BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL28h07.yg.2.1
(277 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB659583.1|CB659583 OSJNEc16L01.f OSJNEc Oryza sativa (j... 278 1e-072
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 278 1e-072
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 278 1e-072
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 278 1e-072
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 278 1e-072
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 278 1e-072
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 278 1e-072
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 278 1e-072
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 278 1e-072
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 278 1e-072
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 220 3e-055
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 220 3e-055
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 220 3e-055
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 220 3e-055
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 220 3e-055
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 220 3e-055
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 220 3e-055
dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA... 117 3e-024
gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) c... 90 7e-016
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 90 7e-016
ref|NM_193203.1| Oryza sativa (japonica cultivar-group), p... 90 7e-016
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 90 7e-016
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 90 7e-016
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 90 7e-016
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 90 7e-016
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 90 7e-016
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 70 7e-010
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 70 7e-010
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 70 7e-010
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 70 7e-010
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 52 2e-004
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 52 2e-004
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 50 6e-004
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 50 6e-004
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 50 6e-004
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 50 6e-004
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 50 6e-004
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 50 6e-004
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 50 6e-004
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.002
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.002
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.002
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 48 0.002
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AG205403.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.010
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 46 0.010
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 46 0.010
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 46 0.010
dbj|AP005614.2| Oryza sativa (japonica cultivar-group) geno... 46 0.010
gb|AACV01003740.1| Oryza sativa (japonica cultivar-group) c... 46 0.010
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 46 0.010
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.010
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB155607.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.038
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 44 0.038
dbj|AG213125.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG213253.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG214847.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG214966.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG215047.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG024553.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG024559.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG024977.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG025117.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG025364.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG206043.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG207310.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB155391.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB155466.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB155599.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB155642.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB155981.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB156159.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB156243.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB156331.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB156813.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB156889.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB156901.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157065.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157086.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157374.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157397.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157497.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157771.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157787.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB158032.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG024547.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG024890.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AG025126.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB157571.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.15
dbj|AB071805.1| Oryza sativa (japonica cultivar-group) mRNA... 42 0.15
dbj|AP005649.3| Oryza sativa (japonica cultivar-group) geno... 42 0.15
gb|AACV01003332.1| Oryza sativa (japonica cultivar-group) c... 42 0.15
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 42 0.15
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 42 0.15
>gb|CB659583.1|CB659583 OSJNEc16L01.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L01 5', mRNA sequence
Length = 827
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 711 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 652
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 651 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 592
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 591 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 532
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 531 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 472
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 471 gcagctgcatcagtac 456
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 1921 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 1862
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 1861 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 1802
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 1801 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 1742
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 1741 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 1682
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 1681 gcagctgcatcagtac 1666
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 92071 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 92012
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 92011 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 91952
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 91951 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 91892
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 91891 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 91832
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 91831 gcagctgcatcagtac 91816
