BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU161553.1|AU161553 AU161553 Rice shoot Oryza sativa (ja... 218 1e-054
gb|AF527712.1|AF527712 AF527712 Oryza sativa (japonica cult... 218 1e-054
dbj|AK072074.1| Oryza sativa (japonica cultivar-group) cDNA... 218 1e-054
dbj|AK098923.1| Oryza sativa (japonica cultivar-group) cDNA... 218 1e-054
dbj|AK100546.1| Oryza sativa (japonica cultivar-group) cDNA... 218 1e-054
dbj|AK119193.1| Oryza sativa (japonica cultivar-group) cDNA... 218 1e-054
gb|AU312022.1|AU312022 AU312022 Oryza sativa pistil cDNA Or... 216 5e-054
gb|CB663129.1|CB663129 OSJNEd07M04.f OSJNEd Oryza sativa (j... 212 8e-053
gb|CB674045.1|CB674045 OSJNEe08O14.f OSJNEe Oryza sativa (j... 208 1e-051
gb|D40907.1|D40907 RICS3092A Rice shoot Oryza sativa (japon... 206 5e-051
gb|AU312023.1|AU312023 AU312023 Oryza sativa pistil cDNA Or... 204 2e-050
gb|C72578.1|C72578 C72578 Rice panicle at flowering stage O... 202 8e-050
gb|CB646527.1|CB646527 OSJNEb09B04.f OSJNEb Oryza sativa (j... 174 2e-041
gb|CB668146.1|CB668146 OSJNEd15N18.f OSJNEd Oryza sativa (j... 163 7e-038
dbj|AG022513.1| Oryza sativa (japonica cultivar-group) DNA,... 125 2e-026
dbj|AG023499.1| Oryza sativa (japonica cultivar-group) DNA,... 125 2e-026
dbj|AP004697.1| Oryza sativa (japonica cultivar-group) chro... 125 2e-026
dbj|AP004280.3| Oryza sativa (japonica cultivar-group) geno... 125 2e-026
gb|AACV01013212.1| Oryza sativa (japonica cultivar-group) c... 125 2e-026
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 125 2e-026
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 125 2e-026
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 125 2e-026
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 125 2e-026
gb|L39940.1|RICSUS2 Oryza sativa sucrose synthase 2 (Sus2) ... 125 2e-026
gb|CA999233.1|CA999233 S234P_A09 Rice cold stress germinati... 107 4e-021
gb|C72595.1|C72595 C72595 Rice panicle at flowering stage O... 94 5e-017
dbj|AK100306.1| Oryza sativa (japonica cultivar-group) cDNA... 92 2e-016
ref|NM_189807.2| Oryza sativa (japonica cultivar-group), mRNA 92 2e-016
gb|CV728526.1|CV728526 COLD--01-M03.b1 Cold treated rice le... 84 5e-014
gb|CA997874.1|CA997874 S234B1_H11 Rice cold stress germinat... 66 1e-008
dbj|AG211644.1| Oryza sativa (japonica cultivar-group) DNA,... 62 2e-007
dbj|AP004308.3| Oryza sativa (japonica cultivar-group) geno... 58 3e-006
dbj|AP004988.3| Oryza sativa (japonica cultivar-group) geno... 58 3e-006
gb|AACV01016794.1| Oryza sativa (japonica cultivar-group) c... 58 3e-006
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 58 3e-006
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 58 3e-006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 58 3e-006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 58 3e-006
gb|AQ860628.1|AQ860628 nbeb0015O14r CUGI Rice BAC Library (... 52 2e-004
dbj|AG208820.1| Oryza sativa (japonica cultivar-group) DNA,... 52 2e-004
dbj|AG210971.1| Oryza sativa (japonica cultivar-group) DNA,... 52 2e-004
dbj|AG213987.1| Oryza sativa (japonica cultivar-group) DNA,... 52 2e-004
gb|L03366.1|RICRSS3 Oryza sativa sucrose synthase 3 (RSs3) ... 52 2e-004
gb|AACV01006837.1| Oryza sativa (japonica cultivar-group) c... 46 0.011
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 46 0.011
gb|AC084380.9| Oryza sativa chromosome 3 BAC OSJNBa0090P23 ... 46 0.011
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.011
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.011
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.011
emb|X59046.1|ORRSS2 O.sativa RSs2 gene for sucrose-UDP gluc... 46 0.011
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.011
gb|D39447.1|D39447 RICS0776A Rice shoot Oryza sativa (japon... 42 0.17
gb|D46582.1|D46582 RICS11346A Rice green shoot Oryza sativa... 42 0.17
gb|C25051.1|C25051 C25051 Rice shoot Oryza sativa (japonica... 42 0.17
gb|AU166639.1|AU166639 AU166639 Rice callus (2001) Oryza sa... 42 0.17
gb|CA758842.1|CA758842 BR030035000_PLATE_E05_37_037.ab1 OA ... 42 0.17
gb|CB659695.1|CB659695 OSJNEc16O08.f OSJNEc Oryza sativa (j... 42 0.17
gb|CB677912.1|CB677912 OSJNEe15F18.f OSJNEe Oryza sativa (j... 42 0.17
dbj|AK100334.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.17
ref|NM_184941.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.17
>gb|AU161553.1|AU161553 AU161553 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0645, mRNA sequence
Length = 410
Score = 218 bits (110), Expect = 1e-054
Identities = 249/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 71 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 130
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 131 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 190
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 191 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 250
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || ||||| || ||||||||||| ||||||
