BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germinati... 180 3e-043
gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing t... 180 3e-043
dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chro... 180 3e-043
dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA... 180 3e-043
dbj|AP004298.4| Oryza sativa (japonica cultivar-group) geno... 180 3e-043
dbj|AP005248.4| Oryza sativa (japonica cultivar-group) geno... 180 3e-043
dbj|AP005824.4| Oryza sativa (japonica cultivar-group) geno... 180 3e-043
gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) c... 180 3e-043
gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) c... 180 3e-043
ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA 180 3e-043
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 180 3e-043
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 180 3e-043
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 180 3e-043
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 180 3e-043
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 180 3e-043
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 180 3e-043
dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA... 172 6e-041
dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA... 172 6e-041
dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA... 172 6e-041
gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 ... 172 6e-041
gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) c... 172 6e-041
ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA 172 6e-041
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 172 6e-041
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 172 6e-041
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 172 6e-041
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 172 6e-041
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 172 6e-041
gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germinati... 157 4e-036
gb|CF311260.1|CF311260 ABF--06-G16.b1 ABF3-overexpressing t... 147 4e-033
gb|CF311164.1|CF311164 ABF--06-E14.b1 ABF3-overexpressing t... 139 9e-031
gb|D24964.1|D24964 RICR2854A Rice root Oryza sativa (japoni... 125 1e-026
gb|AU068488.1|AU068488 AU068488 Rice callus Oryza sativa (j... 121 2e-025
gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing... 121 2e-025
gb|CF323718.1|CF323718 HDN--04-J12.g1 OsHDAC1-overexpressin... 119 8e-025
gb|CB671503.1|CB671503 OSJNEe05B24.f OSJNEe Oryza sativa (j... 101 2e-019
gb|D48053.1|D48053 RICS13983A Rice green shoot Oryza sativa... 98 3e-018
gb|C72423.1|C72423 C72423 Rice panicle at flowering stage O... 96 1e-017
gb|AU032362.1|AU032362 AU032362 Rice root Oryza sativa (jap... 92 2e-016
gb|AU065353.1|AU065353 AU065353 Rice root Oryza sativa (jap... 92 2e-016
gb|D48612.2|D48612 RICS14935A Rice green shoot Oryza sativa... 74 4e-011
gb|CB675258.1|CB675258 OSJNEe10O07.r OSJNEe Oryza sativa (j... 50 6e-004
gb|CV728643.1|CV728643 FLO--01-B11.g1 Rice flower lambda ph... 50 6e-004
dbj|AK072259.1| Oryza sativa (japonica cultivar-group) cDNA... 50 6e-004
dbj|AK120265.1| Oryza sativa (japonica cultivar-group) cDNA... 50 6e-004
gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06... 50 6e-004
gb|AACV01021752.1| Oryza sativa (japonica cultivar-group) c... 50 6e-004
ref|NM_196933.1| Oryza sativa (japonica cultivar-group) put... 50 6e-004
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 50 6e-004
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 50 6e-004
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 6e-004
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 6e-004
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 6e-004
gb|D40673.1|D40673 RICS2778A Rice shoot Oryza sativa (japon... 42 0.16
gb|AU082309.1|AU082309 AU082309 Rice panicle at flowering s... 42 0.16
gb|CB643325.1|CB643325 OSJNEb03P11.r OSJNEb Oryza sativa (j... 42 0.16
gb|CB661448.1|CB661448 OSJNEd04F08.r OSJNEd Oryza sativa (j... 42 0.16
gb|CF277079.1|CF277079 14ETL--02-H16.g1 Rice etiolated leaf... 42 0.16
dbj|AK121170.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.16
dbj|AP005420.3| Oryza sativa (japonica cultivar-group) geno... 42 0.16
dbj|AP005579.3| Oryza sativa (japonica cultivar-group) geno... 42 0.16
gb|AACV01020011.1| Oryza sativa (japonica cultivar-group) c... 42 0.16
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 42 0.16
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.16
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.16
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.16
>gb|CB000645.1|CB000645 S345Q_E04 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 655
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 51 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 110
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 111 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 170
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 171 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 230
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 231 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 290
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 291 tgaatcatggggacctctgttcgggaagctcttctttgc 329
>gb|CF309533.1|CF309533 ABF--03-M03.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-M03, mRNA sequence
Length = 635
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 213 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 272
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 273 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 332
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 333 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 392
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 393 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 452
