BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100891.1| Oryza sativa (japonica cultivar-group) cDNA... 293 6e-077
ref|XM_477949.1| Oryza sativa (japonica cultivar-group), mRNA 293 6e-077
dbj|AP005641.4| Oryza sativa (japonica cultivar-group) geno... 222 2e-055
gb|AACV01016065.1| Oryza sativa (japonica cultivar-group) c... 222 2e-055
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 222 2e-055
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 222 2e-055
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.36
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.36
dbj|AP005728.2| Oryza sativa (japonica cultivar-group) geno... 42 0.36
gb|AACV01019852.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
ref|NT_107082.1| Oryza sativa (japonica cultivar-group) 42 0.36
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
>dbj|AK100891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130H08, full
insert sequence
Length = 3792
Score = 293 bits (148), Expect = 6e-077
Identities = 418/508 (82%)
Strand = Plus / Plus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 972 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 1031
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1032 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 1091
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 1092 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 1151
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 1152 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 1211
Query: 354 gagttgatgggattgttcaaggccaggttgaagtcaaagcaacccttaggttgcaaaatg 413
|||||||||||| | | || | |||||||| ||||||||| | |||||||| ||
Sbjct: 1212 gagttgatgggaatatccatacgaaagttgaagttaaagcaaccttgaggttgcataaca 1271
Query: 414 cagatggatcaacacattataaccctgttggaagtgtggttgcctcaaaagaaaagtgga 473
|||||| ||||| || || | || |||||||| || | || |||||||||||||||
Sbjct: 1272 cagatgattcaacgcactacagtccagttggaagcctgttagcttcaaaagaaaagtggg 1331
Query: 474 acaaattggaaggttccttttctttaacaaacatgccaaaaaatgttgtattttacctgg 533
| || ||||||| ||||||| || ||||| ||||||||| ||| ||||| |||||||
Sbjct: 1332 agaagatggaaggatccttttgcttgacaaatatgccaaaacgtgtagtattctacctgg 1391
Query: 534 aaggacctcctgctggtgtggatcttgtcattgattctgtcactgttgcttgctccagac 593
|||||||||||||||| ||||| ||| |||||||||| || | ||| ||||||| ||
Sbjct: 1392 aaggacctcctgctggcgtggaccttatcattgattccgtaaatgtaacttgctctggat 1451
Query: 594 ataaacagtcaaaagaagtaaaagtacc 621
|| | |||| ||||||||||||||||||
Sbjct: 1452 atcagcagttaaaagaagtaaaagtacc 1479
Score = 105 bits (53), Expect = 3e-020
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaagaaa 97
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct: 884 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaagaaa 943
Query: 98 acag 101
||||
Sbjct: 944 acag 947
>ref|XM_477949.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3793
Score = 293 bits (148), Expect = 6e-077
Identities = 418/508 (82%)
Strand = Plus / Plus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 973 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 1032
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1033 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 1092
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 1093 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 1152
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 1153 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 1212
Query: 354 gagttgatgggattgttcaaggccaggttgaagtcaaagcaacccttaggttgcaaaatg 413
|||||||||||| | | || | |||||||| ||||||||| | |||||||| ||
Sbjct: 1213 gagttgatgggaatatccatacgaaagttgaagttaaagcaaccttgaggttgcataaca 1272
Query: 414 cagatggatcaacacattataaccctgttggaagtgtggttgcctcaaaagaaaagtgga 473
|||||| ||||| || || | || |||||||| || | || |||||||||||||||
Sbjct: 1273 cagatgattcaacgcactacagtccagttggaagcctgttagcttcaaaagaaaagtggg 1332
Query: 474 acaaattggaaggttccttttctttaacaaacatgccaaaaaatgttgtattttacctgg 533
| || ||||||| ||||||| || ||||| ||||||||| ||| ||||| |||||||
Sbjct: 1333 agaagatggaaggatccttttgcttgacaaatatgccaaaacgtgtagtattctacctgg 1392
Query: 534 aaggacctcctgctggtgtggatcttgtcattgattctgtcactgttgcttgctccagac 593
|||||||||||||||| ||||| ||| |||||||||| || | ||| ||||||| ||
Sbjct: 1393 aaggacctcctgctggcgtggaccttatcattgattccgtaaatgtaacttgctctggat 1452
Query: 594 ataaacagtcaaaagaagtaaaagtacc 621
|| | |||| ||||||||||||||||||
Sbjct: 1453 atcagcagttaaaagaagtaaaagtacc 1480
Score = 105 bits (53), Expect = 3e-020
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaagaaa 97
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct: 885 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaagaaa 944
Query: 98 acag 101
||||
Sbjct: 945 acag 948
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0027N13
Length = 179669
Score = 222 bits (112), Expect = 2e-055
Identities = 217/252 (86%)
Strand = Plus / Plus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 72237 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 72296
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 72297 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 72356
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 72357 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 72416
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 72417 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 72476
