BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH22b04.yg.2.1
(457 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100536.1| Oryza sativa (japonica cultivar-group) cDNA... 494 e-137
dbj|AK103656.1| Oryza sativa (japonica cultivar-group) cDNA... 416 e-114
ref|XM_483096.1| Oryza sativa (japonica cultivar-group), mRNA 416 e-114
gb|CB640744.1|CB640744 OSJNEa16D01.f OSJNEa Oryza sativa (j... 387 e-105
dbj|AP005759.3| Oryza sativa (japonica cultivar-group) geno... 276 1e-071
gb|AACV01020253.1| Oryza sativa (japonica cultivar-group) c... 276 1e-071
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 276 1e-071
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 276 1e-071
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 276 1e-071
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 276 1e-071
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 276 1e-071
dbj|AP004762.3| Oryza sativa (japonica cultivar-group) geno... 260 6e-067
dbj|AP004620.3| Oryza sativa (japonica cultivar-group) geno... 260 6e-067
gb|AACV01018772.1| Oryza sativa (japonica cultivar-group) c... 260 6e-067
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 260 6e-067
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 260 6e-067
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 260 6e-067
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 260 6e-067
dbj|AK065888.1| Oryza sativa (japonica cultivar-group) cDNA... 170 4e-040
ref|XM_467557.1| Oryza sativa (japonica cultivar-group), mRNA 170 4e-040
dbj|AK100261.1| Oryza sativa (japonica cultivar-group) cDNA... 153 1e-034
gb|CF323549.1|CF323549 HDN--04-C08.g1 OsHDAC1-overexpressin... 147 6e-033
dbj|AK070835.1| Oryza sativa (japonica cultivar-group) cDNA... 127 6e-027
ref|XM_450350.1| Oryza sativa (japonica cultivar-group), mRNA 127 6e-027
gb|CF310584.1|CF310584 ABF--05-F03.b1 ABF3-overexpressing t... 119 1e-024
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 109 1e-021
dbj|AP005761.2| Oryza sativa (japonica cultivar-group) geno... 109 1e-021
gb|AACV01013626.1| Oryza sativa (japonica cultivar-group) c... 109 1e-021
dbj|AP006860.2| Oryza sativa (japonica cultivar-group) geno... 109 1e-021
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 109 1e-021
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 109 1e-021
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 109 1e-021
gb|AACV01005319.1| Oryza sativa (japonica cultivar-group) c... 105 2e-020
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 105 2e-020
dbj|AP004179.3| Oryza sativa (japonica cultivar-group) geno... 105 2e-020
dbj|AP005113.3| Oryza sativa (japonica cultivar-group) geno... 105 2e-020
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 105 2e-020
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 105 2e-020
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 105 2e-020
gb|D24464.1|D24464 RICR1985A Rice root Oryza sativa (japoni... 96 2e-017
dbj|AP005588.1| Oryza sativa (japonica cultivar-group) chro... 90 1e-015
dbj|AP005736.1| Oryza sativa (japonica cultivar-group) chro... 90 1e-015
dbj|AP005589.2| Oryza sativa (japonica cultivar-group) geno... 90 1e-015
dbj|AP006441.3| Oryza sativa (japonica cultivar-group) geno... 90 1e-015
gb|AACV01019273.1| Oryza sativa (japonica cultivar-group) c... 90 1e-015
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 90 1e-015
gb|CH401236.1| Oryza sativa (japonica cultivar-group) chrom... 90 1e-015
dbj|AK101944.1| Oryza sativa (japonica cultivar-group) cDNA... 80 1e-012
ref|XM_467102.1| Oryza sativa (japonica cultivar-group), mRNA 72 3e-010
gb|CF324401.1|CF324401 HDN--06-G24.g1 OsHDAC1-overexpressin... 66 2e-008
gb|CO436004.1|CO436004 OsMR926 5MT resistant rice mutant cD... 64 7e-008
dbj|AK107126.1| Oryza sativa (japonica cultivar-group) cDNA... 64 7e-008
gb|AQ686421.1|AQ686421 nbxb0072E14r CUGI Rice BAC Library O... 62 3e-007
emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Parti... 62 3e-007
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 62 3e-007
gb|AACV01005055.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
gb|AACV01024886.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
dbj|AP004676.3| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA... 58 4e-006
gb|AACV01009691.1| Oryza sativa (japonica cultivar-group) c... 58 4e-006
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 58 4e-006
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 58 4e-006
emb|AL731641.4| Oryza sativa (japonica cultivar-group) chro... 58 4e-006
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 58 4e-006
gb|AQ861232.1|AQ861232 nbeb0016P15r CUGI Rice BAC Library (... 54 7e-005
gb|AACV01010227.1| Oryza sativa (japonica cultivar-group) c... 54 7e-005
ref|XM_473399.1| Oryza sativa (japonica cultivar-group), p... 54 7e-005
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 54 7e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 54 7e-005
emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC... 54 7e-005
dbj|AK069983.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
ref|NM_188644.1| Oryza sativa (japonica cultivar-group), Oz... 48 0.004
gb|AQ325863.1|AQ325863 nbxb0021J08f CUGI Rice BAC Library O... 46 0.016
gb|CF322986.1|CF322986 HDN--02-J22.g1 OsHDAC1-overexpressin... 46 0.016
gb|AACV01000522.1| Oryza sativa (japonica cultivar-group) c... 44 0.064
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.064
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 44 0.064
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 44 0.064
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.064
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.064
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.064
>dbj|AK100536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N17, full
insert sequence
Length = 2366
Score = 494 bits (249), Expect = e-137
Identities = 402/453 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 1078 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 1137
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 1138 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 1197
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 1198 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 1257
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 1258 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 1317
Query: 245 agttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatat 304
||||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||
Sbjct: 1318 agttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatat 1377
Query: 305 accgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgg 364
|||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || |
Sbjct: 1378 accgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccg 1437
Query: 365 acttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctg 424
|||| || || |||||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 1438 actttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctg 1497
Query: 425 gcctagatgcaatgcagaggaacaatgcagcgt 457
| |||||||| |||||||||| ||||||||||
Sbjct: 1498 gtttagatgcactgcagaggaataatgcagcgt 1530
>dbj|AK103656.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135F07, full
insert sequence
Length = 2455
Score = 416 bits (210), Expect = e-114
Identities = 387/446 (86%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 1058 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 1117
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 1118 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 1177
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 1178 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 1237
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1238 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 1297
Query: 245 agttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatat 304
|||||||||| || ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 1298 agttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatat 1357
Query: 305 accgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgg 364
|||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| |
Sbjct: 1358 accgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctg 1417
Query: 365 acttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctg 424