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 11902 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 11843
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 11842 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 11783
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 11782 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 11723
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 11722 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 11663
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 11662 gcagctgcatcagtac 11647
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 6426 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 6367
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 6366 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 6307
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 6306 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 6247
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 6246 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 6187
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 6186 gcagctgcatcagtac 6171
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 5104 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 5045
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 5044 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 4985
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 4984 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 4925
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 4924 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 4865
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 4864 gcagctgcatcagtac 4849
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 1656629 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 1656570
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 1656569 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 1656510
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 1656509 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 1656450
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 1656449 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 1656390
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 1656389 gcagctgcatcagtac 1656374
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 22450535 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 22450476
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 22450475 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 22450416
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 22450415 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 22450356
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 22450355 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 22450296
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 22450295 gcagctgcatcagtac 22450280
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 35903599 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 35903540
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 35903539 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 35903480
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 35903479 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 35903420
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 35903419 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 35903360
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 35903359 gcagctgcatcagtac 35903344
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaa 226
||||||| ||| || ||||||||||||||||||||
Sbjct: 8448112 tagtgagcttttgttccaagagagaatgtgaagaa 8448078
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 201 ttggtcccaagagagaatgtgaagaacac 229
|||||||||||| |||| |||||||||||
Sbjct: 2437434 ttggtcccaagatagaaagtgaagaacac 2437462
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 278 bits (140), Expect = 1e-072
Identities = 227/256 (88%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 35821356 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 35821297
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 35821296 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 35821237
Query: 121 catggaacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcg 180
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 35821236 catggaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcg 35821177
Query: 181 tggttccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaact 240
| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 35821176 ttgttccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaact 35821117
Query: 241 ggagctgcataagtac 256
| |||||||| |||||
Sbjct: 35821116 gcagctgcatcagtac 35821101
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaa 226
||||||| ||| || ||||||||||||||||||||
Sbjct: 8314774 tagtgagcttttgttccaagagagaatgtgaagaa 8314740
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 201 ttggtcccaagagagaatgtgaagaacac 229
|||||||||||| |||| |||||||||||
Sbjct: 2392705 ttggtcccaagatagaaagtgaagaacac 2392733
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 220 bits (111), Expect = 3e-055
Identities = 216/251 (86%)
Strand = Plus / Plus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 156344 atagcccctctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctca 156403
Query: 66 atgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatgg 125
|| ||||| ||||||||||| || ||||| | ||| || || |||||||||||||||||
Sbjct: 156404 atacccttgacaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatga 156463
Query: 126 aacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggtt 185
|||||||||||||||||||| || |||||||||||||||||||| || || | || ||
Sbjct: 156464 aacaccacaaatccacgcccagtggctctatattcagctcctccgtggagtaatgtcctt 156523
Query: 186 ccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagc 245
||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 156524 ccgtaataatgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagt 156583
Query: 246 tgcataagtac 256
|||||||||||
Sbjct: 156584 tgcataagtac 156594
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 220 bits (111), Expect = 3e-055
Identities = 216/251 (86%)
Strand = Plus / Plus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 156344 atagcccctctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctca 156403
Query: 66 atgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatgg 125
|| ||||| ||||||||||| || ||||| | ||| || || |||||||||||||||||
Sbjct: 156404 atacccttgacaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatga 156463
Query: 126 aacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggtt 185
|||||||||||||||||||| || |||||||||||||||||||| || || | || ||
Sbjct: 156464 aacaccacaaatccacgcccagtggctctatattcagctcctccgtggagtaatgtcctt 156523
Query: 186 ccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagc 245
||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 156524 ccgtaataatgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagt 156583
Query: 246 tgcataagtac 256
|||||||||||
Sbjct: 156584 tgcataagtac 156594
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 220 bits (111), Expect = 3e-055
Identities = 216/251 (86%)
Strand = Plus / Plus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 17546 atagcccctctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctca 17605
Query: 66 atgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatgg 125
|| ||||| ||||||||||| || ||||| | ||| || || |||||||||||||||||
Sbjct: 17606 atacccttgacaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatga 17665
Query: 126 aacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggtt 185
|||||||||||||||||||| || |||||||||||||||||||| || || | || ||
Sbjct: 17666 aacaccacaaatccacgcccagtggctctatattcagctcctccgtggagtaatgtcctt 17725
Query: 186 ccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagc 245
||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 17726 ccgtaataatgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagt 17785
Query: 246 tgcataagtac 256
|||||||||||
Sbjct: 17786 tgcataagtac 17796