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 453 tgaatcatggggacctctgttcgggaagctcttctttgc 491
>dbj|AP003945.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1134_A07,
*** SEQUENCING IN PROGRESS ***
Length = 146543
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 81933 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 81992
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 81993 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 82052
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 82053 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 82112
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 82113 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 82172
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 82173 tgaatcatggggacctctgttcgggaagctcttctttgc 82211
>dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C05, full
insert sequence
Length = 1335
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 210 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 269
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 270 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 329
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 330 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 389
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 390 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 449
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 450 tgaatcatggggacctctgttcgggaagctcttctttgc 488
>dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H11, full
insert sequence
Length = 1827
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 779 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 838
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 839 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 898
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 899 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 958
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 959 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 1018
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 1019 cccctcttcgggaagctcttctttgc 1044
>dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F14, full
insert sequence
Length = 3221
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 2173 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 2232
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 2233 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 2292
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 2293 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 2352
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 2353 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 2412
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 2413 cccctcttcgggaagctcttctttgc 2438
>dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013085H01, full
insert sequence
Length = 1867
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 884 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 943
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 944 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 1003
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 1004 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 1063
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 1064 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 1123
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 1124 cccctcttcgggaagctcttctttgc 1149
>dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D15, full
insert sequence
Length = 4208
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 3161 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 3220
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 3221 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 3280
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 3281 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 3340
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 3341 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 3400
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 3401 cccctcttcgggaagctcttctttgc 3426
>dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D04, full
insert sequence
Length = 3746
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 2873 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 2932
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 2933 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 2992
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 2993 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 3052
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 3053 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 3112
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 3113 tgaatcatggggacctctgttcgggaagctcttctttgc 3151
>dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086F23, full
insert sequence
Length = 4127
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 3079 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 3138
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 3139 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 3198
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 3199 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 3258
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 3259 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 3318
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 3319 cccctcttcgggaagctcttctttgc 3344
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409D09
Length = 150485
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 40012 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 39953
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 39952 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 39893
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 39892 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 39833