| || ||||| || ||||| ||| | || |||| || || |||||||||| |||||||
Sbjct: 1418 attttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctg 1477
Query: 425 gcctagatgcaatgcagaggaacaat 450
| | |||||| ||||||||||||||
Sbjct: 1478 gaccagatgcgttgcagaggaacaat 1503
>ref|XM_483096.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2455
Score = 416 bits (210), Expect = e-114
Identities = 387/446 (86%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 1058 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 1117
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 1118 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 1177
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 1178 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 1237
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1238 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 1297
Query: 245 agttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatat 304
|||||||||| || ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 1298 agttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatat 1357
Query: 305 accgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgg 364
|||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| |
Sbjct: 1358 accgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctg 1417
Query: 365 acttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctg 424
| || ||||| || ||||| ||| | || |||| || || |||||||||| |||||||
Sbjct: 1418 attttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctg 1477
Query: 425 gcctagatgcaatgcagaggaacaat 450
| | |||||| ||||||||||||||
Sbjct: 1478 gaccagatgcgttgcagaggaacaat 1503
>gb|CB640744.1|CB640744 OSJNEa16D01.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa16D01 5', mRNA sequence
Length = 483
Score = 387 bits (195), Expect = e-105
Identities = 317/358 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 116 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 175
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 176 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 235
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 236 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 295
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 296 gggacctgcacactcttcgacaaaggcagcctgnaaagcatttctcagagcaagcagcaa 355
Query: 245 agttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatat 304
|||||||||| || ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 356 agttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatat 415
Query: 305 accgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|||||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||||||
Sbjct: 416 accgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtc 473
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0556A05
Length = 158189
Score = 276 bits (139), Expect = 1e-071
Identities = 217/243 (89%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 135763 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 135822
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 135823 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 135882
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 135883 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 135942
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 135943 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 136002
Query: 245 agt 247
|||
Sbjct: 136003 agt 136005
Score = 222 bits (112), Expect = 1e-055
Identities = 187/212 (88%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
|||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 136542 gttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatata 136601
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||
Sbjct: 136602 ccgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccga 136661
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
||| || || |||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 136662 ctttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctgg 136721
Query: 426 cctagatgcaatgcagaggaacaatgcagcgt 457
|||||||| |||||||||| ||||||||||
Sbjct: 136722 tttagatgcactgcagaggaataatgcagcgt 136753
>gb|AACV01020253.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020253, whole
genome shotgun sequence
Length = 20888
Score = 276 bits (139), Expect = 1e-071
Identities = 217/243 (89%)
Strand = Plus / Minus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 3840 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 3781
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 3780 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 3721
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 3720 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 3661
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 3660 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 3601
Query: 245 agt 247
|||
Sbjct: 3600 agt 3598
Score = 222 bits (112), Expect = 1e-055
Identities = 187/212 (88%)
Strand = Plus / Minus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
|||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 3061 gttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatata 3002
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||
Sbjct: 3001 ccgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccga 2942
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
||| || || |||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 2941 ctttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctgg 2882
Query: 426 cctagatgcaatgcagaggaacaatgcagcgt 457
|||||||| |||||||||| ||||||||||
Sbjct: 2881 tttagatgcactgcagaggaataatgcagcgt 2850
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 276 bits (139), Expect = 1e-071
Identities = 217/243 (89%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 3978842 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 3978901
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 3978902 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 3978961
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 3978962 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 3979021
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 3979022 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 3979081
Query: 245 agt 247
|||
Sbjct: 3979082 agt 3979084
Score = 222 bits (112), Expect = 1e-055
Identities = 187/212 (88%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
|||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 3979621 gttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatata 3979680
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||
Sbjct: 3979681 ccgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccga 3979740
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
||| || || |||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 3979741 ctttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctgg 3979800
Query: 426 cctagatgcaatgcagaggaacaatgcagcgt 457
|||||||| |||||||||| ||||||||||
Sbjct: 3979801 tttagatgcactgcagaggaataatgcagcgt 3979832
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463G11
Length = 154188
Score = 276 bits (139), Expect = 1e-071
Identities = 217/243 (89%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 1775 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 1834
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 1835 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 1894
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 1895 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 1954
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 1955 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 2014
Query: 245 agt 247
|||
Sbjct: 2015 agt 2017
Score = 222 bits (112), Expect = 1e-055
Identities = 187/212 (88%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
|||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 2554 gttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatata 2613
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||
Sbjct: 2614 ccgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccga 2673
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
||| || || |||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 2674 ctttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctgg 2733
Query: 426 cctagatgcaatgcagaggaacaatgcagcgt 457
|||||||| |||||||||| ||||||||||
Sbjct: 2734 tttagatgcactgcagaggaataatgcagcgt 2765
