BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (j... 369 1e-099
gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (j... 369 1e-099
dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA... 369 1e-099
ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA 369 1e-099
emb|AJ582955.1| Oryza sativa (japonica cultivar-group) part... 361 3e-097
gb|CF303361.1|CF303361 ABF1--02-A21.g1 ABF3-overexpressing ... 281 2e-073
dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chro... 159 2e-036
gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) c... 159 2e-036
dbj|AP004457.2| Oryza sativa (japonica cultivar-group) geno... 159 2e-036
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 159 2e-036
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 159 2e-036
gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (j... 109 2e-021
gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library O... 86 3e-014
gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library O... 86 3e-014
gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (j... 70 2e-009
gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing... 70 2e-009
gb|AC098696.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
gb|AACV01020888.1| Oryza sativa (japonica cultivar-group) c... 44 0.091
ref|NM_194969.1| Oryza sativa (japonica cultivar-group) put... 44 0.091
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 44 0.091
gb|CH401245.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.091
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.091
>gb|CB656872.1|CB656872 OSJNEc11L04.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11L04 3', mRNA sequence
Length = 865
Score = 369 bits (186), Expect = 1e-099
Identities = 456/547 (83%)
Strand = Plus / Plus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 171 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 230
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 231 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 290
Query: 126 ccgagcactgcggattccaaggctcccagagttaactggcctgatctcatgtaaatgctc 185
| ||||| || || ||||| || |||| |||||| ||| | || |||| ||||||||
Sbjct: 291 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 350
Query: 186 tctgacttaaaccgccctctctctcggataaataagtggtaaattgttccctttttggtg 245
|||| ||| ||||||||||| |||| || ||| |||||||| | |||| ||||| |
Sbjct: 351 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 410
Query: 246 gaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaatggatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || ||| |||||
Sbjct: 411 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 470
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 471 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 530
Query: 366 ttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcatcaggg 425
||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || |
Sbjct: 531 ttgaaagaatcagatgggccatcatacttccatctcaaagattgattaaaggcttcctga 590
Query: 426 tttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnttaata 485
||||| ||||||| |||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct: 591 tttgatgcaatatgtttcattgtcttggcaattgaaggaacatcatcaagctctttaatg 650
Query: 486 tgtaatattgcgccttctcccggagnaaactcttgaatatttggagcaccaacaacaacc 545
|||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||
Sbjct: 651 tgtaatattgcgccttctccaggagagaactcttgaatgtttggagcaccaatcacaact 710
Query: 546 ggaatag 552
|||||||
Sbjct: 711 ggaatag 717
>gb|CB669685.1|CB669685 OSJNEe02F21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 5', mRNA sequence
Length = 863
Score = 369 bits (186), Expect = 1e-099
Identities = 456/547 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 747 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 688
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 687 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 628
Query: 126 ccgagcactgcggattccaaggctcccagagttaactggcctgatctcatgtaaatgctc 185
| ||||| || || ||||| || |||| |||||| ||| | || |||| ||||||||
Sbjct: 627 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 568
Query: 186 tctgacttaaaccgccctctctctcggataaataagtggtaaattgttccctttttggtg 245
|||| ||| ||||||||||| |||| || ||| |||||||| | |||| ||||| |
Sbjct: 567 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 508
Query: 246 gaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaatggatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || ||| |||||
Sbjct: 507 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 448
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 447 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 388
Query: 366 ttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcatcaggg 425
||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || |
Sbjct: 387 ttgaaagaatcagatgggccatcatacttccatctcaaagattgattaaaggcttcctga 328
Query: 426 tttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnttaata 485
||||| ||||||| |||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct: 327 tttgatgcaatatgtttcattgtcttggcaattgaaggaacatcatcaagctctttaatg 268
Query: 486 tgtaatattgcgccttctcccggagnaaactcttgaatatttggagcaccaacaacaacc 545