Sbjct: 251 aaccttgttgccactctgctggctcacaaattaggagttacccagtgtaccattgctcat 310
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 311 gccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccag 370
Query: 319 t 319
|
Sbjct: 371 t 371
>gb|AF527712.1|AF527712 AF527712 Oryza sativa (japonica cultivar-group) library (Chu ZQ)
Oryza sativa (japonica cultivar-group) cDNA clone MBR91
similar to sucrose synthase 1, mRNA sequence
Length = 721
Score = 218 bits (110), Expect = 1e-054
Identities = 249/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 67 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 126
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 127 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 186
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 187 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 246
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || ||||| || ||||||||||| ||||||
Sbjct: 247 aaccttgttgccactctgctggctcacaaattaggagttacccagtgtaccattgctcat 306
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 307 gccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccag 366
Query: 319 t 319
|
Sbjct: 367 t 367
>dbj|AK072074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D04, full
insert sequence
Length = 2781
Score = 218 bits (110), Expect = 1e-054
Identities = 249/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 1147 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 1206
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 1207 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 1266
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 1267 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 1326
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || ||||| || ||||||||||| ||||||
Sbjct: 1327 aaccttgttgccactctgctggctcacaaattaggagttacccagtgtaccattgctcat 1386
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 1387 gccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccag 1446
Query: 319 t 319
|
Sbjct: 1447 t 1447
>dbj|AK098923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P14, full
insert sequence
Length = 2702
Score = 218 bits (110), Expect = 1e-054
Identities = 249/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 1110 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 1169
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 1170 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 1229
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 1230 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 1289
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || ||||| || ||||||||||| ||||||
Sbjct: 1290 aaccttgttgccactctgctggctcacaaattaggagttacccagtgtaccattgctcat 1349
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 1350 gccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccag 1409
Query: 319 t 319
|
Sbjct: 1410 t 1410
>dbj|AK100546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102M20, full
insert sequence
Length = 3389
Score = 218 bits (110), Expect = 1e-054
Identities = 249/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 1841 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 1900
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 1901 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 1960
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 1961 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 2020
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || ||||| || ||||||||||| ||||||
Sbjct: 2021 aaccttgttgccactctgctggctcacaaattaggagttacccagtgtaccattgctcat 2080
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 2081 gccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccag 2140
Query: 319 t 319
|
Sbjct: 2141 t 2141
>dbj|AK119193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-C01, full
insert sequence
Length = 2132
Score = 218 bits (110), Expect = 1e-054
Identities = 249/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 583 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 642
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 643 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 702
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 703 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 762
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || ||||| || ||||||||||| ||||||
Sbjct: 763 aaccttgttgccactctgctggctcacaaattaggagttacccagtgtaccattgctcat 822
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 823 gccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccag 882
Query: 319 t 319
|
Sbjct: 883 t 883
>gb|AU312022.1|AU312022 AU312022 Oryza sativa pistil cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRP1148, mRNA sequence
Length = 551
Score = 216 bits (109), Expect = 5e-054
Identities = 221/263 (84%)
Strand = Plus / Plus
Query: 57 tgagaatggcatcctccgcnannngatctctcnnnttgatnnntggccatacctggagac 116
||||||||| ||||||||| | |||||| | ||||| ||||||| |||||| ||
