length = 4127
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 1479 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 1420
Query: 519 aggataat 526
|||||||
Sbjct: 1419 tggataat 1412
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409D09
Length = 150485
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 42257 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 42316
Query: 519 aggataat 526
|||||||
Sbjct: 42317 tggataat 42324
>gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015914, whole
genome shotgun sequence
Length = 29977
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 14837 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 14896
Query: 519 aggataat 526
|||||||
Sbjct: 14897 tggataat 14904
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 1471928 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 1471987
Query: 519 aggataat 526
|||||||
Sbjct: 1471988 tggataat 1471995
>gb|CH401223.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000060 genomic
scaffold, whole genome shotgun sequence
Length = 1552265
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 459 tgcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaac 518
||||||||| || |||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct: 1444656 tgcttcaaatgtcagcattgcagcaccatcatcagagacatagcatgaaaccttatcaac 1444715
Query: 519 aggataat 526
|||||||
Sbjct: 1444716 tggataat 1444723
>dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D04, full
insert sequence
Length = 3746
Score = 69.9 bits (35), Expect = 1e-009
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 376 taccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattttcgt 435
||||| || ||||| ||||||||||| ||| || || ||||| || |||||||| |
Sbjct: 1372 taccactctggagcacgaggctcgatattgaactttttgcagaaagggacccatttcttt 1313
Query: 436 gcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatccgac 495
|||||| | ||| ||||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 1312 gcaaattcagatgcttctgacagtgcttcaaatgtgagcattgcagcaccatcatcagaa 1253
Query: 496 acatagcagcaaactttatcaac 518
||||||||| |||| || |||||
Sbjct: 1252 acatagcaggaaaccttttcaac 1230
>dbj|AK058615.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B02, full
insert sequence
Length = 856
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 370 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 311
Query: 534 nagtatgga 542
|| |||||
Sbjct: 310 aaggatgga 302
Score = 42.1 bits (21), Expect = 0.33
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 278 gaaccttaaattcttcgtattctctcttcattgcacg 314
|||| ||||||||||| ||||| |||||||| |||||
Sbjct: 566 gaactttaaattcttcatattccctcttcatggcacg 530
>dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003G18, full
insert sequence
Length = 4282
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 1453 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 1394
Query: 534 nagtatgga 542
|| |||||
Sbjct: 1393 aaggatgga 1385
Score = 42.1 bits (21), Expect = 0.33
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 278 gaaccttaaattcttcgtattctctcttcattgcacg 314
|||| ||||||||||| ||||| |||||||| |||||
Sbjct: 1649 gaactttaaattcttcatattccctcttcatggcacg 1613
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 18259 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 18200
Query: 534 nagtatgga 542
|| |||||
Sbjct: 18199 aaggatgga 18191
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence,
complete sequence
Length = 41693
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 9079 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 9138
Query: 534 nagtatgga 542
|| |||||
Sbjct: 9139 aaggatgga 9147
>gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008134, whole
genome shotgun sequence
Length = 22039
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 14822 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 14763
Query: 534 nagtatgga 542
|| |||||
Sbjct: 14762 aaggatgga 14754
>ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3607
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 1564 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 1505
Query: 534 nagtatgga 542
|| |||||
Sbjct: 1504 aaggatgga 1496
Score = 42.1 bits (21), Expect = 0.33
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 278 gaaccttaaattcttcgtattctctcttcattgcacg 314
|||| ||||||||||| ||||| |||||||| |||||
Sbjct: 1760 gaactttaaattcttcatattccctcttcatggcacg 1724
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 136297 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 136356
Query: 534 nagtatgga 542
|| |||||
Sbjct: 136357 aaggatgga 136365
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 7197126 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 7197185
Query: 534 nagtatgga 542
|| |||||
Sbjct: 7197186 aaggatgga 7197194
Score = 46.1 bits (23), Expect = 0.021
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 457 agtgcttcaaaagtaagcattgcagcaccatcatccgacacatagca 503
||||||||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 8596705 agtgcttcaaatgtcagcatggcagccccatcatcagaaacatagca 8596659
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 34463289 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 34463348
Query: 534 nagtatgga 542
|| |||||
