BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA17a05.yg.2.1
(548 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA... 196 9e-048
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 182 1e-043
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 182 1e-043
gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) c... 182 1e-043
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 182 1e-043
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 182 1e-043
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 182 1e-043
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 182 1e-043
gb|CB681747.1|CB681747 OSJNEf08G03.r OSJNEf Oryza sativa (j... 161 5e-037
gb|C27582.1|C27582 C27582 Rice callus cDNA Oryza sativa (ja... 143 1e-031
dbj|AP004591.3| Oryza sativa (japonica cultivar-group) geno... 111 4e-022
gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) c... 111 4e-022
dbj|AP005250.3| Oryza sativa (japonica cultivar-group) geno... 111 4e-022
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 111 4e-022
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 111 4e-022
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 111 4e-022
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 111 4e-022
gb|AU165531.1|AU165531 AU165531 Rice panicle at flowering s... 92 4e-016
gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 ... 76 2e-011
gb|AACV01007692.1| Oryza sativa (japonica cultivar-group) c... 76 2e-011
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 76 2e-011
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 76 2e-011
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
gb|CB650947.1|CB650947 OSJNEb15L03.r OSJNEb Oryza sativa (j... 56 2e-005
gb|CB669055.1|CB669055 OSJNEe01E07.f OSJNEe Oryza sativa (j... 56 2e-005
gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 ... 54 8e-005
gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
gb|CA999061.1|CA999061 S234M_G10 Rice cold stress germinati... 52 3e-004
gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
ref|XM_469993.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.020
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 46 0.020
gb|AZ126670.1|AZ126670 OSJNBb0078N08r CUGI Rice BAC Library... 42 0.31
emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC O... 42 0.31
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 42 0.31
gb|AACV01024935.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
>dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A12, full
insert sequence
Length = 2495
Score = 196 bits (99), Expect = 9e-048
Identities = 213/251 (84%)
Strand = Plus / Minus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 2065 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 2006
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 2005 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 1946
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 1945 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 1886
Query: 462 tgctcacgtcctccatcttgaacagccgtagggagtggtttgtatgccgggatgctacgt 521
||||||| || ||||||||||||| || ||||||||| |||| ||| || ||| | | ||
Sbjct: 1885 tgctcacatcttccatcttgaacaaccttagggagtgatttgcatggcgtgatacgatgt 1826
Query: 522 ctctcgcaatg 532
|||| ||||||
Sbjct: 1825 ctcttgcaatg 1815
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 182 bits (92), Expect = 1e-043
Identities = 176/204 (86%)
Strand = Plus / Plus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 57937 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 57996
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 57997 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 58056
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 58057 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 58116
Query: 462 tgctcacgtcctccatcttgaaca 485
||||||| || |||||||||||||
Sbjct: 58117 tgctcacatcttccatcttgaaca 58140
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 182 bits (92), Expect = 1e-043
Identities = 176/204 (86%)
Strand = Plus / Minus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 2225332 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 2225273
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 2225272 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 2225213
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 2225212 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 2225153
Query: 462 tgctcacgtcctccatcttgaaca 485
||||||| || |||||||||||||
Sbjct: 2225152 tgctcacatcttccatcttgaaca 2225129
>gb|AACV01025522.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025522, whole
genome shotgun sequence
Length = 26935
Score = 182 bits (92), Expect = 1e-043
Identities = 176/204 (86%)
Strand = Plus / Plus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 20241 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 20300
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 20301 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 20360
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 20361 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 20420