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 276 bits (139), Expect = 1e-071
Identities = 217/243 (89%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 7584436 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 7584495
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 7584496 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 7584555
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 7584556 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 7584615
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 7584616 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 7584675
Query: 245 agt 247
|||
Sbjct: 7584676 agt 7584678
Score = 222 bits (112), Expect = 1e-055
Identities = 187/212 (88%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
|||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 7585215 gttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatata 7585274
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||
Sbjct: 7585275 ccgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccga 7585334
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
||| || || |||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 7585335 ctttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctgg 7585394
Query: 426 cctagatgcaatgcagaggaacaatgcagcgt 457
|||||||| |||||||||| ||||||||||
Sbjct: 7585395 tttagatgcactgcagaggaataatgcagcgt 7585426
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 276 bits (139), Expect = 1e-071
Identities = 217/243 (89%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 17058247 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 17058306
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 17058307 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 17058366
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 17058367 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 17058426
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 17058427 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 17058486
Query: 245 agt 247
|||
Sbjct: 17058487 agt 17058489
Score = 222 bits (112), Expect = 1e-055
Identities = 187/212 (88%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
|||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 17059026 gttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatata 17059085
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||
Sbjct: 17059086 ccgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccga 17059145
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
||| || || |||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 17059146 ctttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctgg 17059205
Query: 426 cctagatgcaatgcagaggaacaatgcagcgt 457
|||||||| |||||||||| ||||||||||
Sbjct: 17059206 tttagatgcactgcagaggaataatgcagcgt 17059237
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 3787431 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 3787372
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 3787371 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 3787319
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 3788638 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 3788579
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 3788578 ctgataagttctcatgcctagtaatggagttttgccctggagg 3788536
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 276 bits (139), Expect = 1e-071
Identities = 217/243 (89%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 18287039 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 18287098
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 18287099 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 18287158
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
| ||||||||||| || ||||| || |||||||| |||| |||||||||||||||||||
Sbjct: 18287159 tatatactcacttcgaaacagataaattttcatgtctggtgatggaattctgccctggag 18287218
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 18287219 gggacctccacactcttcgacaaaggcagcctggaaaacatttttcagagcaagcagcaa 18287278
Query: 245 agt 247
|||
Sbjct: 18287279 agt 18287281
Score = 222 bits (112), Expect = 1e-055
Identities = 187/212 (88%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
|||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 18287818 gttctatgtagcagaggttctcctagcgttggagtacctgcatatgcttggtatcatata 18287877
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||
Sbjct: 18287878 ccgtgatctgaagccagaaaatgtcctagttcgggaggacggccacatcatgctttccga 18287937
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
||| || || |||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 18287938 ctttgacctctctcttcgctgttcagtgagcccaactgtgatcaagtctgcaaatcctgg 18287997
Query: 426 cctagatgcaatgcagaggaacaatgcagcgt 457
|||||||| |||||||||| ||||||||||
Sbjct: 18287998 tttagatgcactgcagaggaataatgcagcgt 18288029
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 4329922 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 4329863
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 4329862 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 4329810
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 4331129 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 4331070
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 4331069 ctgataagttctcatgcctagtaatggagttttgccctggagg 4331027
>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0686H11
Length = 135273
Score = 260 bits (131), Expect = 6e-067
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 8705 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 8764
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 8765 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 8824
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 8825 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 8884
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 8885 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 8944
Query: 245 agt 247
|||
Sbjct: 8945 agt 8947
Score = 161 bits (81), Expect = 4e-037
Identities = 174/205 (84%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 9309 gttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatata 9368
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct: 9369 ccgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctga 9428
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
|| ||||| || ||||| ||| | || |||| || || |||||||||| ||||||||
Sbjct: 9429 ttttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctgg 9488
Query: 426 cctagatgcaatgcagaggaacaat 450
| |||||| ||||||||||||||
Sbjct: 9489 accagatgcgttgcagaggaacaat 9513
>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0605H02
Length = 175547
Score = 260 bits (131), Expect = 6e-067
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 134740 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 134799
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 134800 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 134859
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 134860 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 134919
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 134920 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 134979
Query: 245 agt 247
|||
Sbjct: 134980 agt 134982
Score = 161 bits (81), Expect = 4e-037
Identities = 174/205 (84%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 135344 gttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatata 135403
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct: 135404 ccgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctga 135463
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
|| ||||| || ||||| ||| | || |||| || || |||||||||| ||||||||
Sbjct: 135464 ttttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctgg 135523
Query: 426 cctagatgcaatgcagaggaacaat 450
| |||||| ||||||||||||||
Sbjct: 135524 accagatgcgttgcagaggaacaat 135548
>gb|AACV01018772.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018772, whole
genome shotgun sequence
Length = 23644
Score = 260 bits (131), Expect = 6e-067
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 22529 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 22588
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 22589 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 22648
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 22649 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 22708