|||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||
Sbjct: 267 tgtaatattgcgccttctccaggagagaactcttgaatgtttggagcaccaatcacaact 208
Query: 546 ggaatag 552
|||||||
Sbjct: 207 ggaatag 201
>dbj|AK099681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071F22, full
insert sequence
Length = 2097
Score = 369 bits (186), Expect = 1e-099
Identities = 456/547 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 1545 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 1486
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 1485 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 1426
Query: 126 ccgagcactgcggattccaaggctcccagagttaactggcctgatctcatgtaaatgctc 185
| ||||| || || ||||| || |||| |||||| ||| | || |||| ||||||||
Sbjct: 1425 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 1366
Query: 186 tctgacttaaaccgccctctctctcggataaataagtggtaaattgttccctttttggtg 245
|||| ||| ||||||||||| |||| || ||| |||||||| | |||| ||||| |
Sbjct: 1365 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 1306
Query: 246 gaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaatggatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || ||| |||||
Sbjct: 1305 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 1246
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 1245 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 1186
Query: 366 ttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcatcaggg 425
||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || |
Sbjct: 1185 ttgaaagaatcagatgggccatcatacttccatctcaaagattgattaaaggcttcctga 1126
Query: 426 tttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnttaata 485
||||| ||||||| |||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct: 1125 tttgatgcaatatgtttcattgtcttggcaattgaaggaacatcatcaagctctttaatg 1066
Query: 486 tgtaatattgcgccttctcccggagnaaactcttgaatatttggagcaccaacaacaacc 545
|||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||
Sbjct: 1065 tgtaatattgcgccttctccaggagagaactcttgaatgtttggagcaccaatcacaact 1006
Query: 546 ggaatag 552
|||||||
Sbjct: 1005 ggaatag 999
>ref|XM_482907.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2097
Score = 369 bits (186), Expect = 1e-099
Identities = 456/547 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 1546 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 1487
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 1486 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 1427
Query: 126 ccgagcactgcggattccaaggctcccagagttaactggcctgatctcatgtaaatgctc 185
| ||||| || || ||||| || |||| |||||| ||| | || |||| ||||||||
Sbjct: 1426 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 1367
Query: 186 tctgacttaaaccgccctctctctcggataaataagtggtaaattgttccctttttggtg 245
|||| ||| ||||||||||| |||| || ||| |||||||| | |||| ||||| |
Sbjct: 1366 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 1307
Query: 246 gaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaatggatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || ||| |||||
Sbjct: 1306 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 1247
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 1246 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 1187
Query: 366 ttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcatcaggg 425
||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || |
Sbjct: 1186 ttgaaagaatcagatgggccatcatacttccatctcaaagattgattaaaggcttcctga 1127
Query: 426 tttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnttaata 485
||||| ||||||| |||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct: 1126 tttgatgcaatatgtttcattgtcttggcaattgaaggaacatcatcaagctctttaatg 1067
Query: 486 tgtaatattgcgccttctcccggagnaaactcttgaatatttggagcaccaacaacaacc 545
|||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||
Sbjct: 1066 tgtaatattgcgccttctccaggagagaactcttgaatgtttggagcaccaatcacaact 1007
Query: 546 ggaatag 552
|||||||
Sbjct: 1006 ggaatag 1000
>emb|AJ582955.1| Oryza sativa (japonica cultivar-group) partial mRNA for glycoprotein
3-alpha-L-fucosyltransferase (FUT11 gene)
Length = 1419
Score = 361 bits (182), Expect = 3e-097
Identities = 455/547 (83%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 1328 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 1269
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 1268 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 1209
Query: 126 ccgagcactgcggattccaaggctcccagagttaactggcctgatctcatgtaaatgctc 185
| ||||| || || ||||| || |||| |||||| ||| | || |||| ||||||||
Sbjct: 1208 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 1149
Query: 186 tctgacttaaaccgccctctctctcggataaataagtggtaaattgttccctttttggtg 245
|||| ||| ||||||||||| |||| || ||| |||||||| | |||| ||||| |
Sbjct: 1148 tctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctcttttgctt 1089
Query: 246 gaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaatggatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || ||| |||||
Sbjct: 1088 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 1029
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 1028 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 969
Query: 366 ttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcatcaggg 425