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 39832 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 39773
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 39772 cccctcttcgggaagctcttctttgc 39747
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0084P08
Length = 158656
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 156639 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 156580
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 156579 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 156520
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 156519 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 156460
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 156459 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 156400
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 156399 cccctcttcgggaagctcttctttgc 156374
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0669H03
Length = 167878
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 65392 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 65451
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 65452 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 65511
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 65512 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 65571
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 65572 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 65631
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 65632 tgaatcatggggacctctgttcgggaagctcttctttgc 65670
>gb|AACV01015596.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015596, whole
genome shotgun sequence
Length = 13414
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Minus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 4949 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 4890
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 4889 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 4830
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 4829 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 4770
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 4769 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 4710
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 4709 tgaatcatggggacctctgttcgggaagctcttctttgc 4671
>gb|AACV01015914.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015914, whole
genome shotgun sequence
Length = 29977
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 12592 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 12533
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 12532 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 12473
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 12472 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 12413
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 12412 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 12353
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 12352 cccctcttcgggaagctcttctttgc 12327
>ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3746
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 2873 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 2932
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 2933 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 2992
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 2993 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 3052
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 3053 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 3112
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 3113 tgaatcatggggacctctgttcgggaagctcttctttgc 3151
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 8488996 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 8489055
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 8489056 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 8489115
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 8489116 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 8489175
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 8489176 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 8489235
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 8489236 tgaatcatggggacctctgttcgggaagctcttctttgc 8489274
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 1469683 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 1469624
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 1469623 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 1469564
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 1469563 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 1469504
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 1469503 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 1469444
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 1469443 cccctcttcgggaagctcttctttgc 1469418
>gb|CH401223.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000060 genomic
scaffold, whole genome shotgun sequence
Length = 1552265
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 1442411 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 1442352
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 1442351 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 1442292
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 1442291 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 1442232
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 1442231 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 1442172
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 1442171 cccctcttcgggaagctcttctttgc 1442146
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 2393296 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 2393355