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 22709 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 22768
Query: 245 agt 247
|||
Sbjct: 22769 agt 22771
Score = 161 bits (81), Expect = 4e-037
Identities = 174/205 (84%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 23133 gttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatata 23192
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct: 23193 ccgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctga 23252
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
|| ||||| || ||||| ||| | || |||| || || |||||||||| ||||||||
Sbjct: 23253 ttttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctgg 23312
Query: 426 cctagatgcaatgcagaggaacaat 450
| |||||| ||||||||||||||
Sbjct: 23313 accagatgcgttgcagaggaacaat 23337
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 260 bits (131), Expect = 6e-067
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 24030314 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 24030373
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 24030374 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 24030433
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 24030434 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 24030493
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 24030494 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 24030553
Query: 245 agt 247
|||
Sbjct: 24030554 agt 24030556
Score = 161 bits (81), Expect = 4e-037
Identities = 174/205 (84%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 24030918 gttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatata 24030977
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct: 24030978 ccgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctga 24031037
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
|| ||||| || ||||| ||| | || |||| || || |||||||||| ||||||||
Sbjct: 24031038 ttttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctgg 24031097
Query: 426 cctagatgcaatgcagaggaacaat 450
| |||||| ||||||||||||||
Sbjct: 24031098 accagatgcgttgcagaggaacaat 24031122
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 260 bits (131), Expect = 6e-067
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 15499453 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 15499512
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 15499513 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 15499572
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 15499573 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 15499632
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 15499633 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 15499692
Query: 245 agt 247
|||
Sbjct: 15499693 agt 15499695
Score = 161 bits (81), Expect = 4e-037
Identities = 174/205 (84%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 15500057 gttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatata 15500116
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct: 15500117 ccgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctga 15500176
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
|| ||||| || ||||| ||| | || |||| || || |||||||||| ||||||||
Sbjct: 15500177 ttttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctgg 15500236
Query: 426 cctagatgcaatgcagaggaacaat 450
| |||||| ||||||||||||||
Sbjct: 15500237 accagatgcgttgcagaggaacaat 15500261
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 260 bits (131), Expect = 6e-067
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 23101459 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 23101518
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 23101519 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 23101578
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 23101579 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 23101638
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 23101639 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 23101698
Query: 245 agt 247
|||
Sbjct: 23101699 agt 23101701
Score = 161 bits (81), Expect = 4e-037
Identities = 174/205 (84%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 23102063 gttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatata 23102122
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct: 23102123 ccgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctga 23102182
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
|| ||||| || ||||| ||| | || |||| || || |||||||||| ||||||||
Sbjct: 23102183 ttttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctgg 23102242
Query: 426 cctagatgcaatgcagaggaacaat 450
| |||||| ||||||||||||||
Sbjct: 23102243 accagatgcgttgcagaggaacaat 23102267
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 260 bits (131), Expect = 6e-067
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 24268401 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 24268460
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct: 24268461 ttcgagcgcaaacagagcgggagatcctgcaatctctggatcatccatttctgccaacac 24268520
Query: 125 tgtatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggag 184
||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct: 24268521 tgtatacccacttcgagacagataagttctcatgcttggttatggagttctgcccaggag 24268580
Query: 185 gggatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaa 244
|||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 24268581 gggacctgcacactcttcgacaaaggcagcctggaaagcatttctcagagcaagcagcaa 24268640
Query: 245 agt 247
|||
Sbjct: 24268641 agt 24268643
Score = 161 bits (81), Expect = 4e-037
Identities = 174/205 (84%)
Strand = Plus / Plus
Query: 246 gttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 24269005 gttctatgtggcagaggttcttcttgcattagaatacctgcatatgcttgggattatata 24269064
Query: 306 ccgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcgga 365
||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct: 24269065 ccgtgatctgaaaccagaaaatgtccttgtccgggaggatgggcacataatgctgtctga 24269124
Query: 366 cttcgatctatctcttcgctgttcagtgagcctaacggtgatcaagtccgcaaatcctgg 425
|| ||||| || ||||| ||| | || |||| || || |||||||||| ||||||||
Sbjct: 24269125 ttttgatctctcccttcgttgtgctgtaagccctactgttgtcaagtccgcgaatcctgg 24269184
Query: 426 cctagatgcaatgcagaggaacaat 450
| |||||| ||||||||||||||
Sbjct: 24269185 accagatgcgttgcagaggaacaat 24269209
>dbj|AK065888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J15, full
insert sequence
Length = 2181
Score = 170 bits (86), Expect = 4e-040
Identities = 284/350 (81%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 934 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 993
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 994 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 1053
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 1054 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 1113
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctatgtagct 258
||| | || |||||||| || ||||||||| |||||||||| | || |||||||||||
Sbjct: 1114 cttaggcagaggcagccgggcaaatattttccagagcaagctgtcaaattctatgtagca 1173
Query: 259 gaggtgctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaa 318
|| | ||| | ||||| || |||||||| ||||| || || |||||||||||||| ||
Sbjct: 1174 gaaatcctcttggcattagagtacctgcacatgctcggcatcatataccgtgatctcaag 1233
Query: 319 ccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggactt 368
||||| || |||||||||||||| ||||| ||||||||||| || |||||
Sbjct: 1234 ccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgactt 1283
>ref|XM_467557.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2182
Score = 170 bits (86), Expect = 4e-040
Identities = 284/350 (81%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 935 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 994
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 995 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 1054
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 1055 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 1114
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctatgtagct 258
||| | || |||||||| || ||||||||| |||||||||| | || |||||||||||
Sbjct: 1115 cttaggcagaggcagccgggcaaatattttccagagcaagctgtcaaattctatgtagca 1174
Query: 259 gaggtgctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaa 318
|| | ||| | ||||| || |||||||| ||||| || || |||||||||||||| ||