Sbjct: 30 tgagaatggtatcctccgcaagtggatctcccgttttgatgtctggccattcctggaaac 89
Query: 117 atacactgaggatgtttccannnaaataatgaaagaaatgcnggccaagcctgaccttat 176
|||||||||||||||| | | |||| |||| ||||||| ||||| ||||| || ||
Sbjct: 90 atacactgaggatgttgcaaacgaaattatgagggaaatgcaagccaaacctgatctcat 149
Query: 177 cattggcaactacagcgatggcaacctagtcgccactctgctcgcgcacaagttgggagt 236
||||||||| ||||| ||||| ||||| || ||||||||||| || ||||| || |||||
Sbjct: 150 cattggcaattacagtgatggaaaccttgttgccactctgctggctcacaaattaggagt 209
Query: 237 cactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatata 296
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 210 tacccagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatata 269
Query: 297 cttggacaaattcgacagccagt 319
||||||||| || ||||||||||
Sbjct: 270 cttggacaagtttgacagccagt 292
>gb|CB663129.1|CB663129 OSJNEd07M04.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07M04 5', mRNA sequence
Length = 780
Score = 212 bits (107), Expect = 8e-053
Identities = 248/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 396 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 455
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 456 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 515
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 516 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 575
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || |||| || ||||||||||| ||||||
Sbjct: 576 aaccttgttgccactctgctggctcacaaattangagttacccagtgtaccattgctcat 635
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 636 gccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccag 695
Query: 319 t 319
|
Sbjct: 696 t 696
>gb|CB674045.1|CB674045 OSJNEe08O14.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08O14 5', mRNA sequence
Length = 661
Score = 208 bits (105), Expect = 1e-051
Identities = 220/263 (83%)
Strand = Plus / Plus
Query: 57 tgagaatggcatcctccgcnannngatctctcnnnttgatnnntggccatacctggagac 116
||||||||| ||||||||| | |||||| | ||||| ||||||| |||||| ||
Sbjct: 241 tgagaatggtatcctccgcaagtggatctcccgttttgatgtctggccattcctggaaac 300
Query: 117 atacactgaggatgtttccannnaaataatgaaagaaatgcnggccaagcctgaccttat 176
|||||||||||||||| | | |||| |||| ||||||| ||||| ||||| || ||
Sbjct: 301 atacactgaggatgttgcaagcgaaattatgagggaaatgcaagccaaacctgatctcat 360
Query: 177 cattggcaactacagcgatggcaacctagtcgccactctgctcgcgcacaagttgggagt 236
||||||||| ||||| ||||| ||||| || ||||||||||| || ||||| || |||||
Sbjct: 361 cattggcaattacagtgatggaaaccttgttgccactctgctggctcacaaattaggagt 420
Query: 237 cactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatata 296
|| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 421 tacccagtgtaccattgctcatgccttggagaaaaccagataccccaactcagacatata 480
Query: 297 cttggacaaattcgacagccagt 319
||||||||| || ||||||||||
Sbjct: 481 cttggacaagtttgacagccagt 503
>gb|D40907.1|D40907 RICS3092A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 317
Score = 206 bits (104), Expect = 5e-051
Identities = 190/220 (86%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||| |||||| |||||||||||||||||| | | |||| |||| |||||||
Sbjct: 46 tggccattcctggaaacatacactgaggatgttgcaaacgaaattatgagggaaatgcaa 105
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 106 gccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgccactctgctg 165
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| ||||| || ||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 166 gctcacaaattaggagttacccagtgtaccattgctcatgccttggagaaaaccaaatac 225
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| ||||||||||||||||| || ||||||||||
Sbjct: 226 cccaactcagacatatacttggacaagtttgacagccagt 265
>gb|AU312023.1|AU312023 AU312023 Oryza sativa pistil cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRP1169, mRNA sequence
Length = 426
Score = 204 bits (103), Expect = 2e-050
Identities = 219/263 (83%)
Strand = Plus / Plus
Query: 57 tgagaatggcatcctccgcnannngatctctcnnnttgatnnntggccatacctggagac 116
||||||||| ||||||||| | |||||| | ||||| |||||| |||||| ||
Sbjct: 96 tgagaatggtatcctccgcaagtggatctcccgttttgatgtcgggccattcctggaaac 155
Query: 117 atacactgaggatgtttccannnaaataatgaaagaaatgcnggccaagcctgaccttat 176
|||||||||||||||| | | |||| |||| || |||| ||||| ||||| || ||
Sbjct: 156 atacactgaggatgttgcaaacgaaattatgaggganatgcaagccaaacctgatctcat 215
Query: 177 cattggcaactacagcgatggcaacctagtcgccactctgctcgcgcacaagttgggagt 236
||||||||| ||||| ||||| ||||| || ||||||||||| || ||||| || |||||
Sbjct: 216 cattggcaattacagtgatggaaacctngttgccactctgctggctcacaaattaggagt 275
Query: 237 cactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatata 296
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 tacccagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatata 335
Query: 297 cttggacaaattcgacagccagt 319
||||||||| || ||||||||||
Sbjct: 336 cttggacaagtttgacagccagt 358
>gb|C72578.1|C72578 C72578 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1861_1A, mRNA sequence