||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || |
Sbjct: 968 ttgaaagaatcagatgggccatcatacttccatctcaaagattgattaaaggcttcctga 909
Query: 426 tttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnttaata 485
||||| ||||||| |||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct: 908 tttgatgcaatatgtttcattgtcttggcaattgaaggaacatcatcaagctctttaatg 849
Query: 486 tgtaatattgcgccttctcccggagnaaactcttgaatatttggagcaccaacaacaacc 545
|||||||||||||||||||| || | ||||||||||| ||||||||||||| |||||
Sbjct: 848 tgtaatattgcgccttctccaggggagaactcttgaatgtttggagcaccaatcacaact 789
Query: 546 ggaatag 552
|||||||
Sbjct: 788 ggaatag 782
>gb|CF303361.1|CF303361 ABF1--02-A21.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-A21, mRNA sequence
Length = 588
Score = 281 bits (142), Expect = 2e-073
Identities = 265/307 (86%)
Strand = Plus / Minus
Query: 246 gaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaatggatcttg 305
||||| ||||| || ||||| |||||||||| ||||||||||| || ||| |||||
Sbjct: 566 gaacaactacatgggcgattcataaattttggtgtcctttcctctttctcatgaatcttc 507
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataagagct 365
|| || | |||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 506 gtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaataagggcc 447
Query: 366 ttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcatcaggg 425
||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || |
Sbjct: 446 ttgaaagaatcagatgggccatcatacttccatctcaaagattgattaaaggcttcctga 387
Query: 426 tttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnttaata 485
||||| ||||||| |||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct: 386 tttgatgcaatatgtttcattgtcttggcaattgaaggaacatcatcaagctctttaatg 327
Query: 486 tgtaatattgcgccttctcccggagnaaactcttgaatatttggagcaccaacaacaacc 545
|||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||
Sbjct: 326 tgtaatattgcgccttctccaggagagaactcttgaatgtttggagcaccaatcacaact 267
Query: 546 ggaatag 552
|||||||
Sbjct: 266 ggaatag 260
>dbj|AP004162.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1320_D12,
*** SEQUENCING IN PROGRESS ***
Length = 89134
Score = 159 bits (80), Expect = 2e-036
Identities = 185/220 (84%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccct 237
|||||||||||| ||| ||||||||||| |||| || ||| |||||||| | ||||
Sbjct: 21255 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 21196
Query: 238 ttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaat 297
||||| | ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 21195 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 21136
Query: 298 ggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaa 357
| ||||| || || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 21135 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 21076
Query: 358 taagagctttgaaagaatcggatggaccatcatacttcca 397
|||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 21075 taagggccttgaaagaatcagatgggccatcatacttcca 21036
Score = 157 bits (79), Expect = 9e-036
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 397 acctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagcaa 456
|||||||||||||||| ||||| || | ||||| ||||||| |||||||||||| ||||
Sbjct: 20079 acctcaaagattgattaaaggcttcctgatttgatgcaatatgtttcattgtcttggcaa 20020
Query: 457 ctgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaact 516
||||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 20019 ttgaaggaacatcatcaagctctttaatgtgtaatattgcgccttctccaggagagaact 19960
Query: 517 cttgaatatttggagcaccaacaacaaccggaatag 552
||||||| ||||||||||||| ||||| |||||||
Sbjct: 19959 cttgaatgtttggagcaccaatcacaactggaatag 19924
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 22863 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 22804
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 22803 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 22744
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 22743 gcaagcacagcagactccaaagcacccatagttaa 22709
>gb|AACV01018706.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018706, whole
genome shotgun sequence
Length = 24223
Score = 159 bits (80), Expect = 2e-036
Identities = 185/220 (84%)
Strand = Plus / Plus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccct 237
|||||||||||| ||| ||||||||||| |||| || ||| |||||||| | ||||
Sbjct: 12787 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 12846
Query: 238 ttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaat 297
||||| | ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 12847 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 12906
Query: 298 ggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaa 357
| ||||| || || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 12907 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 12966
Query: 358 taagagctttgaaagaatcggatggaccatcatacttcca 397
|||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 12967 taagggccttgaaagaatcagatgggccatcatacttcca 13006
Score = 157 bits (79), Expect = 9e-036
Identities = 136/156 (87%)
Strand = Plus / Plus
Query: 397 acctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagcaa 456
|||||||||||||||| ||||| || | ||||| ||||||| |||||||||||| ||||