Sbjct: 1175 gaaatcctcttggcattagagtacctgcacatgctcggcatcatataccgtgatctcaag 1234
Query: 319 ccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggactt 368
||||| || |||||||||||||| ||||| ||||||||||| || |||||
Sbjct: 1235 ccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgactt 1284
>dbj|AK100261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063D14, full
insert sequence
Length = 2198
Score = 153 bits (77), Expect = 1e-034
Identities = 308/385 (80%)
Strand = Plus / Plus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 866 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 925
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 926 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 985
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 986 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 1045
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctat 252
|| |||||||| |||||||||| ||| || |||||| |||| ||||| | || ||||||
Sbjct: 1046 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagctgtcaaattctat 1105
Query: 253 gtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgtgat 312
|| || || | |||||||| |||| ||| |||| |||||||| || ||||| ||||||
Sbjct: 1106 gtggcagaaatactccttgctatggagtacttgcacatgcttggtatcatatatcgtgat 1165
Query: 313 cttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgat 372
|| || || || |||||||| || || || ||||| ||||||||||| || ||||| ||
Sbjct: 1166 ctgaagccggaaaatgtccttgtccgtgaggatggacacatcatgctatctgactttgac 1225
Query: 373 ctatctcttcgctgttcagtgagcc 397
|| || || |||||| |||||||||
Sbjct: 1226 ctctccctgcgctgtgcagtgagcc 1250
>gb|CF323549.1|CF323549 HDN--04-C08.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-C08, mRNA sequence
Length = 486
Score = 147 bits (74), Expect = 6e-033
Identities = 125/142 (88%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct: 343 ggagttactttgcaatgaaggtcatggataaggcatctttggcaagtcggaagaagcttc 402
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccc 124
||||| | ||||| |||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 403 ttcgatcgcagactgagcttgagatactgcagtcgcttgatcatccatttctaccaaccc 462
Query: 125 tgtatactcactttgagacaga 146
| ||||||||||| || |||||
Sbjct: 463 tatatactcacttcgaaacaga 484
>dbj|AK070835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075E03, full
insert sequence
Length = 2391
Score = 127 bits (64), Expect = 6e-027
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 1108 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 1167
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacactcttc 202
| || ||||| |||||| | || ||||| || ||||||||||| || || ||||| ||
Sbjct: 1168 ctgataagttctcatgcctagtaatggagttttgccctggaggagacctgcacaccctaa 1227
Query: 203 gccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctatgtagctgagg 262
| |||| ||| || || || | |||| | || ||||| || ||||| ||||| |||||||
Sbjct: 1228 ggcaaaagcaaccggggaagttttttccggaacaagctgccaagttttatgtggctgagg 1287
Query: 263 tgctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccag 322
|||| ||||| | |||||||||||||||||||| || ||||| || || ||||| ||||
Sbjct: 1288 tgcttcttgctctagaatacctgcatatgcttggcatcatatatcgggaccttaagccag 1347
Query: 323 agaatgtcctcgttcgggaagatggccacatcatgctgtc 362
| ||||| || || | |||||||||||||||||||||||
Sbjct: 1348 aaaatgttcttgtgagagaagatggccacatcatgctgtc 1387
>ref|XM_450350.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2392
Score = 127 bits (64), Expect = 6e-027
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 1109 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 1168
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacactcttc 202
| || ||||| |||||| | || ||||| || ||||||||||| || || ||||| ||
Sbjct: 1169 ctgataagttctcatgcctagtaatggagttttgccctggaggagacctgcacaccctaa 1228
Query: 203 gccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctatgtagctgagg 262
| |||| ||| || || || | |||| | || ||||| || ||||| ||||| |||||||
Sbjct: 1229 ggcaaaagcaaccggggaagttttttccggaacaagctgccaagttttatgtggctgagg 1288
Query: 263 tgctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccag 322
|||| ||||| | |||||||||||||||||||| || ||||| || || ||||| ||||
Sbjct: 1289 tgcttcttgctctagaatacctgcatatgcttggcatcatatatcgggaccttaagccag 1348
Query: 323 agaatgtcctcgttcgggaagatggccacatcatgctgtc 362
| ||||| || || | |||||||||||||||||||||||
Sbjct: 1349 aaaatgttcttgtgagagaagatggccacatcatgctgtc 1388
>gb|CF310584.1|CF310584 ABF--05-F03.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-F03, mRNA sequence
Length = 710
Score = 119 bits (60), Expect = 1e-024
Identities = 225/280 (80%)
Strand = Plus / Plus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 41 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 100
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacactcttc 202
| || ||||| |||||| | | ||||| || ||||||||||| || || ||||| ||
Sbjct: 101 ctgataagttctcatgcctagcaatggagttttgccctggaggagacctgcacaccctaa 160
Query: 203 gccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctatgtagctgagg 262
| |||| ||| || || || | |||| | || ||||| || ||||| ||||| |||||||
Sbjct: 161 ggcaaaagcaaccggggaagttttttccggaacaagctgccaagttttatgtggctgagg 220
Query: 263 tgctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccag 322
|||| ||||| | |||||||||||||||||||| || ||||| || || ||||| ||||
Sbjct: 221 tgcttcttgctctagaatacctgcatatgcttggcatcatatatcgggaccttaagccag 280
Query: 323 agaatgtcctcgttcgggaagatggccacatcatgctgtc 362
| ||||| || || | |||||||||||||||||||||||
Sbjct: 281 aaaatgttcttgtgagagaagatggccacatcatgctgtc 320
>ref|NT_107237.1| Oryza sativa (japonica cultivar-group)
Length = 2924261
Score = 109 bits (55), Expect = 1e-021
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 111900 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 111841
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 111840 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 111781
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 111780 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 111721
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
|| |||||||| |||||||||| ||| || |||||| |||| |||||
Sbjct: 111720 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagc 111674
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 265 ctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccagag 324
|||||||| |||| ||| |||| |||||||| || ||||| |||||||| || || ||
Sbjct: 111160 ctccttgctatggagtacttgcacatgcttggtatcatatatcgtgatctgaagccggaa 111101
Query: 325 aatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgatctatctcttcgc 384
|||||||| || || || ||||| ||||||||||| || ||||| || || || || |||
Sbjct: 111100 aatgtccttgtccgtgaggatggacacatcatgctatctgactttgacctctccctgcgc 111041
Query: 385 tgttcagtgagcc 397
||| |||||||||
Sbjct: 111040 tgtgcagtgagcc 111028
>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:B1066D09
Length = 183999
Score = 109 bits (55), Expect = 1e-021
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 71993 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 71934
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 71933 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 71874
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 71873 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 71814
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
|| |||||||| |||||||||| ||| || |||||| |||| |||||
Sbjct: 71813 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagc 71767
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 265 ctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccagag 324
|||||||| |||| ||| |||| |||||||| || ||||| |||||||| || || ||
Sbjct: 71253 ctccttgctatggagtacttgcacatgcttggtatcatatatcgtgatctgaagccggaa 71194
Query: 325 aatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgatctatctcttcgc 384
|||||||| || || || ||||| ||||||||||| || ||||| || || || || |||
Sbjct: 71193 aatgtccttgtccgtgaggatggacacatcatgctatctgactttgacctctccctgcgc 71134
Query: 385 tgttcagtgagcc 397
||| |||||||||
Sbjct: 71133 tgtgcagtgagcc 71121
>gb|AACV01013626.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013626, whole
genome shotgun sequence
Length = 58043
Score = 109 bits (55), Expect = 1e-021
Identities = 184/227 (81%)
Strand = Plus / Plus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 38940 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 38999
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 39000 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 39059