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 220 bits (111), Expect = 3e-055
Identities = 216/251 (86%)
Strand = Plus / Minus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 4173 atagcccctctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctca 4114
Query: 66 atgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatgg 125
|| ||||| ||||||||||| || ||||| | ||| || || |||||||||||||||||
Sbjct: 4113 atacccttgacaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatga 4054
Query: 126 aacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggtt 185
|||||||||||||||||||| || |||||||||||||||||||| || || | || ||
Sbjct: 4053 aacaccacaaatccacgcccagtggctctatattcagctcctccgtggagtaatgtcctt 3994
Query: 186 ccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagc 245
||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 3993 ccgtaataatgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagt 3934
Query: 246 tgcataagtac 256
|||||||||||
Sbjct: 3933 tgcataagtac 3923
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 220 bits (111), Expect = 3e-055
Identities = 216/251 (86%)
Strand = Plus / Plus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 11851002 atagcccctctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctca 11851061
Query: 66 atgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatgg 125
|| ||||| ||||||||||| || ||||| | ||| || || |||||||||||||||||
Sbjct: 11851062 atacccttgacaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatga 11851121
Query: 126 aacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggtt 185
|||||||||||||||||||| || |||||||||||||||||||| || || | || ||
Sbjct: 11851122 aacaccacaaatccacgcccagtggctctatattcagctcctccgtggagtaatgtcctt 11851181
Query: 186 ccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagc 245
||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 11851182 ccgtaataatgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagt 11851241
Query: 246 tgcataagtac 256
|||||||||||
Sbjct: 11851242 tgcataagtac 11851252
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 220 bits (111), Expect = 3e-055
Identities = 216/251 (86%)
Strand = Plus / Plus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 29549739 atagcccctctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctca 29549798
Query: 66 atgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatgg 125
|| ||||| ||||||||||| || ||||| | ||| || || |||||||||||||||||
Sbjct: 29549799 atacccttgacaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatga 29549858
Query: 126 aacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggtt 185
|||||||||||||||||||| || |||||||||||||||||||| || || | || ||
Sbjct: 29549859 aacaccacaaatccacgcccagtggctctatattcagctcctccgtggagtaatgtcctt 29549918
Query: 186 ccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagc 245
||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 29549919 ccgtaataatgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagt 29549978
Query: 246 tgcataagtac 256
|||||||||||
Sbjct: 29549979 tgcataagtac 29549989
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 220 bits (111), Expect = 3e-055
Identities = 216/251 (86%)
Strand = Plus / Plus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 30518983 atagcccctctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctca 30519042
Query: 66 atgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatgg 125
|| ||||| ||||||||||| || ||||| | ||| || || |||||||||||||||||
Sbjct: 30519043 atacccttgacaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatga 30519102
Query: 126 aacaccacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggtt 185
|||||||||||||||||||| || |||||||||||||||||||| || || | || ||
Sbjct: 30519103 aacaccacaaatccacgcccagtggctctatattcagctcctccgtggagtaatgtcctt 30519162
Query: 186 ccgtagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagc 245
||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 30519163 ccgtaataatgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagt 30519222
Query: 246 tgcataagtac 256
|||||||||||
Sbjct: 30519223 tgcataagtac 30519233
>dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F07, full
insert sequence
Length = 1292
Score = 117 bits (59), Expect = 3e-024
Identities = 113/131 (86%)
Strand = Plus / Minus
Query: 1 acgcaatagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatca 60
|||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||
Sbjct: 131 acgcgatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagca 72
Query: 61 gttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttgg 120
||||| ||||| ||||||||||| || || || | |||||| ||||| ||||| ||||
Sbjct: 71 actcaatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttgg 12
Query: 121 catggaacacc 131
|||||||||||
Sbjct: 11 catggaacacc 1
>gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001409, whole
genome shotgun sequence
Length = 30879
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 8963 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 9022
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 9023 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 9082
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 9083 aaaaacacagatgccagctgaagctgcat 9111
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 19334645 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 19334704
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 19334705 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 19334764
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 19334765 aaaaacacagatgccagctgaagctgcat 19334793
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 19379700 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 19379759
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 19379760 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 19379819
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 19379820 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 19379866
>ref|NM_193203.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1809
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 770 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 711
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 710 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 651
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 650 aaaaacacagatgccagctgaagctgcat 622
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 2252877 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 2252936
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 2252937 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 2252996
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 2252997 aaaaacacagatgccagctgaagctgcat 2253025
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 2297932 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 2297991
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 2297992 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 2298051
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 2298052 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 2298098
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 75549 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 75608
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 75609 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 75668
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 75669 aaaaacacagatgccagctgaagctgcat 75697
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 120604 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 120663
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 120664 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 120723
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 120724 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 120770
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 2385763 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 2385822
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 2385823 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 2385882