Query: 462 tgctcacgtcctccatcttgaaca 485
||||||| || |||||||||||||
Sbjct: 20421 tgctcacatcttccatcttgaaca 20444
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 182 bits (92), Expect = 1e-043
Identities = 176/204 (86%)
Strand = Plus / Minus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 3074521 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 3074462
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 3074461 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 3074402
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 3074401 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 3074342
Query: 462 tgctcacgtcctccatcttgaaca 485
||||||| || |||||||||||||
Sbjct: 3074341 tgctcacatcttccatcttgaaca 3074318
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 182 bits (92), Expect = 1e-043
Identities = 176/204 (86%)
Strand = Plus / Minus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 22258167 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 22258108
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 22258107 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 22258048
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 22258047 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 22257988
Query: 462 tgctcacgtcctccatcttgaaca 485
||||||| || |||||||||||||
Sbjct: 22257987 tgctcacatcttccatcttgaaca 22257964
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 15050595 tgcacctaggcggctaggcca 15050575
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 182 bits (92), Expect = 1e-043
Identities = 176/204 (86%)
Strand = Plus / Minus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 26053734 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 26053675
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 26053674 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 26053615
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 26053614 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 26053555
Query: 462 tgctcacgtcctccatcttgaaca 485
||||||| || |||||||||||||
Sbjct: 26053554 tgctcacatcttccatcttgaaca 26053531
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 18333829 tgcacctaggcggctaggcca 18333809
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 182 bits (92), Expect = 1e-043
Identities = 176/204 (86%)
Strand = Plus / Minus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||||||||||||||| |
Sbjct: 25981910 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagcattt 25981851
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 25981850 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 25981791
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 25981790 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcgacccacatgccca 25981731
Query: 462 tgctcacgtcctccatcttgaaca 485
||||||| || |||||||||||||
Sbjct: 25981730 tgctcacatcttccatcttgaaca 25981707
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 18260150 tgcacctaggcggctaggcca 18260130
>gb|CB681747.1|CB681747 OSJNEf08G03.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08G03 3', mRNA sequence
Length = 710
Score = 161 bits (81), Expect = 5e-037
Identities = 168/197 (85%)
Strand = Plus / Plus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
||||||||||||||||||| |||| || | |||||| || | ||| ||||||||||| |
Sbjct: 514 atctgtagttacagcagtgtgctcggcctgatgacagtttgttccaaaggcacagcattt 573
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 574 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 633
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| |||| || |||||||||||||
Sbjct: 634 tccagctgtgaatgtactgaactggcgcggtggtgttgaagtcttcaacccacatgccca 693
Query: 462 tgctcacgtcctccatc 478
||||||| || ||||||
Sbjct: 694 tgctcacatcttccatc 710
>gb|C27582.1|C27582 C27582 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52276_1A, mRNA sequence
Length = 249
Score = 143 bits (72), Expect = 1e-031
Identities = 185/222 (83%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 282 atctgtagttacagcagtgcgctctccccgctgacagcttctcccagaggcacagcatct 341
|||||||||||||| |||| |||| || | |||||| || | |||||| |||||||| |
Sbjct: 227 atctgtagttacagaagtgtgctcggcctgatgacagtttgttccagag-cacagcattt 169
Query: 342 gcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactggcagaacc 401
||| || |||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 168 gccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcagaacc 109
Query: 402 tccagctgtggacatactgcacgggggcgctggcgttgtagtcctccacccacatgccca 461
|||||||||| | ||||| || || ||| ||| |||| | || ||| |||||||||
Sbjct: 108 tccagctgtgaatgtactgaactggcgcggtggtgttgacancttcgaccnacatgccca 49
Query: 462 tgctcacgtcctccatcttgaacagccgtagggagtggtttg 503
||||||| || ||||||||||||| || ||||||||| ||||
Sbjct: 48 tgctcacatcttccatcttgaacaaccttagggagtgatttg 7
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0582D05
Length = 150483
Score = 111 bits (56), Expect = 4e-022
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||||
Sbjct: 141743 cagcttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagtt 141684