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 2393356 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 2393415
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 2393416 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 2393475
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 2393476 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 2393535
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 2393536 tgaatcatggggacctctgttcgggaagctcttctttgc 2393574
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 12875888 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 12875829
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 12875828 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 12875769
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 12875768 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 12875709
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 12875708 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 12875649
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 12875648 cccctcttcgggaagctcttctttgc 12875623
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 8446921 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 8446980
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 8446981 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 8447040
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 8447041 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 8447100
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 8447101 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 8447160
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 8447161 tgaatcatggggacctctgttcgggaagctcttctttgc 8447199
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 180 bits (91), Expect = 3e-043
Identities = 220/266 (82%)
Strand = Plus / Minus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 13689020 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 13688961
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || ||||||||||||
Sbjct: 13688960 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaagagttctcagag 13688901
Query: 141 ctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaac 200
|| || |||||||||||||| ||| | ||||||||||| || || || ||| || |||||
Sbjct: 13688900 ctatatacattcaaatggactaccttgctgatacctccaaccactctactcttattgaac 13688841
Query: 201 ttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggc 260
|||||||| || || ||||| || ||||| |||| |||| ||||||||||||||
Sbjct: 13688840 ttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatgggga 13688781
Query: 261 cccctgttcgggaagctcttctttgc 286
||||| ||||||||||||||||||||
Sbjct: 13688780 cccctcttcgggaagctcttctttgc 13688755
Score = 180 bits (91), Expect = 3e-043
Identities = 229/279 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 8532924 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 8532983
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 8532984 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 8533043
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 8533044 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 8533103
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||| || ||||||||||||| || |||||||| || ||||| |||| | |||||
Sbjct: 8533104 gctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggata 8533163
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || |||||||||||||||||||||||
Sbjct: 8533164 tgaatcatggggacctctgttcgggaagctcttctttgc 8533202
>dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H07, full
insert sequence
Length = 1180
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 126 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 185
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 186 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 245
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 246 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 305
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 306 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 365
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 366 tgaatcatgggggccgctctttgggaagctgttctttgc 404
>dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full
insert sequence
Length = 4029
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 2978 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 3037
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 3038 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 3097
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 3098 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 3157
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 3158 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 3217
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 3218 tgaatcatgggggccgctctttgggaagctgttctttgc 3256
>dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029A22, full
insert sequence
Length = 2325
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 1603 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 1662
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 1663 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 1722
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 1723 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 1782
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 1783 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 1842
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 1843 tgaatcatgggggccgctctttgggaagctgttctttgc 1881
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
sequence
Length = 171376
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Minus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 137149 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 137090
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 137089 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 137030
