BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12h10.yg.2.1
(339 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 285 7e-075
dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA... 285 7e-075
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 285 7e-075
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 285 7e-075
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 285 7e-075
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 285 7e-075
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 285 7e-075
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 285 7e-075
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 285 7e-075
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 285 7e-075
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 285 7e-075
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 285 7e-075
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 285 7e-075
dbj|AK060407.1| Oryza sativa (japonica cultivar-group) cDNA... 100 9e-019
gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) c... 100 9e-019
ref|NM_191973.1| Oryza sativa (japonica cultivar-group), p... 100 9e-019
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 100 9e-019
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 100 9e-019
gb|CB662461.1|CB662461 OSJNEd06I07.f OSJNEd Oryza sativa (j... 64 5e-008
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.19
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 42 0.19
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 42 0.19
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.19
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 42 0.19
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 42 0.19
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.19
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 4816 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4757
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 4756 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4697
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4696 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4637
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4636 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4577
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 4576 ggccagtagcacgatacttagcaccgccatgaagaattg 4538
>dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106H04, full
insert sequence
Length = 1501
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 513 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 454
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 453 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 394
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 393 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 334
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 333 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 274
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 273 ggccagtagcacgatacttagcaccgccatgaagaattg 235
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
insert sequence
Length = 5949
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 4720 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4661
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 4660 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4601
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4600 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4541
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4540 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4481
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 4480 ggccagtagcacgatacttagcaccgccatgaagaattg 4442
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
insert sequence
Length = 5396
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 4405 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4346
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 4345 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4286
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4285 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4226
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4225 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4166
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 4165 ggccagtagcacgatacttagcaccgccatgaagaattg 4127
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
genome shotgun sequence
Length = 23038
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 12657 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 12598
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 12597 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 12538
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 12537 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 12478
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12477 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 12418
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 12417 ggccagtagcacgatacttagcaccgccatgaagaattg 12379
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 31717386 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 31717445
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 31717446 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 31717505
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 31717506 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 31717565
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31717566 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 31717625
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 31717626 ggccagtagcacgatacttagcaccgccatgaagaattg 31717664
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 27681964 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 27682023
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 27682024 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 27682083
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 27682084 atattttgcacctccatgaagaattg 27682109
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 19379784 tattttgcaccaccatgaagtattg 19379808
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5373
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 4681 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4622
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 4621 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4562
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4561 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4502
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4501 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4442
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 4441 ggccagtagcacgatacttagcaccgccatgaagaattg 4403
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 6164769 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 6164828
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 6164829 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 6164888
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 6164889 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 6164948
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6164949 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 6165008
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 6165009 ggccagtagcacgatacttagcaccgccatgaagaattg 6165047
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 2129347 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 2129406
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 2129407 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 2129466
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 2129467 atattttgcacctccatgaagaattg 2129492
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 149739 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 149798
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 149799 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 149858
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 149859 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 149918
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 149919 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 149978
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 149979 ggccagtagcacgatacttagcaccgccatgaagaattg 150017
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 50448 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 50507
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 50508 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 50567
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 50568 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 50627
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 50628 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 50687
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 50688 ggccagtagcacgatacttagcaccgccatgaagaattg 50726
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 6067412 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 6067471
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 6067472 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 6067531
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 6067532 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 6067591
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6067592 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 6067651
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 6067652 ggccagtagcacgatacttagcaccgccatgaagaattg 6067690
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 2069798 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 2069857
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 2069858 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 2069917
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 2069918 atattttgcacctccatgaagaattg 2069943
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 31269133 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 31269192
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 31269193 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 31269252
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 31269253 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 31269312
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31269313 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 31269372
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 31269373 ggccagtagcacgatacttagcaccgccatgaagaattg 31269411
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 27271519 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 27271578
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 27271579 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 27271638
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 27271639 atattttgcacctccatgaagaattg 27271664
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 19056570 tattttgcaccaccatgaagtattg 19056594
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 285 bits (144), Expect = 7e-075
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 31636716 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 31636775
Query: 61 ataccaccagaaaccagctagannnnnnnnnnnntatgtaaacaagtgtattcttggcaa 120
||||||| |||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 31636776 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 31636835
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 31636836 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 31636895
Query: 181 ggcccctagcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31636896 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 31636955
Query: 241 gnnnagtagcacggtattttgcaccaccatgaaggattg 279
| ||||||||| || || ||||| |||||||| ||||
Sbjct: 31636956 ggccagtagcacgatacttagcaccgccatgaagaattg 31636994
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 27601294 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 27601353
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 27601354 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 27601413
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 27601414 atattttgcacctccatgaagaattg 27601439
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 19301067 tattttgcaccaccatgaagtattg 19301091
>dbj|AK060407.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D06, full
insert sequence
Length = 1749
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 604 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 545
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 544 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 485
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 484 atattttgcacctccatgaagaattg 459
>gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002091, whole
genome shotgun sequence
Length = 57249
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 41945 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 41886
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 41885 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 41826
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 41825 atattttgcacctccatgaagaattg 41800
>ref|NM_191973.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5310
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 4482 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 4423
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 4422 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 4363
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 4362 atattttgcacctccatgaagaattg 4337
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 68588 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 68647
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 68648 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 68707
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 68708 atattttgcacctccatgaagaattg 68733
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 99.6 bits (50), Expect = 9e-019
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 9860 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 9919
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacg 253
|||| | |||||||| ||||| | ||||||| ||||||||||||||| ||| || ||
Sbjct: 9920 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 9979
Query: 254 gtattttgcaccaccatgaaggattg 279
||||||||||| |||||||| ||||
Sbjct: 9980 atattttgcacctccatgaagaattg 10005
>gb|CB662461.1|CB662461 OSJNEd06I07.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06I07 5', mRNA sequence
Length = 718
Score = 63.9 bits (32), Expect = 5e-008
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 99 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 40
Query: 194 cagcntgtaattttcagcaaaactcttgtgctgcacaac 232
|||| | |||||||| ||||| | ||||||| ||||||
Sbjct: 39 cagcctataattttctgcaaattttttgtgctccacaac 1
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 633 tattttgcaccaccatgaagtattg 609
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 8032 tattttgcaccaccatgaagtattg 8056
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 4682 tattttgcaccaccatgaagtattg 4658
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 2298016 tattttgcaccaccatgaagtattg 2298040
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 120688 tattttgcaccaccatgaagtattg 120712
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 29072 tattttgcaccaccatgaagtattg 29096
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattg 279
|||||||||||||||||||| ||||
Sbjct: 2431447 tattttgcaccaccatgaagtattg 2431471
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 375,443
Number of Sequences: 438736
Number of extensions: 375443
Number of successful extensions: 7359
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7097
Number of HSP's gapped (non-prelim): 262
length of query: 339
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 319
effective length of database: 2,791,645,196
effective search space: 890534817524
effective search space used: 890534817524
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)