Sbjct: 13963 acctcaaagattgattaaaggcttcctgatttgatgcaatatgtttcattgtcttggcaa 14022
Query: 457 ctgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaact 516
||||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 14023 ttgaaggaacatcatcaagctctttaatgtgtaatattgcgccttctccaggagagaact 14082
Query: 517 cttgaatatttggagcaccaacaacaaccggaatag 552
||||||| ||||||||||||| ||||| |||||||
Sbjct: 14083 cttgaatgtttggagcaccaatcacaactggaatag 14118
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 11179 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 11238
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 11239 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 11298
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 11299 gcaagcacagcagactccaaagcacccatagttaa 11333
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0013B04
Length = 141319
Score = 159 bits (80), Expect = 2e-036
Identities = 185/220 (84%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccct 237
|||||||||||| ||| ||||||||||| |||| || ||| |||||||| | ||||
Sbjct: 71431 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 71372
Query: 238 ttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaat 297
||||| | ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 71371 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 71312
Query: 298 ggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaa 357
| ||||| || || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 71311 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 71252
Query: 358 taagagctttgaaagaatcggatggaccatcatacttcca 397
|||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 71251 taagggccttgaaagaatcagatgggccatcatacttcca 71212
Score = 157 bits (79), Expect = 9e-036
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 397 acctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagcaa 456
|||||||||||||||| ||||| || | ||||| ||||||| |||||||||||| ||||
Sbjct: 70255 acctcaaagattgattaaaggcttcctgatttgatgcaatatgtttcattgtcttggcaa 70196
Query: 457 ctgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaact 516
||||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 70195 ttgaaggaacatcatcaagctctttaatgtgtaatattgcgccttctccaggagagaact 70136
Query: 517 cttgaatatttggagcaccaacaacaaccggaatag 552
||||||| ||||||||||||| ||||| |||||||
Sbjct: 70135 cttgaatgtttggagcaccaatcacaactggaatag 70100
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 73039 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 72980
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 72979 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 72920
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 72919 gcaagcacagcagactccaaagcacccatagttaa 72885
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 159 bits (80), Expect = 2e-036
Identities = 185/220 (84%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccct 237
|||||||||||| ||| ||||||||||| |||| || ||| |||||||| | ||||
Sbjct: 23033993 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 23033934
Query: 238 ttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaat 297
||||| | ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 23033933 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 23033874
Query: 298 ggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaa 357
| ||||| || || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 23033873 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 23033814
Query: 358 taagagctttgaaagaatcggatggaccatcatacttcca 397
|||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 23033813 taagggccttgaaagaatcagatgggccatcatacttcca 23033774
Score = 157 bits (79), Expect = 9e-036
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 397 acctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagcaa 456
|||||||||||||||| ||||| || | ||||| ||||||| |||||||||||| ||||
Sbjct: 23032817 acctcaaagattgattaaaggcttcctgatttgatgcaatatgtttcattgtcttggcaa 23032758
Query: 457 ctgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaact 516
||||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 23032757 ttgaaggaacatcatcaagctctttaatgtgtaatattgcgccttctccaggagagaact 23032698
Query: 517 cttgaatatttggagcaccaacaacaaccggaatag 552
||||||| ||||||||||||| ||||| |||||||
Sbjct: 23032697 cttgaatgtttggagcaccaatcacaactggaatag 23032662
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 23035601 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 23035542
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 23035541 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 23035482
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 23035481 gcaagcacagcagactccaaagcacccatagttaa 23035447
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 159 bits (80), Expect = 2e-036
Identities = 185/220 (84%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccct 237
|||||||||||| ||| ||||||||||| |||| || ||| |||||||| | ||||
Sbjct: 14509958 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 14509899
Query: 238 ttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaat 297
||||| | ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 14509898 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 14509839