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 137029 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 136970
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 136969 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 136910
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 136909 tgaatcatgggggccgctctttgggaagctgttctttgc 136871
>gb|AACV01008229.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008229, whole
genome shotgun sequence
Length = 36790
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 7827 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 7886
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 7887 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 7946
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 7947 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 8006
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 8007 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 8066
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 8067 tgaatcatgggggccgctctttgggaagctgttctttgc 8105
>ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3905
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 2808 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 2867
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 2868 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 2927
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 2928 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 2987
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 2988 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 3047
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 3048 tgaatcatgggggccgctctttgggaagctgttctttgc 3086
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 180034 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 180093
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 180094 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 180153
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 180154 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 180213
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 180214 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 180273
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 180274 tgaatcatgggggccgctctttgggaagctgttctttgc 180312
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 8598951 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 8599010
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 8599011 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 8599070
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 8599071 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 8599130
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 8599131 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 8599190
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 8599191 tgaatcatgggggccgctctttgggaagctgttctttgc 8599229
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 35865114 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 35865173
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 35865174 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 35865233
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 35865234 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 35865293
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 35865294 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 35865353
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 35865354 tgaatcatgggggccgctctttgggaagctgttctttgc 35865392
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 34968403 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 34968462
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 34968463 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 34968522
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 34968523 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 34968582
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 34968583 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 34968642
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 34968643 tgaatcatgggggccgctctttgggaagctgttctttgc 34968681
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 172 bits (87), Expect = 6e-041
Identities = 228/279 (81%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||
Sbjct: 34878331 gcagttttgggtcattggaggtgtctcttcacatctctttgctgtgttccaaggacttct 34878390
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|||| ||||||||| | || || ||||||||||||||||| ||||| ||||| || ||
Sbjct: 34878391 caaggtcatagctggtatcgatacaagcttcactgtgacatcaaagggtggagatgatga 34878450
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| || || ||||||||||| ||| | | ||||| || || || |
Sbjct: 34878451 agagttctcagagctgtataccttcaaatggacaaccttgttaataccccctaccacttt 34878510
Query: 188 gctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggata 247
||||||| |||||||||| || || || |||||| || || || |||| |||||||
Sbjct: 34878511 gctcctattgaacttcatcggggtagtggctggcgtttccaacgcaatcaataacggata 34878570
Query: 248 tgaatcatggggccccctgttcgggaagctcttctttgc 286
|||||||||||| || || || |||||||| ||||||||
Sbjct: 34878571 tgaatcatgggggccgctctttgggaagctgttctttgc 34878609
>gb|CA998979.1|CA998979 S345S_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 157 bits (79), Expect = 4e-036
Identities = 208/254 (81%)
Strand = Plus / Plus
Query: 33 tcttcacatctctttgctgtgttccagggactactcaagnnnatagctggtgtagacacg 92
|||||||||||||||||||||||||| ||||| |||||| ||||||||| | || ||
Sbjct: 5 tcttcacatctctttgctgtgttccaaggacttctcaaggtcatagctggtatcgataca 64
Query: 93 agcttcactgtgacatccaagggcggagacgacgaggagttctcagagctctacacattc 152
||||||||||||||||| ||||| ||||| || || |||||||||||||| || || |||
Sbjct: 65 agcttcactgtgacatcaaagggtggagatgatgaagagttctcagagctgtataccttc 124
Query: 153 aaatggacgacccttctgatacctccgacaaccctgctcctactgaacttcattggagtg 212