Query: 354 gagttgatggga 365
||||||||||||
Sbjct: 72477 gagttgatggga 72488
Score = 97.6 bits (49), Expect = 7e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 458 tcaaaagaaaagtggaacaaattggaaggttccttttctttaacaaacatgccaaaaaat 517
||||||||||||||| | || ||||||| ||||||| || ||||| ||||||||| |
Sbjct: 72658 tcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgt 72717
Query: 518 gttgtattttacctggaaggacctcctgctggtgtggatcttgtcattgattc 570
|| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 72718 gtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattc 72770
Score = 91.7 bits (46), Expect = 4e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaag 94
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 71802 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaag 71858
>gb|AACV01016065.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016065, whole
genome shotgun sequence
Length = 38425
Score = 222 bits (112), Expect = 2e-055
Identities = 217/252 (86%)
Strand = Plus / Minus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 18604 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 18545
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 18544 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 18485
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 18484 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 18425
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 18424 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 18365
Query: 354 gagttgatggga 365
||||||||||||
Sbjct: 18364 gagttgatggga 18353
Score = 97.6 bits (49), Expect = 7e-018
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 458 tcaaaagaaaagtggaacaaattggaaggttccttttctttaacaaacatgccaaaaaat 517
||||||||||||||| | || ||||||| ||||||| || ||||| ||||||||| |
Sbjct: 18183 tcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgt 18124
Query: 518 gttgtattttacctggaaggacctcctgctggtgtggatcttgtcattgattc 570
|| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 18123 gtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattc 18071
Score = 91.7 bits (46), Expect = 4e-016
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaag 94
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 19039 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaag 18983
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 222 bits (112), Expect = 2e-055
Identities = 217/252 (86%)
Strand = Plus / Plus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 3455798 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 3455857
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 3455858 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 3455917
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 3455918 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 3455977
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 3455978 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 3456037
Query: 354 gagttgatggga 365
||||||||||||
Sbjct: 3456038 gagttgatggga 3456049
Score = 97.6 bits (49), Expect = 7e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 458 tcaaaagaaaagtggaacaaattggaaggttccttttctttaacaaacatgccaaaaaat 517
||||||||||||||| | || ||||||| ||||||| || ||||| ||||||||| |
Sbjct: 3456219 tcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgt 3456278
Query: 518 gttgtattttacctggaaggacctcctgctggtgtggatcttgtcattgattc 570
|| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 3456279 gtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattc 3456331
Score = 91.7 bits (46), Expect = 4e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaag 94
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 3455363 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaag 3455419
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 222 bits (112), Expect = 2e-055
Identities = 217/252 (86%)
Strand = Plus / Plus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 1508112 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 1508171
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1508172 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 1508231
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 1508232 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 1508291
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 1508292 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 1508351
Query: 354 gagttgatggga 365
||||||||||||
Sbjct: 1508352 gagttgatggga 1508363
Score = 97.6 bits (49), Expect = 7e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 458 tcaaaagaaaagtggaacaaattggaaggttccttttctttaacaaacatgccaaaaaat 517
||||||||||||||| | || ||||||| ||||||| || ||||| ||||||||| |
Sbjct: 1508533 tcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgt 1508592
Query: 518 gttgtattttacctggaaggacctcctgctggtgtggatcttgtcattgattc 570
|| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 1508593 gtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattc 1508645
Score = 91.7 bits (46), Expect = 4e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaag 94
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 1507677 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaag 1507733
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 222 bits (112), Expect = 2e-055
Identities = 217/252 (86%)
