BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH13e05.yg.2.1
(577 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070606.1| Oryza sativa (japonica cultivar-group) cDNA... 385 e-104
dbj|AP003509.3| Oryza sativa (japonica cultivar-group) geno... 240 7e-061
gb|AACV01018395.1| Oryza sativa (japonica cultivar-group) c... 240 7e-061
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 240 7e-061
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 240 7e-061
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 240 7e-061
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 240 7e-061
ref|XM_466403.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-005
gb|CF305801.1|CF305801 HDA1--01-M12.g1 OsHDAC1-overexpressi... 48 0.005
>dbj|AK070606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056D08, full
insert sequence
Length = 3132
Score = 385 bits (194), Expect = e-104
Identities = 302/338 (89%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||||
Sbjct: 2628 ttgcaacatgttcctcgttttgttttcagaaatttgtcccataggcacatcatgtccctt 2569
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||
Sbjct: 2568 ggctcctggtaatgtgcaaccacatatccttcctcacagccttcgaccaaaatcctccca 2509
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2508 tcattttcatactttacatccaacccatccttcttcatctcattgatccatattcccatt 2449
Query: 414 gcgacatcctccagcttgaacatctttaactccccactcttgtgtttcctgtaaacttct 473
|||||||| || || ||||||||||| | || || ||||||||||||||||||||||||
Sbjct: 2448 gcgacatcttctagtttgaacatcttaagttctcctctcttgtgtttcctgtaaacttct 2389
Query: 474 ttagctatgtcctttgaaacaatatatcctggtccatgcgcccagggaggataactctcc 533
|| |||||||| | ||| ||||| ||||| || ||||| ||||| |||||||||||||||
Sbjct: 2388 tttgctatgtcttgtgatacaatgtatcccggaccatgtgcccatggaggataactctcc 2329
Query: 534 tcaggccattcctcaggggttatgtaccacttgctata 571
|||||||||||||| |||||||||||||||||||||||
Sbjct: 2328 tcaggccattcctctggggttatgtaccacttgctata 2291
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0525F01
Length = 151668
Score = 240 bits (121), Expect = 7e-061
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||||
Sbjct: 61892 ttgcaacatgttcctcgttttgttttcagaaatttgtcccataggcacatcatgtccctt 61833
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||
Sbjct: 61832 ggctcctggtaatgtgcaaccacatatccttcctcacagccttcgaccaaaatcctccca 61773
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61772 tcattttcatactttacatccaacccatccttcttcatctcattgatccatattcccatt 61713
Query: 414 gcgacatcctccagcttgaacatct 438
|||||||| || || ||||||||||
Sbjct: 61712 gcgacatcttctagtttgaacatct 61688
Score = 121 bits (61), Expect = 4e-025
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 450 ctcttgtgtttcctgtaaacttctttagctatgtcctttgaaacaatatatcctggtcca 509
|||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || |||
Sbjct: 61492 ctcttgtgtttcctgtaaacttcttttgctatgtcttgtgatacaatgtatcccggacca 61433
Query: 510 tgcgcccagggaggataactctcctcaggccattcct 546
|| ||||| ||||||||||||||||||||||||||||
Sbjct: 61432 tgtgcccatggaggataactctcctcaggccattcct 61396
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 544 cctcaggggttatgtaccacttgctata 571
|||| |||||||||||||||||||||||
Sbjct: 61175 cctctggggttatgtaccacttgctata 61148
>gb|AACV01018395.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018395, whole
genome shotgun sequence
Length = 49262
Score = 240 bits (121), Expect = 7e-061
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||||
Sbjct: 40910 ttgcaacatgttcctcgttttgttttcagaaatttgtcccataggcacatcatgtccctt 40969
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||
Sbjct: 40970 ggctcctggtaatgtgcaaccacatatccttcctcacagccttcgaccaaaatcctccca 41029
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 41030 tcattttcatactttacatccaacccatccttcttcatctcattgatccatattcccatt 41089