Length = 459
Score = 202 bits (102), Expect = 8e-050
Identities = 247/301 (82%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 101 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 160
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgaggatgtttccann 138
|||||| | ||||| ||||||| |||||| |||||||||||||||||| | |
Sbjct: 161 tggatctcccgttttgatgtctggccattcctggaaacatacactgaggatgttgcaaac 220
Query: 139 naaataatgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggc 198
|||| |||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 221 gaaattatgagggaaatgcaagccaaacctgatctcatcattggcaattacagtgatgga 280
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || ||||| || ||||| || ||||||||||| ||||||
Sbjct: 281 aaccttgttgccactctgctggctcacaaattaggagttacccagtgtaccattgctcat 340
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||||||||||||||| ||||||||||||| || || |||||||||
Sbjct: 341 gccttggagaaaaccaaataccccaactcagacatatacttggcaaagtttgacagccag 400
Query: 319 t 319
|
Sbjct: 401 t 401
>gb|CB646527.1|CB646527 OSJNEb09B04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09B04 5', mRNA sequence
Length = 773
Score = 174 bits (88), Expect = 2e-041
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 1 gccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgccactctgctg 60
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| ||||| || ||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 gctcacaaattaggagttacccagtgtaccattgctcatgccttggagaaaaccaaatac 120
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| ||||||||||||||||| || ||||||||||
Sbjct: 121 cccaactcagacatatacttggacaagtttgacagccagt 160
>gb|CB668146.1|CB668146 OSJNEd15N18.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15N18 5', mRNA sequence
Length = 824
Score = 163 bits (82), Expect = 7e-038
Identities = 136/154 (88%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
||||| || |||| |||||| ||||| ||||| ||||| || ||||||||||| || |||
Sbjct: 1 cctgatctcatcactggcaattacagtgatggaaaccttgttgccactctgctggctcac 60
Query: 226 aagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaac 285
|| || ||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 aaattaggagttacccagtgtaccattgctcatgccttggagaaaaccaaataccccaac 120
Query: 286 tcggacatatacttggacaaattcgacagccagt 319
|| ||||||||||||||||| || ||||||||||
Sbjct: 121 tcagacatatacttggacaagtttgacagccagt 154
>dbj|AG022513.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04961T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2401, genomic survey sequence
Length = 617
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 506
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 505 gacaagtttgacagccagt 487
>dbj|AG023499.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND1006_0_702_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND1006, genomic survey sequence
Length = 631
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 67 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 126
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 127 gacaagtttgacagccagt 145
>dbj|AP004697.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0492A09, ***
SEQUENCING IN PROGRESS ***
Length = 148207
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 98385 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 98444
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 98445 gacaagtttgacagccagt 98463
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 98213 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 98272
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 98273 actctgctggctcacaaattaggagt 98298
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 97997 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 98056
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 98057 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 98105
>dbj|AP004280.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0648E08
Length = 135175
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 85026 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 84967
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 84966 gacaagtttgacagccagt 84948
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 85198 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 85139
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 85138 actctgctggctcacaaattaggagt 85113
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Minus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 85414 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 85355
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 85354 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 85306
>gb|AACV01013212.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013212, whole
genome shotgun sequence
Length = 17232
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1666 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 1725
