BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB675258.1|CB675258 OSJNEe10O07.r OSJNEe Oryza sativa (j... 94 9e-017
gb|CV728643.1|CV728643 FLO--01-B11.g1 Rice flower lambda ph... 94 9e-017
dbj|AK072259.1| Oryza sativa (japonica cultivar-group) cDNA... 94 9e-017
dbj|AK120265.1| Oryza sativa (japonica cultivar-group) cDNA... 94 9e-017
gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06... 94 9e-017
gb|AACV01021752.1| Oryza sativa (japonica cultivar-group) c... 94 9e-017
ref|NM_196933.1| Oryza sativa (japonica cultivar-group) put... 94 9e-017
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 94 9e-017
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 94 9e-017
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 94 9e-017
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 94 9e-017
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 94 9e-017
gb|D40673.1|D40673 RICS2778A Rice shoot Oryza sativa (japon... 70 1e-009
gb|AU082309.1|AU082309 AU082309 Rice panicle at flowering s... 70 1e-009
gb|CB643325.1|CB643325 OSJNEb03P11.r OSJNEb Oryza sativa (j... 70 1e-009
gb|CB661448.1|CB661448 OSJNEd04F08.r OSJNEd Oryza sativa (j... 70 1e-009
dbj|AK121170.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AP005420.3| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
dbj|AP005579.3| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|AACV01020011.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|CF277079.1|CF277079 14ETL--02-H16.g1 Rice etiolated leaf... 58 5e-006
gb|CV721269.1|CV721269 YBH--03-H23.b1 Rice before heading y... 54 8e-005
gb|D24381.1|D24381 RICR1814A Rice root Oryza sativa (japoni... 50 0.001
gb|AU096339.1|AU096339 AU096339 Rice green shoot Oryza sati... 50 0.001
gb|AC132494.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AK060079.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AC135426.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AACV01011005.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|CB639145.1|CB639145 OSJNEa08I15.r OSJNEa Oryza sativa (j... 46 0.019
dbj|AK060838.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.29
>gb|CB675258.1|CB675258 OSJNEe10O07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10O07 3', mRNA sequence
Length = 786
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 349 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 408
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 409 agcgggcccca 419
>gb|CV728643.1|CV728643 FLO--01-B11.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-B11,
mRNA sequence
Length = 319
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 175 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 116
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 115 agcgggcccca 105
>dbj|AK072259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009D02, full
insert sequence
Length = 3426
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 3074 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 3015
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 3014 agcgggcccca 3004
>dbj|AK120265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D23, full
insert sequence
Length = 612
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 300 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 241
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 240 agcgggcccca 230
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
sequence
Length = 162339
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 95761 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 95702
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 95701 agcgggcccca 95691
>gb|AACV01021752.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021752, whole
genome shotgun sequence
Length = 96066
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 28309 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 28368
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 28369 agcgggcccca 28379
>ref|NM_196933.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase
(OSJNBa0006L06.10), mRNA
Length = 3408
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 3041 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 2982
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 2981 agcgggcccca 2971
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 3483675 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 3483616
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 3483615 agcgggcccca 3483605
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 4666144 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 4666085
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 4666084 agcgggcccca 4666074
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 15531938 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 15531879
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 15531878 agcgggcccca 15531868
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 16751244 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 16751185
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 16751184 agcgggcccca 16751174
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 93.7 bits (47), Expect = 9e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| |
Sbjct: 16760284 cccttgaggaaggggtagaggtggaggatgacccagaaggagaagaagagcttcccgaac 16760225
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 16760224 agcgggcccca 16760214
>gb|D40673.1|D40673 RICS2778A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 357
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 142 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 83
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 82 agcgggcccca 72
>gb|AU082309.1|AU082309 AU082309 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1220, mRNA sequence
Length = 658
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 291 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 232
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 231 agcgggcccca 221
>gb|CB643325.1|CB643325 OSJNEb03P11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03P11 3', mRNA sequence
Length = 792
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 335 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 394
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 395 agcgggcccca 405
>gb|CB661448.1|CB661448 OSJNEd04F08.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd04F08 3', mRNA sequence
Length = 835
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 387 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 446
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 447 agcgggcccca 457
>dbj|AK121170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081B08, full
insert sequence
Length = 3631
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 3112 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 3053
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 3052 agcgggcccca 3042
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0418B08
Length = 165909
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 9912 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 9853