Query: 298 ggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaa 357
| ||||| || || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 14509838 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 14509779
Query: 358 taagagctttgaaagaatcggatggaccatcatacttcca 397
|||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 14509778 taagggccttgaaagaatcagatgggccatcatacttcca 14509739
Score = 157 bits (79), Expect = 9e-036
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 397 acctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagcaa 456
|||||||||||||||| ||||| || | ||||| ||||||| |||||||||||| ||||
Sbjct: 14508782 acctcaaagattgattaaaggcttcctgatttgatgcaatatgtttcattgtcttggcaa 14508723
Query: 457 ctgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaact 516
||||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 14508722 ttgaaggaacatcatcaagctctttaatgtgtaatattgcgccttctccaggagagaact 14508663
Query: 517 cttgaatatttggagcaccaacaacaaccggaatag 552
||||||| ||||||||||||| ||||| |||||||
Sbjct: 14508662 cttgaatgtttggagcaccaatcacaactggaatag 14508627
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 14511566 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 14511507
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 14511506 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 14511447
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 14511446 gcaagcacagcagactccaaagcacccatagttaa 14511412
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 159 bits (80), Expect = 2e-036
Identities = 185/220 (84%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccct 237
|||||||||||| ||| ||||||||||| |||| || ||| |||||||| | ||||
Sbjct: 22111964 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 22111905
Query: 238 ttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaat 297
||||| | ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 22111904 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 22111845
Query: 298 ggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaa 357
| ||||| || || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 22111844 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 22111785
Query: 358 taagagctttgaaagaatcggatggaccatcatacttcca 397
|||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 22111784 taagggccttgaaagaatcagatgggccatcatacttcca 22111745
Score = 157 bits (79), Expect = 9e-036
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 397 acctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagcaa 456
|||||||||||||||| ||||| || | ||||| ||||||| |||||||||||| ||||
Sbjct: 22110788 acctcaaagattgattaaaggcttcctgatttgatgcaatatgtttcattgtcttggcaa 22110729
Query: 457 ctgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaact 516
||||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 22110728 ttgaaggaacatcatcaagctctttaatgtgtaatattgcgccttctccaggagagaact 22110669
Query: 517 cttgaatatttggagcaccaacaacaaccggaatag 552
||||||| ||||||||||||| ||||| |||||||
Sbjct: 22110668 cttgaatgtttggagcaccaatcacaactggaatag 22110633
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 22113572 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 22113513
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 22113512 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 22113453
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 22113452 gcaagcacagcagactccaaagcacccatagttaa 22113418
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 159 bits (80), Expect = 2e-036
Identities = 185/220 (84%)
Strand = Plus / Minus
Query: 178 aaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccct 237
|||||||||||| ||| ||||||||||| |||| || ||| |||||||| | ||||
Sbjct: 23272080 aaatgctctctgtcttgaaccgccctctttctctgacaaacaagtggtatacctttcctc 23272021
Query: 238 ttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaat 297
||||| | ||||| ||||| || ||||| |||||||||| ||||||||||| || ||
Sbjct: 23272020 ttttgcttgaacaactacatgggcgattcataaattttggtgtcctttcctctttctcat 23271961
Query: 298 ggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaa 357
| ||||| || || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 23271960 gaatcttcgtcgcgacatgtatgcaaagacgacatgatgaatgaaccgctgccatgtcaa 23271901
Query: 358 taagagctttgaaagaatcggatggaccatcatacttcca 397
|||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 23271900 taagggccttgaaagaatcagatgggccatcatacttcca 23271861
Score = 157 bits (79), Expect = 9e-036
Identities = 136/156 (87%)
Strand = Plus / Minus
Query: 397 acctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgtcttagcaa 456
|||||||||||||||| ||||| || | ||||| ||||||| |||||||||||| ||||
Sbjct: 23270904 acctcaaagattgattaaaggcttcctgatttgatgcaatatgtttcattgtcttggcaa 23270845
Query: 457 ctgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaact 516
||||| |||||||||||||| ||||| |||||||||||||||||||| |||| ||||
Sbjct: 23270844 ttgaaggaacatcatcaagctctttaatgtgtaatattgcgccttctccaggagagaact 23270785
Query: 517 cttgaatatttggagcaccaacaacaaccggaatag 552
||||||| ||||||||||||| ||||| |||||||
Sbjct: 23270784 cttgaatgtttggagcaccaatcacaactggaatag 23270749