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 1726 gacaagtttgacagccagt 1744
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 1494 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 1553
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 1554 actctgctggctcacaaattaggagt 1579
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 1278 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 1337
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 1338 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 1386
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501202 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 501143
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 501142 gacaagtttgacagccagt 501124
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 501374 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 501315
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 501314 actctgctggctcacaaattaggagt 501289
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Minus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 501590 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 501531
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 501530 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 501482
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4637850 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 4637791
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 4637790 gacaagtttgacagccagt 4637772
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 4638022 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 4637963
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 4637962 actctgctggctcacaaattaggagt 4637937
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Minus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 4638238 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 4638179
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 4638178 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 4638130
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4637850 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 4637791
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 4637790 gacaagtttgacagccagt 4637772
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 4638022 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 4637963
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 4637962 actctgctggctcacaaattaggagt 4637937
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Minus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 4638238 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 4638179
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 4638178 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 4638130
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4809622 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 4809563
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 4809562 gacaagtttgacagccagt 4809544
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 4809794 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 4809735
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 4809734 actctgctggctcacaaattaggagt 4809709
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Minus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 4810010 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 4809951
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 4809950 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 4809902
>gb|L39940.1|RICSUS2 Oryza sativa sucrose synthase 2 (Sus2) gene, complete cds
Length = 8950
Score = 125 bits (63), Expect = 2e-026
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6643 cagtgtaccattgctcatgccttggagaaaaccaaataccccaactcagacatatacttg 6702
Query: 301 gacaaattcgacagccagt 319
||||| || ||||||||||
Sbjct: 6703 gacaagtttgacagccagt 6721
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 6471 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 6530
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 6531 actctgctggctcacaaattaggagt 6556
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 6255 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 6314
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 6315 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 6363
>gb|CA999233.1|CA999233 S234P_A09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 632
Score = 107 bits (54), Expect = 4e-021
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 254 ctcatgccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgaca 313
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct: 1 ctcatgccttggagaaaaccaaataccccaactcagacatatacttggacaagtttgaca 60
Query: 314 gccagt 319
||||||
Sbjct: 61 gccagt 66
>gb|C72595.1|C72595 C72595 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1890_1A, mRNA sequence
Length = 460
Score = 93.7 bits (47), Expect = 5e-017