Query: 376 gtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggc 435
|||| ||||||| ||||||||||| ||||||||||| ||||| || || | |||
Sbjct: 141683 ctccaggcagccgtactggcagaacttccagctgtgggaatacttgacaggagacgtgga 141624
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaa 483
|||| | | ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 141623 gttgaacttctcaacccacagccccatgcttacgtcctccatcttgaa 141576
>gb|AACV01017194.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017194, whole
genome shotgun sequence
Length = 26448
Score = 111 bits (56), Expect = 4e-022
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||||
Sbjct: 6950 cagcttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagtt 6891
Query: 376 gtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggc 435
|||| ||||||| ||||||||||| ||||||||||| ||||| || || | |||
Sbjct: 6890 ctccaggcagccgtactggcagaacttccagctgtgggaatacttgacaggagacgtgga 6831
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaa 483
|||| | | ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 6830 gttgaacttctcaacccacagccccatgcttacgtcctccatcttgaa 6783
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0009H02
Length = 155388
Score = 111 bits (56), Expect = 4e-022
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||||
Sbjct: 24604 cagcttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagtt 24545
Query: 376 gtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggc 435
|||| ||||||| ||||||||||| ||||||||||| ||||| || || | |||
Sbjct: 24544 ctccaggcagccgtactggcagaacttccagctgtgggaatacttgacaggagacgtgga 24485
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaa 483
|||| | | ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 24484 gttgaacttctcaacccacagccccatgcttacgtcctccatcttgaa 24437
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 111 bits (56), Expect = 4e-022
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||||
Sbjct: 1509769 cagcttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagtt 1509710
Query: 376 gtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggc 435
|||| ||||||| ||||||||||| ||||||||||| ||||| || || | |||
Sbjct: 1509709 ctccaggcagccgtactggcagaacttccagctgtgggaatacttgacaggagacgtgga 1509650
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaa 483
|||| | | ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 1509649 gttgaacttctcaacccacagccccatgcttacgtcctccatcttgaa 1509602
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 111 bits (56), Expect = 4e-022
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||||
Sbjct: 1715945 cagcttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagtt 1715886
Query: 376 gtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggc 435
|||| ||||||| ||||||||||| ||||||||||| ||||| || || | |||
Sbjct: 1715885 ctccaggcagccgtactggcagaacttccagctgtgggaatacttgacaggagacgtgga 1715826
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaa 483
|||| | | ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 1715825 gttgaacttctcaacccacagccccatgcttacgtcctccatcttgaa 1715778
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 111 bits (56), Expect = 4e-022
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||||
Sbjct: 1715945 cagcttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagtt 1715886
Query: 376 gtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggc 435
|||| ||||||| ||||||||||| ||||||||||| ||||| || || | |||
Sbjct: 1715885 ctccaggcagccgtactggcagaacttccagctgtgggaatacttgacaggagacgtgga 1715826
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaa 483
|||| | | ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 1715825 gttgaacttctcaacccacagccccatgcttacgtcctccatcttgaa 1715778
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 111 bits (56), Expect = 4e-022
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||||
Sbjct: 1742243 cagcttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagtt 1742184
Query: 376 gtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggc 435
|||| ||||||| ||||||||||| ||||||||||| ||||| || || | |||
Sbjct: 1742183 ctccaggcagccgtactggcagaacttccagctgtgggaatacttgacaggagacgtgga 1742124
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaa 483
|||| | | ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 1742123 gttgaacttctcaacccacagccccatgcttacgtcctccatcttgaa 1742076
>gb|AU165531.1|AU165531 AU165531 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2183, mRNA sequence
Length = 712
Score = 91.7 bits (46), Expect = 4e-016
Identities = 86/98 (87%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 316 cagcttctcccagagg-cacagcatctgcctgggggactggtagtgcgccgtgaagtagt 374
|||||| ||||||||| |||||||| ||||| || |||||||| ||||||||| | ||||
Sbjct: 121 cagcttgtcccagagggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagt 62
Query: 375 tgtccacgcagccgaactggcagaacctccagctgtgg 412
| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 61 tctccaggcagccgtactggcagaacttccagctgtgg 24
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete
sequence
Length = 138345
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||| ||||| |||||||| || |||||||||||||| |||| |||||