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 39060 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 39119
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
|| |||||||| |||||||||| ||| || |||||| |||| |||||
Sbjct: 39120 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagc 39166
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 265 ctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccagag 324
|||||||| |||| ||| |||| |||||||| || ||||| |||||||| || || ||
Sbjct: 39680 ctccttgctatggagtacttgcacatgcttggtatcatatatcgtgatctgaagccggaa 39739
Query: 325 aatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgatctatctcttcgc 384
|||||||| || || || ||||| ||||||||||| || ||||| || || || || |||
Sbjct: 39740 aatgtccttgtccgtgaggatggacacatcatgctatctgactttgacctctccctgcgc 39799
Query: 385 tgttcagtgagcc 397
||| |||||||||
Sbjct: 39800 tgtgcagtgagcc 39812
>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:B1026E06
Length = 162784
Score = 109 bits (55), Expect = 1e-021
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 111900 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 111841
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 111840 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 111781
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 111780 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 111721
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
|| |||||||| |||||||||| ||| || |||||| |||| |||||
Sbjct: 111720 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagc 111674
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 265 ctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccagag 324
|||||||| |||| ||| |||| |||||||| || ||||| |||||||| || || ||
Sbjct: 111160 ctccttgctatggagtacttgcacatgcttggtatcatatatcgtgatctgaagccggaa 111101
Query: 325 aatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgatctatctcttcgc 384
|||||||| || || || ||||| ||||||||||| || ||||| || || || || |||
Sbjct: 111100 aatgtccttgtccgtgaggatggacacatcatgctatctgactttgacctctccctgcgc 111041
Query: 385 tgttcagtgagcc 397
||| |||||||||
Sbjct: 111040 tgtgcagtgagcc 111028
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047 genomic
scaffold, whole genome shotgun sequence
Length = 2656042
Score = 109 bits (55), Expect = 1e-021
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 1820654 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 1820595
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 1820594 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 1820535
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 1820534 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 1820475
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
|| |||||||| |||||||||| ||| || |||||| |||| |||||
Sbjct: 1820474 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagc 1820428
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 265 ctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccagag 324
|||||||| |||| ||| |||| |||||||| || ||||| |||||||| || || ||
Sbjct: 1819914 ctccttgctatggagtacttgcacatgcttggtatcatatatcgtgatctgaagccggaa 1819855
Query: 325 aatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgatctatctcttcgc 384
|||||||| || || || ||||| ||||||||||| || ||||| || || || || |||
Sbjct: 1819854 aatgtccttgtccgtgaggatggacacatcatgctatctgactttgacctctccctgcgc 1819795
Query: 385 tgttcagtgagcc 397
||| |||||||||
Sbjct: 1819794 tgtgcagtgagcc 1819782
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 109 bits (55), Expect = 1e-021
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 10428306 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 10428247
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 10428246 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 10428187
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 10428186 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 10428127
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
|| |||||||| |||||||||| ||| || |||||| |||| |||||
Sbjct: 10428126 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagc 10428080
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 265 ctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccagag 324
|||||||| |||| ||| |||| |||||||| || ||||| |||||||| || || ||
Sbjct: 10427566 ctccttgctatggagtacttgcacatgcttggtatcatatatcgtgatctgaagccggaa 10427507
Query: 325 aatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgatctatctcttcgc 384
|||||||| || || || ||||| ||||||||||| || ||||| || || || || |||
Sbjct: 10427506 aatgtccttgtccgtgaggatggacacatcatgctatctgactttgacctctccctgcgc 10427447
Query: 385 tgttcagtgagcc 397
||| |||||||||
Sbjct: 10427446 tgtgcagtgagcc 10427434
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 109 bits (55), Expect = 1e-021
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||||||||| ||| | || | ||||| || ||||| ||||||||||
Sbjct: 10535286 tttgcgatgaaggttatggacaaggcatcacttgcaagccgcaagaaattgcttcgagcc 10535227
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
||||| ||| ||| ||| |||||| |||||| ||||| ||||| ||||| | |||||
Sbjct: 10535226 cagactgagaaggaaatcttgcagtgcctggatcatccttttcttccaacgttatatacc 10535167
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|| |||||||| || ||||| |||||| |||||||||| || |||||||| || || ||
Sbjct: 10535166 cattttgagactgataagttctcatgcctggttatggagttttgccctggtggagacctg 10535107
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
|| |||||||| |||||||||| ||| || |||||| |||| |||||
Sbjct: 10535106 catactcttcgacaaaggcagcgtggcaagtattttccagaacaagc 10535060
Score = 65.9 bits (33), Expect = 2e-008
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 265 ctccttgcattggaatacctgcatatgcttgggattatataccgtgatcttaaaccagag 324
|||||||| |||| ||| |||| |||||||| || ||||| |||||||| || || ||
Sbjct: 10534546 ctccttgctatggagtacttgcacatgcttggtatcatatatcgtgatctgaagccggaa 10534487
Query: 325 aatgtcctcgttcgggaagatggccacatcatgctgtcggacttcgatctatctcttcgc 384
|||||||| || || || ||||| ||||||||||| || ||||| || || || || |||
Sbjct: 10534486 aatgtccttgtccgtgaggatggacacatcatgctatctgactttgacctctccctgcgc 10534427
Query: 385 tgttcagtgagcc 397
||| |||||||||
Sbjct: 10534426 tgtgcagtgagcc 10534414
>gb|AACV01005319.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005319, whole
genome shotgun sequence
Length = 20741
Score = 105 bits (53), Expect = 2e-020
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 13794 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 13735
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 13734 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 13675
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 13674 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 13615
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 13614 cttaggcagaggcagccgggcaaatattttccagagcaagc 13574
Score = 83.8 bits (42), Expect = 7e-014
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
||||||||||| || | ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct: 13347 ttctatgtagcagaaatcctcttggcattagagtacctgcacatgctcggcatcatatac 13288
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggac 366
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 13287 cgtgatctcaagccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgac 13228
Query: 367 tt 368
||
Sbjct: 13227 tt 13226
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 105 bits (53), Expect = 2e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 5320683 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 5320742
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 5320743 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 5320802
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 5320803 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 5320862
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 5320863 cttaggcagaggcagccgggcaaatattttccagagcaagc 5320903
Score = 83.8 bits (42), Expect = 7e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
||||||||||| || | ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct: 5321130 ttctatgtagcagaaatcctcttggcattagagtacctgcacatgctcggcatcatatac 5321189
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggac 366
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 5321190 cgtgatctcaagccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgac 5321249
Query: 367 tt 368
||
Sbjct: 5321250 tt 5321251