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 261 cttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccagt 319
||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 1 cttggagaaaaccaaataccccaactcagacatatacttggacaagtttgacagccagt 59
>dbj|AK100306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078G01, full
insert sequence
Length = 2771
Score = 91.7 bits (46), Expect = 2e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 1323 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 1382
Query: 226 aagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaac 285
|||||||| |||||||| ||||| ||||| ||||| | ||||||||||| |||||||||
Sbjct: 1383 aagttgggtgtcactcattgtacaatcgcccatgcacttgagaaaaccaagtaccccaac 1442
Query: 286 tc 287
||
Sbjct: 1443 tc 1444
>ref|NM_189807.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 2771
Score = 91.7 bits (46), Expect = 2e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 1323 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 1382
Query: 226 aagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaac 285
|||||||| |||||||| ||||| ||||| ||||| | ||||||||||| |||||||||
Sbjct: 1383 aagttgggtgtcactcattgtacaatcgcccatgcacttgagaaaaccaagtaccccaac 1442
Query: 286 tc 287
||
Sbjct: 1443 tc 1444
>gb|CV728526.1|CV728526 COLD--01-M03.b1 Cold treated rice leaf lambda phage cDNA library
(COLD) Oryza sativa (japonica cultivar-group) cDNA clone
COLD--01-M03, mRNA sequence
Length = 508
Score = 83.8 bits (42), Expect = 5e-014
Identities = 78/89 (87%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 231 gggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcgga 290
|||||| || ||||||| ||| |||||||||||||| ||| | ||||||||||||| ||
Sbjct: 9 gggagttacccagtgtagcattgctcatgccttggataaacc--aataccccaactcaga 66
Query: 291 catatacttggacaaattcgacagccagt 319
||||||||||||||| || ||||||||||
Sbjct: 67 catatacttggacaagtttgacagccagt 95
>gb|CA997874.1|CA997874 S234B1_H11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 644
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 223 cacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatacccc 282
||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||| ||||||
Sbjct: 11 cacaagttgggtgtcactcattgtacaatcgcccatgcacttgagaaaaccaagtacccc 70
Query: 283 aactc 287
|||||
Sbjct: 71 aactc 75
>dbj|AG211644.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF5014_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF5014, genomic survey sequence
Length = 214
Score = 61.9 bits (31), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |||
Sbjct: 176 gaaatgcaagccaaacctgatctcatcattggcaattacagtgatggaaaccttgttgcc 117
Query: 211 actctgctcgcgcacaagttgggagt 236
|||||||| || ||||| || |||||
Sbjct: 116 actctgctggctcacaaattaggagt 91
>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0552F09
Length = 134659
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 3286 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 3345
Query: 226 aagttgggagtcactca 242
|||||||| ||||||||
Sbjct: 3346 aagttgggtgtcactca 3362
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 3456 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 3502
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1056G08
Length = 168173
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 72659 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 72718
Query: 226 aagttgggagtcactca 242
|||||||| ||||||||
Sbjct: 72719 aagttgggtgtcactca 72735
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 72829 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 72875
>gb|AACV01016794.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016794, whole
genome shotgun sequence
Length = 30800
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 15222 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 15281
Query: 226 aagttgggagtcactca 242
|||||||| ||||||||
Sbjct: 15282 aagttgggtgtcactca 15298
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 15392 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 15438
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 12992574 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 12992633
Query: 226 aagttgggagtcactca 242
|||||||| ||||||||
Sbjct: 12992634 aagttgggtgtcactca 12992650
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 12992744 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 12992790
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 10841461 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 10841520
Query: 226 aagttgggagtcactca 242
|||||||| ||||||||
Sbjct: 10841521 aagttgggtgtcactca 10841537
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 10841631 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 10841677
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 24240900 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 24240959
Query: 226 aagttgggagtcactca 242
|||||||| ||||||||
Sbjct: 24240960 aagttgggtgtcactca 24240976