Query: 414 gcgacatcctccagcttgaacatct 438
|||||||| || || ||||||||||
Sbjct: 41090 gcgacatcttctagtttgaacatct 41114
Score = 121 bits (61), Expect = 4e-025
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 450 ctcttgtgtttcctgtaaacttctttagctatgtcctttgaaacaatatatcctggtcca 509
|||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || |||
Sbjct: 41310 ctcttgtgtttcctgtaaacttcttttgctatgtcttgtgatacaatgtatcccggacca 41369
Query: 510 tgcgcccagggaggataactctcctcaggccattcct 546
|| ||||| ||||||||||||||||||||||||||||
Sbjct: 41370 tgtgcccatggaggataactctcctcaggccattcct 41406
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 544 cctcaggggttatgtaccacttgctata 571
|||| |||||||||||||||||||||||
Sbjct: 41627 cctctggggttatgtaccacttgctata 41654
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 240 bits (121), Expect = 7e-061
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||||
Sbjct: 2423793 ttgcaacatgttcctcgttttgttttcagaaatttgtcccataggcacatcatgtccctt 2423734
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||
Sbjct: 2423733 ggctcctggtaatgtgcaaccacatatccttcctcacagccttcgaccaaaatcctccca 2423674
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2423673 tcattttcatactttacatccaacccatccttcttcatctcattgatccatattcccatt 2423614
Query: 414 gcgacatcctccagcttgaacatct 438
|||||||| || || ||||||||||
Sbjct: 2423613 gcgacatcttctagtttgaacatct 2423589
Score = 121 bits (61), Expect = 4e-025
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 450 ctcttgtgtttcctgtaaacttctttagctatgtcctttgaaacaatatatcctggtcca 509
|||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || |||
Sbjct: 2423393 ctcttgtgtttcctgtaaacttcttttgctatgtcttgtgatacaatgtatcccggacca 2423334
Query: 510 tgcgcccagggaggataactctcctcaggccattcct 546
|| ||||| ||||||||||||||||||||||||||||
Sbjct: 2423333 tgtgcccatggaggataactctcctcaggccattcct 2423297
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 544 cctcaggggttatgtaccacttgctata 571
|||| |||||||||||||||||||||||
Sbjct: 2423076 cctctggggttatgtaccacttgctata 2423049
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 240 bits (121), Expect = 7e-061
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||||
Sbjct: 9815983 ttgcaacatgttcctcgttttgttttcagaaatttgtcccataggcacatcatgtccctt 9815924
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||
Sbjct: 9815923 ggctcctggtaatgtgcaaccacatatccttcctcacagccttcgaccaaaatcctccca 9815864
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9815863 tcattttcatactttacatccaacccatccttcttcatctcattgatccatattcccatt 9815804
Query: 414 gcgacatcctccagcttgaacatct 438
|||||||| || || ||||||||||
Sbjct: 9815803 gcgacatcttctagtttgaacatct 9815779
Score = 121 bits (61), Expect = 4e-025
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 450 ctcttgtgtttcctgtaaacttctttagctatgtcctttgaaacaatatatcctggtcca 509
|||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || |||
Sbjct: 9815583 ctcttgtgtttcctgtaaacttcttttgctatgtcttgtgatacaatgtatcccggacca 9815524
Query: 510 tgcgcccagggaggataactctcctcaggccattcct 546
|| ||||| ||||||||||||||||||||||||||||
Sbjct: 9815523 tgtgcccatggaggataactctcctcaggccattcct 9815487
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 544 cctcaggggttatgtaccacttgctata 571
|||| |||||||||||||||||||||||
Sbjct: 9815266 cctctggggttatgtaccacttgctata 9815239
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 240 bits (121), Expect = 7e-061
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||||
Sbjct: 17417989 ttgcaacatgttcctcgttttgttttcagaaatttgtcccataggcacatcatgtccctt 17417930
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||
Sbjct: 17417929 ggctcctggtaatgtgcaaccacatatccttcctcacagccttcgaccaaaatcctccca 17417870
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 17417869 tcattttcatactttacatccaacccatccttcttcatctcattgatccatattcccatt 17417810