|||||||| ||| | | ||||| || || || |||||||| |||||||||| || ||
Sbjct: 125 aaatggacaaccttgttaataccccctaccactttgctcctattgaacttcatcggggta 184
Query: 213 gtagctggcattnnnaatgcgatcannnacggatatgaatcatggggccccctgttcggg 272
|| |||||| || || || |||| ||||||||||||||||||| || || || |||
Sbjct: 185 gtggctggcgtttccaacgcaatcaataacggatatgaatcatgggggccgctctttggg 244
Query: 273 aagctcttctttgc 286
||||| ||||||||
Sbjct: 245 aagctgttctttgc 258
>gb|CF311260.1|CF311260 ABF--06-G16.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-G16, mRNA sequence
Length = 414
Score = 147 bits (74), Expect = 4e-033
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 75 atagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttc 134
||||||||| |||| ||||| ||||||| |||||| || || || ||||| || ||||||
Sbjct: 31 atagctggtatagatacgagtttcactgggacatcaaaaggtggggacgatgaagagttc 90
Query: 135 tcagagctctacacattcaaatggacgacccttctgatacctccgacaaccctgctccta 194
|||||||| || |||||||||||||| ||| | ||||||||||| || || || ||| ||
Sbjct: 91 tcagagctatatacattcaaatggactaccttgctgatacctccaaccactctactctta 150
Query: 195 ctgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatca 254
||||||||||||| || || ||||| || ||||| |||| |||| |||||||||
Sbjct: 151 ttgaacttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatca 210
Query: 255 tggggccccctgttcgggaagctcttctttgc 286
||||| ||||| ||||||||||||||||||||
Sbjct: 211 tggggacccctcttcgggaagctcttctttgc 242
>gb|CF311164.1|CF311164 ABF--06-E14.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-E14, mRNA sequence
Length = 363
Score = 139 bits (70), Expect = 9e-031
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 75 atagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttc 134
||||||||| |||| ||||| ||||||| |||||| || || || ||||| || ||||||
Sbjct: 31 atagctggtatagatacgagtttcactgggacatcaaaaggtggggacgatgaagagttc 90
Query: 135 tcagagctctacacattcaaatggacgacccttctgatacctccgacaaccctgctccta 194
|||||||| || |||||||||||||| ||| | ||||||||||| || || || ||| ||
Sbjct: 91 tcagagctatatacattcaaatggactaccttgctgatacctccaaccactctactctta 150
Query: 195 ctgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatca 254
|||||||||||| || || ||||| || ||||| |||| |||| |||||||||
Sbjct: 151 ttgaacttcattgcggttgttgctggtgtttcaaatgcaatcaataacgggtatgaatca 210
Query: 255 tggggccccctgttcgggaagctcttctttgc 286
||||| ||||| ||||||||||||||||||||
Sbjct: 211 tggggacccctcttcgggaagctcttctttgc 242
>gb|D24964.1|D24964 RICR2854A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2854_1A, mRNA sequence
Length = 446
Score = 125 bits (63), Expect = 1e-026
Identities = 165/201 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 194 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 253
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 254 gaaagtccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 313
Query: 128 ggagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccct 187
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || ||
Sbjct: 314 agagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacact 373
Query: 188 gctcctactgaacttcattgg 208
||| || |||||||||||||
Sbjct: 374 gctgctgttgaacttcattgg 394
>gb|AU068488.1|AU068488 AU068488 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30355_4A, mRNA sequence
Length = 270
Score = 121 bits (61), Expect = 2e-025
Identities = 142/171 (83%)
Strand = Plus / Plus
Query: 116 cggagacgacgaggagttctcagagctctacacattcaaatggacgacccttctgatacc 175
|||||| || || |||||||||||||| ||||| ||||||||||| ||| | |||||||
Sbjct: 1 cggagatgatgaagagttctcagagctatacacgttcaaatggaccaccttgttgatacc 60
Query: 176 tccgacaaccctgctcctactgaacttcattggagtggtagctggcattnnnaatgcgat 235
||| || || ||||| || ||||||||||||| || |||||||| || ||||| ||
Sbjct: 61 tccaactacactgctgctgttgaacttcattggggttgtagctggagtttctaatgctat 120
Query: 236 cannnacggatatgaatcatggggccccctgttcgggaagctcttctttgc 286
|| | ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 121 caacaatggatatgaatcatggggacctctgttcgggaagctcttctttgc 171
>gb|CF326709.1|CF326709 JMT1--06-N01.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-N01, mRNA sequence
Length = 505
Score = 121 bits (61), Expect = 2e-025
Identities = 197/244 (80%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 44 ctttgctgtgttccagggactactcaagnnnatagctggtgtagacacgagcttcactgt 103
||||||||||||||| ||||| |||||| ||||||||| | || || |||||||||||
Sbjct: 16 ctttgctgtgttccaaggacttctcaaggtcatagctggtatcgatacaagcttcactgt 75
Query: 104 gacatccaagggcggagacgacgaggagttctcagagctctacacattcaaatggacgac 163
|||||| ||||| ||||| || || |||||||||||||| || || ||||||||||| ||
Sbjct: 76 gacatcaaagggtggagatgatgaagagttctcagagctgtataccttcaaatggacaac 135
Query: 164 ccttctgatacctccgac-aaccctgctcctactgaacttcattggagtggtagctggca 222
| | | ||||| || || || |||||||| |||||||||| || || || ||||||
Sbjct: 136 cttgttaataccccctactcactttgctcctattgaacttcatcggggtagtggctggcg 195
Query: 223 ttnnnaatgcgatcannnacggatatgaatcatggggccccctgttcgggaagctcttct 282
|| || || |||| ||||||||||||||||||| || || || |||||||| ||||
Sbjct: 196 tttccaacgcaatcaataacggatatgaatcatgggggccgctctttgggaagctgttct 255
Query: 283 ttgc 286
||||
Sbjct: 256 ttgc 259
>gb|CF323718.1|CF323718 HDN--04-J12.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-J12, mRNA sequence
Length = 531
Score = 119 bits (60), Expect = 8e-025
Identities = 132/158 (83%)
Strand = Plus / Plus
Query: 129 gagttctcagagctctacacattcaaatggacgacccttctgatacctccgacaaccctg 188
|||||||||||||| ||||| ||||||||||| ||| | |||||||||| || || |||
Sbjct: 49 gagttctcagagctatacacgttcaaatggaccaccttgttgatacctccaactacactg 108
Query: 189 ctcctactgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggatat 248
|| || ||||||||||||| || |||||||| || ||||| |||| | ||||||
Sbjct: 109 ctgctgttgaacttcattggggttgtagctggagtttctaatgctatcaacaatggatat 168
Query: 249 gaatcatggggccccctgttcgggaagctcttctttgc 286
||||||||||| || |||||||||||||||||||||||
Sbjct: 169 gaatcatggggacctctgttcgggaagctcttctttgc 206