Score = 61.9 bits (31), Expect = 3e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 109 ccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggttatg 168
||||| || ||||| ||||| || ||||||||||| |||| ||| ||||| |||| |||
Sbjct: 1578266 ccattccttccaactctgtacacacactttgagactgacaggttctcatgtctggtcatg 1578325
Query: 169 gaattctgccctggaggggatcttcacactcttcgccaaaggcagcc 215
|||||||| || || || ||||| |||||||| || ||| |||||||
Sbjct: 1578326 gaattctgtccgggtggtgatctgcacactctgcggcaacggcagcc 1578372
>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1124_G07
Length = 93240
Score = 105 bits (53), Expect = 2e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 28388 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 28447
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 28448 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 28507
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 28508 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 28567
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 28568 cttaggcagaggcagccgggcaaatattttccagagcaagc 28608
Score = 83.8 bits (42), Expect = 7e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
||||||||||| || | ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct: 28835 ttctatgtagcagaaatcctcttggcattagagtacctgcacatgctcggcatcatatac 28894
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggac 366
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 28895 cgtgatctcaagccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgac 28954
Query: 367 tt 368
||
Sbjct: 28955 tt 28956
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0685G12
Length = 149155
Score = 105 bits (53), Expect = 2e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 135281 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 135340
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 135341 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 135400
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 135401 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 135460
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 135461 cttaggcagaggcagccgggcaaatattttccagagcaagc 135501
Score = 83.8 bits (42), Expect = 7e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
||||||||||| || | ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct: 135728 ttctatgtagcagaaatcctcttggcattagagtacctgcacatgctcggcatcatatac 135787
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggac 366
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 135788 cgtgatctcaagccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgac 135847
Query: 367 tt 368
||
Sbjct: 135848 tt 135849
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 105 bits (53), Expect = 2e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 16650665 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 16650724
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 16650725 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 16650784
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 16650785 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 16650844
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 16650845 cttaggcagaggcagccgggcaaatattttccagagcaagc 16650885
Score = 83.8 bits (42), Expect = 7e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
||||||||||| || | ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct: 16651112 ttctatgtagcagaaatcctcttggcattagagtacctgcacatgctcggcatcatatac 16651171
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggac 366
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 16651172 cgtgatctcaagccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgac 16651231
Query: 367 tt 368
||
Sbjct: 16651232 tt 16651233
Score = 61.9 bits (31), Expect = 3e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 109 ccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggttatg 168
||||| || ||||| ||||| || ||||||||||| |||| ||| ||||| |||| |||
Sbjct: 12876072 ccattccttccaactctgtacacacactttgagactgacaggttctcatgtctggtcatg 12876131
Query: 169 gaattctgccctggaggggatcttcacactcttcgccaaaggcagcc 215
|||||||| || || || ||||| |||||||| || ||| |||||||
Sbjct: 12876132 gaattctgtccgggtggtgatctgcacactctgcggcaacggcagcc 12876178
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 105 bits (53), Expect = 2e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 30103729 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 30103788
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 30103789 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 30103848
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 30103849 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 30103908
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 30103909 cttaggcagaggcagccgggcaaatattttccagagcaagc 30103949
Score = 83.8 bits (42), Expect = 7e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
||||||||||| || | ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct: 30104176 ttctatgtagcagaaatcctcttggcattagagtacctgcacatgctcggcatcatatac 30104235
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggac 366
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 30104236 cgtgatctcaagccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgac 30104295
Query: 367 tt 368
||
Sbjct: 30104296 tt 30104297
Score = 61.9 bits (31), Expect = 3e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 109 ccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggttatg 168
||||| || ||||| ||||| || ||||||||||| |||| ||| ||||| |||| |||
Sbjct: 26329136 ccattccttccaactctgtacacacactttgagactgacaggttctcatgtctggtcatg 26329195
Query: 169 gaattctgccctggaggggatcttcacactcttcgccaaaggcagcc 215
|||||||| || || || ||||| |||||||| || ||| |||||||
Sbjct: 26329196 gaattctgtccgggtggtgatctgcacactctgcggcaacggcagcc 26329242
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 105 bits (53), Expect = 2e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 19 atgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagctcagacc 78
|||||| ||||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 30155684 atgaagattatggataaggcttcattagcaagccgcaagaagttgcttcgagctcaaact 30155743
Query: 79 gagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcacttt 138
||| || || ||||| | |||||| || || ||||| || || |||| ||||||||
Sbjct: 30155744 gagaaagaaattctgcaatgcctggatcacccctttcttcctacattgtacactcacttc 30155803
Query: 139 gagacagacaagttttcatgcttggttatggaattctgccctggaggggatcttcacact 198
||||| |||||||| |||||| |||| ||||| |||||||| ||||| || || || ||
Sbjct: 30155804 gagactgacaagttctcatgcctggtgatggagttctgcccaggaggagacctgcatacc 30155863
Query: 199 cttcgccaaaggcagcctggaaaatatttttcagagcaagc 239
||| | || |||||||| || ||||||||| ||||||||||
Sbjct: 30155864 cttaggcagaggcagccgggcaaatattttccagagcaagc 30155904
Score = 83.8 bits (42), Expect = 7e-014
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
||||||||||| || | ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct: 30156131 ttctatgtagcagaaatcctcttggcattagagtacctgcacatgctcggcatcatatac 30156190
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtcggac 366
|||||||| || ||||| || |||||||||||||| ||||| ||||||||||| || |||
Sbjct: 30156191 cgtgatctcaagccagaaaacgtcctcgttcgggaggatgggcacatcatgctatctgac 30156250
Query: 367 tt 368
||
Sbjct: 30156251 tt 30156252
Score = 61.9 bits (31), Expect = 3e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 109 ccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggttatg 168
||||| || ||||| ||||| || ||||||||||| |||| ||| ||||| |||| |||
Sbjct: 26413267 ccattccttccaactctgtacacacactttgagactgacaggttctcatgtctggtcatg 26413326
Query: 169 gaattctgccctggaggggatcttcacactcttcgccaaaggcagcc 215
|||||||| || || || ||||| |||||||| || ||| |||||||
Sbjct: 26413327 gaattctgtccgggtggtgatctgcacactctgcggcaacggcagcc 26413373
>gb|D24464.1|D24464 RICR1985A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1985_1A, mRNA sequence
Length = 407
Score = 95.6 bits (48), Expect = 2e-017
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 5 ggagttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgc 64
||||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||||||
Sbjct: 304 ggagttactttgcaatgaaggtcatggacaaggggtctctagcaagtcggaagaagctgc 363
Query: 65 ttcgagctcagaccgagcgggagatcctgcagtccctgga 104
||||||| || || ||||||||||||||||| || |||||
Sbjct: 364 ttcgagcgcaaacagagcgggagatcctgcaatctctgga 403