Query: 414 gcgacatcctccagcttgaacatct 438
|||||||| || || ||||||||||
Sbjct: 17417809 gcgacatcttctagtttgaacatct 17417785
Score = 121 bits (61), Expect = 4e-025
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 450 ctcttgtgtttcctgtaaacttctttagctatgtcctttgaaacaatatatcctggtcca 509
|||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || |||
Sbjct: 17417589 ctcttgtgtttcctgtaaacttcttttgctatgtcttgtgatacaatgtatcccggacca 17417530
Query: 510 tgcgcccagggaggataactctcctcaggccattcct 546
|| ||||| ||||||||||||||||||||||||||||
Sbjct: 17417529 tgtgcccatggaggataactctcctcaggccattcct 17417493
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 544 cctcaggggttatgtaccacttgctata 571
|||| |||||||||||||||||||||||
Sbjct: 17417272 cctctggggttatgtaccacttgctata 17417245
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 240 bits (121), Expect = 7e-061
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||||||
Sbjct: 6732213 ttgcaacatgttcctcgttttgttttcagaaatttgtcccataggcacatcatgtccctt 6732154
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
|| || |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||
Sbjct: 6732153 ggctcctggtaatgtgcaaccacatatccttcctcacagccttcgaccaaaatcctccca 6732094
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattcccatt 413
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6732093 tcattttcatactttacatccaacccatccttcttcatctcattgatccatattcccatt 6732034
Query: 414 gcgacatcctccagcttgaacatct 438
|||||||| || || ||||||||||
Sbjct: 6732033 gcgacatcttctagtttgaacatct 6732009
Score = 121 bits (61), Expect = 4e-025
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 450 ctcttgtgtttcctgtaaacttctttagctatgtcctttgaaacaatatatcctggtcca 509
|||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || |||
Sbjct: 6731813 ctcttgtgtttcctgtaaacttcttttgctatgtcttgtgatacaatgtatcccggacca 6731754
Query: 510 tgcgcccagggaggataactctcctcaggccattcct 546
|| ||||| ||||||||||||||||||||||||||||
Sbjct: 6731753 tgtgcccatggaggataactctcctcaggccattcct 6731717
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 544 cctcaggggttatgtaccacttgctata 571
|||| |||||||||||||||||||||||
Sbjct: 6731496 cctctggggttatgtaccacttgctata 6731469
>ref|XM_466403.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1866
Score = 56.0 bits (28), Expect = 2e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 497 atatcctggtccatgcgcccagggaggataactctcctcaggccattcctcaggggttat 556
|||||||||||| || ||||| || || || |||| |||||||||||||| ||| ||||
Sbjct: 1599 atatcctggtccgtgtgcccatggtgggtatttctcttcaggccattcctctgggcttat 1540
Query: 557 gtaccacttgct 568
|||||| |||||
Sbjct: 1539 gtaccatttgct 1528
Score = 44.1 bits (22), Expect = 0.082
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 382 ccttcttcatctcattgatccatattcccattgcgacatcctccagcttgaacatctt 439
|||||||||| ||| |||||||| |||||||| ||||| || || |||||||||||
Sbjct: 1714 ccttcttcatttcagcaatccatatacccattgctacatcttctagtttgaacatctt 1657
>gb|CF305801.1|CF305801 HDA1--01-M12.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--01-M12, mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 544 cctcaggggttatgtaccacttgctata 571
|||| |||||||||||||||||||||||
Sbjct: 584 cctctggggttatgtaccacttgctata 557
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 919,663
Number of Sequences: 438736
Number of extensions: 919663
Number of successful extensions: 22131
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21945
Number of HSP's gapped (non-prelim): 186
length of query: 577
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 556
effective length of database: 2,791,206,460
effective search space: 1551910791760
effective search space used: 1551910791760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)