Sbjct: 34463349 aaggatgga 34463357
Score = 46.1 bits (23), Expect = 0.021
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 457 agtgcttcaaaagtaagcattgcagcaccatcatccgacacatagca 503
||||||||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 35862868 agtgcttcaaatgtcagcatggcagccccatcatcagaaacatagca 35862822
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 33570362 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 33570421
Query: 534 nagtatgga 542
|| |||||
Sbjct: 33570422 aaggatgga 33570430
Score = 46.1 bits (23), Expect = 0.021
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 457 agtgcttcaaaagtaagcattgcagcaccatcatccgacacatagca 503
||||||||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 34966157 agtgcttcaaatgtcagcatggcagccccatcatcagaaacatagca 34966111
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 56.0 bits (28), Expect = 2e-005
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||
Sbjct: 33479852 cattgcagctccatcatcagacacatagcaagataccttatcaacagggtaatccacagc 33479911
Query: 534 nagtatgga 542
|| |||||
Sbjct: 33479912 aaggatgga 33479920
Score = 46.1 bits (23), Expect = 0.021
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 457 agtgcttcaaaagtaagcattgcagcaccatcatccgacacatagca 503
||||||||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 34876085 agtgcttcaaatgtcagcatggcagccccatcatcagaaacatagca 34876039
>gb|AQ913892.1|AQ913892 nbeb0045L07r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0045L07r, DNA sequence
Length = 455
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 334 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 374
>gb|D46824.1|D46824 RICS11739A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 402
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 181 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 141
>gb|CB641167.1|CB641167 OSJNEa18C01.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa18C01 5', mRNA sequence
Length = 507
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 439 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 399
>gb|CB641197.1|CB641197 OSJNEa18D17.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa18D17 5', mRNA sequence
Length = 567
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 439 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 399
>dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059I02, full
insert sequence
Length = 3954
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 1647 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 1607
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacg 314
|||||||| |||||||||||||| |||||
Sbjct: 1824 aattcttcatattctctcttcatggcacg 1796
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1559_F09
Length = 87792
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 62651 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 62691
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1136_A05
Length = 120823
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 30425 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 30465
>gb|AACV01015403.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015403, whole
genome shotgun sequence
Length = 31014
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 17720 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 17760
>ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3954
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 1647 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 1607
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacg 314
|||||||| |||||||||||||| |||||
Sbjct: 1824 aattcttcatattctctcttcatggcacg 1796
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| ||||||||||||||||| || || ||||||||
Sbjct: 2982512 tcaaaagtcagcattgcagcaccatcgtcagatacatagca 2982552
>gb|AQ916163.1|AQ916163 nbeb0061B14r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0061B14r, DNA sequence
Length = 524
Score = 46.1 bits (23), Expect = 0.021
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 457 agtgcttcaaaagtaagcattgcagcaccatcatccgacacatagca 503
||||||||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 322 agtgcttcaaatgtcagcatggcagccccatcatcagaaacatagca 368
>gb|D40691.1|D40691 RICS2805A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 335
Score = 46.1 bits (23), Expect = 0.021
Identities = 61/75 (81%)
Strand = Plus / Minus
Query: 483 accatcatccgacacatagcagcaaactttatcaacaggataatnnacagcnagtatgga 542
|||||| || || |||||||| | ||||| |||||||| |||| ||||| || |||||
Sbjct: 161 accatcgtcagaaacatagcatgacactttgtcaacagggtaatccacagccagaatgga 102
Query: 543 caaaactgtgtntgc 557
|||||| |||| |||
Sbjct: 101 caaaacagtgtttgc 87
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 779,354
Number of Sequences: 438736
Number of extensions: 779354
Number of successful extensions: 13238
Number of sequences better than 0.5: 72
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12722
Number of HSP's gapped (non-prelim): 507
length of query: 593
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 572
effective length of database: 2,791,206,460
effective search space: 1596570095120
effective search space used: 1596570095120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)