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 9852 agcgggcccca 9842
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1740_D06
Length = 187410
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 124699 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 124640
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 124639 agcgggcccca 124629
>gb|AACV01020011.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020011, whole
genome shotgun sequence
Length = 29808
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 14629 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 14688
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 14689 agcgggcccca 14699
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 922526 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 922467
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 922466 agcgggcccca 922456
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 4554573 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 4554514
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 4554513 agcgggcccca 4554503
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 14028384 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 14028325
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 14028324 agcgggcccca 14028314
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 15230723 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagcttcccgaag 15230664
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 15230663 agcgggcccca 15230653
>gb|CF277079.1|CF277079 14ETL--02-H16.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-H16, mRNA sequence
Length = 488
Score = 58.0 bits (29), Expect = 5e-006
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtg-gaggtggaggacgacccagaaggagaagaacagcttgccgag 477
||||||||||| |||| |||||||| || ||||||||||| |||||| ||||| ||||
Sbjct: 353 cccttgaggaaggggtnagaggtggacgatgacccagaaggcgaagaagagcttcccgaa 412
Query: 478 cagcgggcccca 489
|||||||||||
Sbjct: 413 gagcgggcccca 424
>gb|CV721269.1|CV721269 YBH--03-H23.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-H23, mRNA sequence
Length = 432
Score = 54.0 bits (27), Expect = 8e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || ||||||||||| |||||| || | ||||
Sbjct: 204 cccttgaggaaggggtagaggtggacgatgacccagaaggcgaagaagagaataccgaag 145
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 144 agcgggcccca 134
>gb|D24381.1|D24381 RICR1814A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1814_1A, mRNA sequence
Length = 394
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 271 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 219
>gb|AU096339.1|AU096339 AU096339 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13532, mRNA sequence
Length = 714
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 120 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 68
>gb|AC132494.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0681F01, ***
SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 50149
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 10208 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 10260
>dbj|AK060079.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-C08, full
insert sequence
Length = 1097
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 514 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 462
>dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013125H24, full
insert sequence
Length = 3802
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 3263 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 3211
>dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B06, full
insert sequence
Length = 3764
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 3263 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 3211
>dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P03, full
insert sequence
Length = 3732
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 3263 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 3211
>dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125F05, full
insert sequence
Length = 3801
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 3263 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 3211
>dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034D20, full
insert sequence
Length = 3897
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 3263 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 3211
>dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085K01, full
insert sequence
Length = 3768
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 3263 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 3211
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0029B02, complete sequence
Length = 156649
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 17288 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 17340
>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08,
complete sequence
Length = 144781
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 128445 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 128497
>gb|AACV01011005.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011005, whole
genome shotgun sequence
Length = 27493
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 13666 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 13718
>ref|NT_107223.1| Oryza sativa (japonica cultivar-group)
Length = 1494033
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 584093 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 584145
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 4397642 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 4397694
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 4397642 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 4397694
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| ||||||||| |||||
Sbjct: 4506821 cccttgaggaaggggtagagatggaggatcacccagatggagaagaagagctt 4506873
>gb|CB639145.1|CB639145 OSJNEa08I15.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa08I15 3', mRNA sequence
Length = 534
Score = 46.1 bits (23), Expect = 0.019
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| | |||||| |||| ||| || ||||| ||||
Sbjct: 308 cccttgaggaaggggtagaggtggaccatgacccaaaaggcgaaaaagagcttcccgaag 367
Query: 479 agcgggcccca 489
|||||||||||
Sbjct: 368 agcgggcccca 378
>dbj|AK060838.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D02, full
insert sequence
Length = 1426
Score = 42.1 bits (21), Expect = 0.29
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| |||||| ||||||| ||||||||| |||||
Sbjct: 940 cccttgaggaaggggtagagacggaggatcacccagatggagaagaagagctt 888
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 706,750
Number of Sequences: 438736
Number of extensions: 706750
Number of successful extensions: 22286
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21832
Number of HSP's gapped (non-prelim): 454
length of query: 520
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 499
effective length of database: 2,791,206,460
effective search space: 1392812023540
effective search space used: 1392812023540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)