Strand = Plus / Plus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 14907551 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 14907610
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 14907611 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 14907670
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 14907671 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 14907730
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 14907731 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 14907790
Query: 354 gagttgatggga 365
||||||||||||
Sbjct: 14907791 gagttgatggga 14907802
Score = 97.6 bits (49), Expect = 7e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 458 tcaaaagaaaagtggaacaaattggaaggttccttttctttaacaaacatgccaaaaaat 517
||||||||||||||| | || ||||||| ||||||| || ||||| ||||||||| |
Sbjct: 14907972 tcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgt 14908031
Query: 518 gttgtattttacctggaaggacctcctgctggtgtggatcttgtcattgattc 570
|| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 14908032 gtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattc 14908084
Score = 91.7 bits (46), Expect = 4e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaag 94
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 14907116 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaag 14907172
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 222 bits (112), Expect = 2e-055
Identities = 217/252 (86%)
Strand = Plus / Plus
Query: 114 gtggaacagagaacatcattttaaattatgatttttcgaaaggccttcatccttggaatc 173
|||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
Sbjct: 15832723 gtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaacc 15832782
Query: 174 ccatccgctgccatgcatatgcggcatcacaatggtctggtttccttgatggtattagag 233
| ||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 15832783 ctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagag 15832842
Query: 234 ggaactcaggagagaactatgctgttgtttcaaagagaacagaacactggcagggtcttg 293
||| ||||||||| || |||||||| ||||| |||||||| ||| |||||| |||||||
Sbjct: 15832843 ggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttg 15832902
Query: 294 aacaagatattacaaatcaagtgtctacaggcactgtttatgtcgtttctgctttcgtta 353
|||||||||||||| || |||| ||| | || |||| ||||| || || || | ||||
Sbjct: 15832903 aacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgtta 15832962
Query: 354 gagttgatggga 365
||||||||||||
Sbjct: 15832963 gagttgatggga 15832974
Score = 97.6 bits (49), Expect = 7e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 458 tcaaaagaaaagtggaacaaattggaaggttccttttctttaacaaacatgccaaaaaat 517
||||||||||||||| | || ||||||| ||||||| || ||||| ||||||||| |
Sbjct: 15833144 tcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgt 15833203
Query: 518 gttgtattttacctggaaggacctcctgctggtgtggatcttgtcattgattc 570
|| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 15833204 gtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattc 15833256
Score = 91.7 bits (46), Expect = 4e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 38 gaaggcccccctcctggtgtngatttgctcatagattcggtcaccatctcctacaag 94
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 15832288 gaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaag 15832344
>dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00123T, 3'
flanking sequence of Tos17 insertion in rice strain
H0449, genomic survey sequence
Length = 381
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 615 aagtacctgcccgggcggccg 635
|||||||||||||||||||||
Sbjct: 352 aagtacctgcccgggcggccg 372
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 615 aagtacctgcccgggcggccg 635
|||||||||||||||||||||
Sbjct: 199 aagtacctgcccgggcggccg 219
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0048A13
Length = 137680
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 aaaggccttcatccttggaat 172
|||||||||||||||||||||
Sbjct: 61207 aaaggccttcatccttggaat 61227
>gb|AACV01019852.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019852, whole
genome shotgun sequence
Length = 41823
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 152 aaaggccttcatccttggaat 172
|||||||||||||||||||||
Sbjct: 5779 aaaggccttcatccttggaat 5759
>ref|NT_107082.1| Oryza sativa (japonica cultivar-group)
Length = 2185602
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 aaaggccttcatccttggaat 172
|||||||||||||||||||||
Sbjct: 1772805 aaaggccttcatccttggaat 1772825
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 aaaggccttcatccttggaat 172
|||||||||||||||||||||
Sbjct: 2502148 aaaggccttcatccttggaat 2502168
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 aaaggccttcatccttggaat 172
|||||||||||||||||||||
Sbjct: 11975959 aaaggccttcatccttggaat 11975979
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 aaaggccttcatccttggaat 172
|||||||||||||||||||||
Sbjct: 13139117 aaaggccttcatccttggaat 13139137
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,036,773
Number of Sequences: 438736
Number of extensions: 1036773
Number of successful extensions: 5565
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5438
Number of HSP's gapped (non-prelim): 117
length of query: 636
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 615
effective length of database: 2,791,206,460
effective search space: 1716591972900
effective search space used: 1716591972900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)