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 23273688 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 23273629
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 23273628 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 23273569
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 23273568 gcaagcacagcagactccaaagcacccatagttaa 23273534
>gb|CB643658.1|CB643658 OSJNEb04H13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04H13 3', mRNA sequence
Length = 861
Score = 109 bits (55), Expect = 2e-021
Identities = 178/219 (81%)
Strand = Plus / Plus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||||| ||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 621 gcctgacattgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 680
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 681 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 740
Query: 126 ccgagcactgcggattccaaggctcccagagttaactggcctgatctcatgtaaatgctc 185
| ||||| || || ||||| || |||| |||||| ||| | || |||| ||||||||
Sbjct: 741 gcaagcacagcagactccaaagcacccatagttaattggtccgacctcagaaaaatgctc 800
Query: 186 tctgacttaaaccgccctctctctcggataaataagtgg 224
|||| ||| ||||||||||| |||| || ||| ||||||
Sbjct: 801 tctgtcttgaaccgccctctttctctgacaaacaagtgg 839
>gb|AQ271924.1|AQ271924 nbxb0027A03f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027A03f, DNA sequence
Length = 604
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 67 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 126
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 127 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 186
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 187 gcaagcacagcagactccaaagcacccatagttaa 221
>gb|AQ328306.1|AQ328306 nbxb0042F18f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042F18f, DNA sequence
Length = 616
Score = 85.7 bits (43), Expect = 3e-014
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 67 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 126
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgagggacctaaattta 125
||||| || ||||| |||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 127 ctaatacttggtggtctttcatccttccacacaggaacatgattgagcgatctaaattta 186
Query: 126 ccgagcactgcggattccaaggctcccagagttaa 160
| ||||| || || ||||| || |||| ||||||
Sbjct: 187 gcaagcacagcagactccaaagcacccatagttaa 221
>gb|CB669686.1|CB669686 OSJNEe02F21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F21 3', mRNA sequence
Length = 771
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 661 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 720
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgag 112
||||| || ||||| |||||||||||||| |||||||| || |||||
Sbjct: 721 ctaatacttggtggtctttcatccttccacacaggaacatgattgag 767
>gb|CF325655.1|CF325655 JMT1--03-N05.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-N05, mRNA sequence
Length = 378
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 6 gcctgacgttgcgttagaccgactgggtaaattctgtataatttcaggtcatccccacct 65
||||| ||||| || || |||| ||| |||||| |||||| |||| || |||||||||
Sbjct: 266 gcctgtcgttgtgtaaggccgattggataaattttgtataccttcaactcgtccccacct 325
Query: 66 ctaatgctcggtggcctttcatccttccatacaggaacgtggttgag 112
||||| || ||||| |||||||||||||| |||||||| || |||||
Sbjct: 326 ctaatacttggtggtctttcatccttccacacaggaacatgattgag 372
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08,
complete sequence
Length = 180499
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 121440 ctttcctcctttaaatggatct 121419
>gb|AACV01020888.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020888, whole
genome shotgun sequence
Length = 16571
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 9323 ctttcctcctttaaatggatct 9302
>ref|NM_194969.1| Oryza sativa (japonica cultivar-group) putative retroelement
(OSJNBa0050E08.15), mRNA
Length = 2295
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 1622 ctttcctcctttaaatggatct 1601
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 3844650 ctttcctcctttaaatggatct 3844629
>gb|CH401245.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000082
genomic scaffold, whole genome shotgun sequence
Length = 3323203
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 638383 ctttcctcctttaaatggatct 638362
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 3906834 ctttcctcctttaaatggatct 3906813
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 3839644 ctttcctcctttaaatggatct 3839623
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 44.1 bits (22), Expect = 0.091
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 ctttcctcctttaaatggatct 303
||||||||||||||||||||||
Sbjct: 3839565 ctttcctcctttaaatggatct 3839544
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 980,651
Number of Sequences: 438736
Number of extensions: 980651
Number of successful extensions: 4907
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4760
Number of HSP's gapped (non-prelim): 122
length of query: 637
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 616
effective length of database: 2,791,206,460
effective search space: 1719383179360
effective search space used: 1719383179360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)