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 24241070 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 24241116
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcac 225
|||||||| |||||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct: 25379569 cctgacctgatcattgggaactacagtgatggcaaccttgttgcatgtttgctggcacac 25379628
Query: 226 aagttgggagtcactca 242
|||||||| ||||||||
Sbjct: 25379629 aagttgggtgtcactca 25379645
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 25379739 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 25379785
>gb|AQ860628.1|AQ860628 nbeb0015O14r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0015O14r, DNA sequence
Length = 784
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Minus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 222 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 163
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 162 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 114
>dbj|AG208820.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE4039_0_502_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE4039, genomic survey sequence
Length = 356
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 174 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 233
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 234 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 282
>dbj|AG210971.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF2791_0_531_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF2791, genomic survey sequence
Length = 271
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 84 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 143
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 144 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 192
>dbj|AG213987.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11985T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9061, genomic survey sequence
Length = 373
Score = 52.0 bits (26), Expect = 2e-004
Identities = 85/109 (77%)
Strand = Plus / Plus
Query: 19 actgagcacacagacatcattcgcnnncccttcagaaatgagaatggcatcctccgcnan 78
||||||||||| ||||| |||| || ||||| | ||||||||| ||||||||| |
Sbjct: 191 actgagcacactgacattcttcgtgttccattcaggagtgagaatggtatcctccgcaag 250
Query: 79 nngatctctcnnnttgatnnntggccatacctggagacatacactgagg 127
|||||| | ||||| ||||||| |||||| |||||||||||||
Sbjct: 251 tggatctcccgttttgatgtctggccattcctggaaacatacactgagg 299
>gb|L03366.1|RICRSS3 Oryza sativa sucrose synthase 3 (RSs3) gene, complete cds
Length = 4586
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 166 cctgaccttatcattggcaactacagcgatggcaacct 203
|||||||| |||||||| |||||||| |||||||||||
Sbjct: 2553 cctgacctgatcattgggaactacagtgatggcaacct 2590
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
|||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct: 2723 cagtgtacaatcgcccatgcacttgagaaaaccaagtaccccaactc 2769
>gb|AACV01006837.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006837, whole
genome shotgun sequence
Length = 71731
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
||||||||||| || ||||| | ||||||||||| |||||||||||
Sbjct: 55806 cagtgtaccattgcccatgcgcttgagaaaaccaagtaccccaactc 55760
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
||||||||||| || ||||| | ||||||||||| |||||||||||
Sbjct: 2532691 cagtgtaccattgcccatgcgcttgagaaaaccaagtaccccaactc 2532645
>gb|AC084380.9| Oryza sativa chromosome 3 BAC OSJNBa0090P23 genomic sequence, complete
sequence
Length = 126163
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
||||||||||| || ||||| | ||||||||||| |||||||||||
Sbjct: 66595 cagtgtaccattgcccatgcgcttgagaaaaccaagtaccccaactc 66549
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
||||||||||| || ||||| | ||||||||||| |||||||||||
Sbjct: 2702079 cagtgtaccattgcccatgcgcttgagaaaaccaagtaccccaactc 2702033
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
||||||||||| || ||||| | ||||||||||| |||||||||||
Sbjct: 16752786 cagtgtaccattgcccatgcgcttgagaaaaccaagtaccccaactc 16752740
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
||||||||||| || ||||| | ||||||||||| |||||||||||
Sbjct: 16135949 cagtgtaccattgcccatgcgcttgagaaaaccaagtaccccaactc 16135903
>emb|X59046.1|ORRSS2 O.sativa RSs2 gene for sucrose-UDP glucosyltransferase (isozyme 2)
Length = 9225
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactc 287
||||||||||| || ||||| | ||||||||||| |||||||||||
Sbjct: 5486 cagtgtaccattgcccatgcgcttgagaaaaccaagtaccccaactc 5532
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 271,401
Number of Sequences: 438736
Number of extensions: 271401
Number of successful extensions: 4474
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4300
Number of HSP's gapped (non-prelim): 164
length of query: 319
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 299
effective length of database: 2,791,645,196
effective search space: 834701913604
effective search space used: 834701913604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)