>dbj|AP005588.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0515B02, ***
SEQUENCING IN PROGRESS ***
Length = 147274
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 35527 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 35586
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 35587 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 35639
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Plus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 34320 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 34379
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 34380 ctgataagttctcatgcctagtaatggagttttgccctggagg 34422
>dbj|AP005736.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBb0044M12, *** SEQUENCING IN PROGRESS ***
Length = 131510
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 82604 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 82663
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 82664 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 82716
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Plus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 81397 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 81456
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 81457 ctgataagttctcatgcctagtaatggagttttgccctggagg 81499
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0523B07
Length = 170510
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 153681 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 153622
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 153621 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 153569
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 154888 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 154829
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 154828 ctgataagttctcatgcctagtaatggagttttgccctggagg 154786
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1279D09
Length = 134793
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 32740 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 32681
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 32680 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 32628
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 33947 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 33888
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 33887 ctgataagttctcatgcctagtaatggagttttgccctggagg 33845
>gb|AACV01019273.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019273, whole
genome shotgun sequence
Length = 17528
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 7627 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 7568
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 7567 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 7515
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 8834 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 8775
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 8774 ctgataagttctcatgcctagtaatggagttttgccctggagg 8732
>ref|NT_107079.1| Oryza sativa (japonica cultivar-group)
Length = 5472939
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 1526008 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 1525949
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 1525948 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 1525896
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 1527215 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 1527156
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 1527155 ctgataagttctcatgcctagtaatggagttttgccctggagg 1527113
>gb|CH401236.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000073
genomic scaffold, whole genome shotgun sequence
Length = 383705
Score = 89.7 bits (45), Expect = 1e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||||||||| ||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 193724 tatgtggctgaggtgcttcttgctctagaatacctgcatatgcttggcatcatatatcgg 193665
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgctgtc 362
|| ||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 193664 gaccttaagccagaaaatgttcttgtgagagaagatggccacatcatgctgtc 193612
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 194931 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 194872
Query: 143 cagacaagttttcatgcttggttatggaattctgccctggagg 185
| || ||||| |||||| | || ||||| || |||||||||||
Sbjct: 194871 ctgataagttctcatgcctagtaatggagttttgccctggagg 194829
>dbj|AK101944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074L09, full
insert sequence
Length = 2603
Score = 79.8 bits (40), Expect = 1e-012
Identities = 214/272 (78%)
Strand = Plus / Plus
Query: 109 ccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggttatg 168
||||| || ||||| ||||| || ||||||||||| |||| ||| ||||| |||| |||
Sbjct: 1405 ccattccttccaactctgtacacacactttgagactgacaggttctcatgtctggtcatg 1464
Query: 169 gaattctgccctggaggggatcttcacactcttcgccaaaggcagcctggaaaatatttt 228
|||||||| || || || ||||| |||||||| || ||| ||||||| |||| ||||
Sbjct: 1465 gaattctgtccgggtggtgatctgcacactctgcggcaacggcagccacgaaagcatttc 1524
Query: 229 tcagagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaatacctgcat 288
|| || | ||||||| ||| |||| |||||||||||||| || |||| ||||||||
Sbjct: 1525 tctgaatatgcagcaaggttttatgccgctgaggtgctcctagctctggagtacctgcac 1584
Query: 289 atgcttgggattatataccgtgatcttaaaccagagaatgtcctcgttcgggaagatggc 348
||||| || | | ||||| || || || || ||||| ||||| || || || || |||
Sbjct: 1585 atgctgggcgtcgtctaccgggacctgaagccggagaacgtcctggtgcgcgatgacggc 1644
Query: 349 cacatcatgctgtcggacttcgatctatctct 380
||||||||||| || |||||||| || |||||
Sbjct: 1645 cacatcatgctctccgacttcgacctctctct 1676
>ref|XM_467102.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2602
Score = 71.9 bits (36), Expect = 3e-010
Identities = 213/272 (78%)
Strand = Plus / Plus
Query: 109 ccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggttatg 168
||||| || ||||| ||||| || ||||||||||| |||| ||| ||||| |||| |||
Sbjct: 1404 ccattccttccaactctgtacacacactttgagactgacaggttctcatgtctggtcatg 1463
Query: 169 gaattctgccctggaggggatcttcacactcttcgccaaaggcagcctggaaaatatttt 228
|||||||| || || || ||||| |||||||| || ||| ||||||| |||| ||||
Sbjct: 1464 gaattctgtccgggtggtgatctgcacactctgcggcaacggcagccacgaaagcatttc 1523
Query: 229 tcagagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaatacctgcat 288
|| || | ||||||| ||| || | |||||||||||||| || |||| ||||||||
Sbjct: 1524 tctgaatatgcagcaaggttttacgccgctgaggtgctcctagctctggagtacctgcac 1583
Query: 289 atgcttgggattatataccgtgatcttaaaccagagaatgtcctcgttcgggaagatggc 348
||||| || | | ||||| || || || || ||||| ||||| || || || || |||
Sbjct: 1584 atgctgggcgtcgtctaccgggacctgaagccggagaacgtcctggtgcgcgatgacggc 1643
Query: 349 cacatcatgctgtcggacttcgatctatctct 380
||||||||||| || |||||||| || |||||
Sbjct: 1644 cacatcatgctctccgacttcgacctctctct 1675
>gb|CF324401.1|CF324401 HDN--06-G24.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-G24, mRNA sequence
Length = 499
Score = 65.9 bits (33), Expect = 2e-008
Identities = 178/224 (79%), Gaps = 2/224 (0%)
Strand = Plus / Plus
Query: 83 gggagatcctgcagtccctggaccatccatttctaccaaccctgtatactcactttgaga 142
||||||| |||||| |||||||||||| ||| | ||||| |||| ||||| |||||||
Sbjct: 264 gggagatattgcagtgcctggaccatccttttttgccaacattgtacactcattttgaga 323
Query: 143 cagacaagttttcatgctt-ggttatggaattctgccctggaggggatcttcacactctt 201
| || ||||| |||||| | || ||||| || ||||||||||| || || ||||| ||
Sbjct: 324 ctgataagttctcatgcctangtaatggagttttgccctggaggagacctgcacacccta 383
Query: 202 cgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctatgtagctgag 261
| |||| ||| || || || | |||| | || ||||| || ||||| ||||| ||||||
Sbjct: 384 aggcaaaagcaaccggggaagttttttccggaacaagctgccaagttttatgtggctgag 443
Query: 262 gtgctccttgcattggaatacctgcatatgcttgggattatata 305
||||| ||||| | || ||||||||||||||||| || |||||
Sbjct: 444 gtgcttcttgctctaga-tacctgcatatgcttggcatcatata 486
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 639,193
Number of Sequences: 438736
Number of extensions: 639193
Number of successful extensions: 12896
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11912
Number of HSP's gapped (non-prelim): 967
length of query: 457
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 436
effective length of database: 2,791,206,460
effective search space: 1216966016560
effective search space used: 1216966016560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)