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 2385883 aaaaacacagatgccagctgaagctgcat 2385911
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 2431363 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 2431422
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 2431423 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 2431482
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 2431483 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 2431529
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 19010886 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 19010945
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 19010946 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 19011005
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 19011006 aaaaacacagatgccagctgaagctgcat 19011034
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 19056486 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 19056545
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 19056546 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 19056605
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 19056606 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 19056652
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 89.7 bits (45), Expect = 7e-016
Identities = 123/149 (82%)
Strand = Plus / Plus
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||| |||| |
Sbjct: 19255928 taattgtcagcaaactttgcatggtagacaacaaatccacgacctgtaggtctgtattta 19255987
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
|| || ||||| || | || ||||||||||||| |||||||| ||||| |||||||
Sbjct: 19255988 gccccgccatgcagtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtg 19256047
Query: 222 aagaacacagatgctaactggagctgcat 250
|| ||||||||||| | ||| ||||||||
Sbjct: 19256048 aaaaacacagatgccagctgaagctgcat 19256076
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 19300983 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 19301042
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 19301043 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 19301102
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 19301103 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 19301149
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Minus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 717 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 658
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 657 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 598
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 597 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 551
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 7948 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 8007
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 8008 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 8067
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 8068 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 8114
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Minus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 4766 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 4707
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 4706 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 4647
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 4646 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 4600
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 69.9 bits (35), Expect = 7e-010
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||| || ||||||| || ||||||||||||||||| |||||| |||
Sbjct: 28988 ttcacaaagtggctccgggaatacatccggtaattctcagcaaactttgcatggcgcaca 29047
Query: 132 acaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtag 191
||||| || || |||||| ||||||||| || || ||||| || | || |||| |||
Sbjct: 29048 acaaacccccggcctgtacctctatattttgcaccaccatgaagtattgttcttccatag 29107
Query: 192 tagtgagttttggtcccaagagagaatgtgaagaacacagatgctaa 238
|||||||| || || |||||| ||| |||||||| ||||| |||||
Sbjct: 29108 tagtgagtcttcgttccaagatggaaagtgaagaaaacagaagctaa 29154
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||||
Sbjct: 199 aagtacctgcccgggcggccgctcga 224
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI35, mRNA
sequence
Length = 350
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 252 agtacctgcccgggcggccgctcgaa 277
||||||||||||||||||||||||||
Sbjct: 26 agtacctgcccgggcggccgctcgaa 1
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 278 agtacctgcccgggcggccgctcga 302
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 144 agtacctgcccgggcggccgctcga 168
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 268 agtacctgcccgggcggccgctcga 292
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 245 agtacctgcccgggcggccgctcga 269
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 146 agtacctgcccgggcggccgctcga 170
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 419 agtacctgcccgggcggccgctcga 443
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 314 agtacctgcccgggcggccgctcga 338
>dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00123T, 3'
flanking sequence of Tos17 insertion in rice strain
H0449, genomic survey sequence
Length = 381
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctc 274
||||||||||||||||||||||||
Sbjct: 352 aagtacctgcccgggcggccgctc 375
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||
Sbjct: 207 gtacctgcccgggcggccgctcga 230
>dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27966T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0587, genomic survey sequence
Length = 359
Score = 48.1 bits (24), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
||| |||||||||||||||||||||||
Sbjct: 323 aagnacctgcccgggcggccgctcgaa 349
>dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA, clone:T28954T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1070, genomic survey sequence
Length = 459
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcg 275
||||||||||||||||||||||||
Sbjct: 424 agtacctgcccgggcggccgctcg 447
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgctcga 276
|||||||||||||||||||||||
Sbjct: 291 tacctgcccgggcggccgctcga 313
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgctcga 276
|||||||||||||||||||||||
Sbjct: 116 tacctgcccgggcggccgctcga 138
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgctcga 276
|||||||||||||||||||||||
Sbjct: 361 tacctgcccgggcggccgctcga 383
>dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00128T, 3'
flanking sequence of Tos17 insertion in rice strain
H0450, genomic survey sequence
Length = 222
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctc 274
|||||||||||||||||||||||
Sbjct: 200 agtacctgcccgggcggccgctc 222
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgctcga 276
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
>dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02943T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0384, genomic survey sequence
Length = 280
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgctcga 276
|||||||||||||||||||||||
Sbjct: 244 tacctgcccgggcggccgctcga 266
>dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06795T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2764, genomic survey sequence
Length = 183
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgctcga 276
|||||||||||||||||||||||
Sbjct: 141 tacctgcccgggcggccgctcga 163
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 359,179
Number of Sequences: 438736
Number of extensions: 359179
Number of successful extensions: 7161
Number of sequences better than 0.5: 157
Number of HSP's better than 0.5 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6772
Number of HSP's gapped (non-prelim): 374
length of query: 277
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 257
effective length of database: 2,791,645,196
effective search space: 717452815372
effective search space used: 717452815372
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)