>gb|CB671503.1|CB671503 OSJNEe05B24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05B24 5', mRNA sequence
Length = 783
Score = 101 bits (51), Expect = 2e-019
Identities = 117/140 (83%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 632 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 691
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttctcagag 140
||| |||| ||||| |||||||||||||| || || || ||||| || |||||||||||
Sbjct: 692 ggtatagatacgagtttcactgtgacatcaaaaggtggggacgatgaaaagttctcagag 751
Query: 141 ctctacacattcaaatggac 160
|| || ||||||||||||||
Sbjct: 752 ctatatacattcaaatggac 771
>gb|D48053.1|D48053 RICS13983A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 467
Score = 97.6 bits (49), Expect = 3e-018
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 148 cattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaacttcattg 207
||||||||||||| ||| | ||||||||||| || || || ||| || ||||||||||||
Sbjct: 1 cattcaaatggactaccttgctgatacctccaaccactctactcttattgaacttcattg 60
Query: 208 gagtggtagctggcattnnnaatgcgatcannnacggatatgaatcatggggccccctgt 267
| || || ||||| || ||||| |||| |||| |||||||||||||| ||||| |
Sbjct: 61 gggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcatggggacccctct 120
Query: 268 tcgggaagctcttctttgc 286
|||||||||||||||||||
Sbjct: 121 tcgggaagctcttctttgc 139
>gb|C72423.1|C72423 C72423 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1590_1A, mRNA sequence
Length = 440
Score = 95.6 bits (48), Expect = 1e-017
Identities = 118/141 (83%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 246 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 305
Query: 81 ggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttct-caga 139
||| |||| ||||| |||||||| |||||||| || || ||||| || ||||||| ||||
Sbjct: 306 ggtatagatacgagtttcactgttacatccaaaggtggggacgatgaagagttctccaga 365
Query: 140 gctctacacattcaaatggac 160
||| || ||||||||||||||
Sbjct: 366 gctatatacattcaaatggac 386
>gb|AU032362.1|AU032362 AU032362 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3939_1A, mRNA sequence
Length = 460
Score = 91.7 bits (46), Expect = 2e-016
Identities = 150/185 (81%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 21 attggaggcgtgtcttcacatctctttgctgtgttccagggactactcaagnnnatagct 80
|||||||| || ||||| || ||||||||| ||||||||||||| | ||| ||||||
Sbjct: 193 attggaggggtctcttcgcacctctttgctttgttccagggacttttgaaggtcatagct 252
Query: 81 ggtgtagacacgagcttcact-gtgacatccaagggcggagacgacgaggagttctcaga 139
||| |||| ||||| |||||| |||||| | || || || ||||| || |||||||||||
Sbjct: 253 ggtatagatacgagtttcactngtgacagcaaaaggtggggacgatgaagagttctcaga 312
Query: 140 gctctacacattcaaatggacgacccttctgatacctccgacaaccctgctcctactgaa 199
|| || |||||||||||||| ||| | |||| |||||| || || || ||| || ||||
Sbjct: 313 gcnatatacattcaaatggactaccttgctganacctccaaccactctactcttattgaa 372
Query: 200 cttca 204
|||||
Sbjct: 373 cttca 377
>gb|AU065353.1|AU065353 AU065353 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3439_1A, mRNA sequence
Length = 400
Score = 91.7 bits (46), Expect = 2e-016
Identities = 116/140 (82%)
Strand = Plus / Plus
Query: 8 gcagttttggnnnattggaggcgtgtcttcacatctctttgctgtgttccagggactact 67
|||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| ||
Sbjct: 194 gcagttttgggtcattggaggtgtttcttcacatctcttcgctgtattccaaggacttct 253
Query: 68 caagnnnatagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacga 127
|| | | |||||||| || || ||||||||||||||||| |||| |||||| || ||
Sbjct: 254 gaaanaccttgctggtgttgataccagcttcactgtgacatcaaaggccggagatgatga 313
Query: 128 ggagttctcagagctctaca 147
|||||||||||||| ||||
Sbjct: 314 agagttctcagagctataca 333
>gb|D48612.2|D48612 RICS14935A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 270
Score = 73.8 bits (37), Expect = 4e-011
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 196 tgaacttcattggagtggtagctggcattnnnaatgcgatcannnacggatatgaatcat 255
||||||||||||| || || ||||| || ||||| |||| |||| ||||||||||
Sbjct: 52 tgaacttcattggggttgttgctggtgtttcgaatgcaatcaataacgggtatgaatcat 111
Query: 256 ggggccccctgttcgggaagctcttctttgc 286
|||| ||||| ||||||||||||||||||||
Sbjct: 112 ggggacccctcttcgggaagctcttctttgc 142
>gb|CB675258.1|CB675258 OSJNEe10O07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10O07 3', mRNA sequence
Length = 786
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 255 tggggccccctgttcgggaagctcttctt 283
|||||||| ||||||||||||||||||||
Sbjct: 419 tggggcccgctgttcgggaagctcttctt 391
>gb|CV728643.1|CV728643 FLO--01-B11.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-B11,
mRNA sequence
Length = 319
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 255 tggggccccctgttcgggaagctcttctt 283
|||||||| ||||||||||||||||||||
Sbjct: 105 tggggcccgctgttcgggaagctcttctt 133
>dbj|AK072259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009D02, full
insert sequence
Length = 3426
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 255 tggggccccctgttcgggaagctcttctt 283
|||||||| ||||||||||||||||||||
Sbjct: 3004 tggggcccgctgttcgggaagctcttctt 3032
>dbj|AK120265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D23, full
insert sequence
Length = 612
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 255 tggggccccctgttcgggaagctcttctt 283
|||||||| ||||||||||||||||||||
Sbjct: 230 tggggcccgctgttcgggaagctcttctt 258
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259,959
Number of Sequences: 438736
Number of extensions: 259959
Number of successful extensions: 5994
Number of sequences better than 0.5: 71
Number of HSP's better than 0.5 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5667
Number of HSP's gapped (non-prelim): 298
length of query: 286
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 266
effective length of database: 2,791,645,196
effective search space: 742577622136
effective search space used: 742577622136
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)