Sbjct: 124361 cagcttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtc 124420
Query: 376 gtccacgcagccgaactggcagaacc 401
||| ||||||||||||||||||||||
Sbjct: 124421 gtcgacgcagccgaactggcagaacc 124446
Score = 73.8 bits (37), Expect = 9e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 124495 ccacccacatgcccatgctcacatcctccatcttgaacagc 124535
>gb|AACV01007692.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007692, whole
genome shotgun sequence
Length = 30512
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||| ||||| |||||||| || |||||||||||||| |||| |||||
Sbjct: 25548 cagcttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtc 25489
Query: 376 gtccacgcagccgaactggcagaacc 401
||| ||||||||||||||||||||||
Sbjct: 25488 gtcgacgcagccgaactggcagaacc 25463
Score = 73.8 bits (37), Expect = 9e-011
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 25414 ccacccacatgcccatgctcacatcctccatcttgaacagc 25374
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||| ||||| |||||||| || |||||||||||||| |||| |||||
Sbjct: 725874 cagcttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtc 725933
Query: 376 gtccacgcagccgaactggcagaacc 401
||| ||||||||||||||||||||||
Sbjct: 725934 gtcgacgcagccgaactggcagaacc 725959
Score = 73.8 bits (37), Expect = 9e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 726008 ccacccacatgcccatgctcacatcctccatcttgaacagc 726048
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||| ||||| |||||||| || |||||||||||||| |||| |||||
Sbjct: 1173914 cagcttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtc 1173973
Query: 376 gtccacgcagccgaactggcagaacc 401
||| ||||||||||||||||||||||
Sbjct: 1173974 gtcgacgcagccgaactggcagaacc 1173999
Score = 73.8 bits (37), Expect = 9e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1174048 ccacccacatgcccatgctcacatcctccatcttgaacagc 1174088
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||||||||||||||| || |||||||||||
Sbjct: 6965870 acccacatgcccatgctcacatcttccatcttgaa 6965904
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 6943968 acccacattcccatactcacgtcttccatcttgaa 6944002
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||| ||||| |||||||| || |||||||||||||| |||| |||||
Sbjct: 28440077 cagcttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtc 28440136
Query: 376 gtccacgcagccgaactggcagaacc 401
||| ||||||||||||||||||||||
Sbjct: 28440137 gtcgacgcagccgaactggcagaacc 28440162
Score = 73.8 bits (37), Expect = 9e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 28440211 ccacccacatgcccatgctcacatcctccatcttgaacagc 28440251
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||||||||||||||| || |||||||||||
Sbjct: 34232033 acccacatgcccatgctcacatcttccatcttgaa 34232067
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 34210131 acccacattcccatactcacgtcttccatcttgaa 34210165
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||| ||||| |||||||| || |||||||||||||| |||| |||||
Sbjct: 27515477 cagcttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtc 27515536
Query: 376 gtccacgcagccgaactggcagaacc 401
||| ||||||||||||||||||||||
Sbjct: 27515537 gtcgacgcagccgaactggcagaacc 27515562
Score = 73.8 bits (37), Expect = 9e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 27515611 ccacccacatgcccatgctcacatcctccatcttgaacagc 27515651
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||||||||||||||| || |||||||||||
Sbjct: 33333803 acccacatgcccatgctcacatcttccatcttgaa 33333837
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 33312615 acccacattcccatactcacgtcttccatcttgaa 33312649
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagtt 375
|||||| ||||| ||||| |||||||| || |||||||||||||| |||| |||||
Sbjct: 27424154 cagcttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtc 27424213
Query: 376 gtccacgcagccgaactggcagaacc 401
||| ||||||||||||||||||||||
Sbjct: 27424214 gtcgacgcagccgaactggcagaacc 27424239
Score = 73.8 bits (37), Expect = 9e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 27424288 ccacccacatgcccatgctcacatcctccatcttgaacagc 27424328
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||||||||||||||| || |||||||||||
Sbjct: 33243293 acccacatgcccatgctcacatcttccatcttgaa 33243327
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 33222105 acccacattcccatactcacgtcttccatcttgaa 33222139
>gb|CB650947.1|CB650947 OSJNEb15L03.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15L03 3', mRNA sequence
Length = 803
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacagcc 488
|||||||||||||||||||| || ||||||||||| ||||
Sbjct: 755 acccacatgcccatgctcacatcttccatcttgaagagcc 794
>gb|CB669055.1|CB669055 OSJNEe01E07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01E07 5', mRNA sequence
Length = 753
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacagcc 488
|||||||||||||||||||| || ||||||||||| ||||
Sbjct: 245 acccacatgcccatgctcacatcttccatcttgaagagcc 206
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence,
complete sequence
Length = 144487
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||||||||||||||| || |||||||||||
Sbjct: 1262 acccacatgcccatgctcacatcttccatcttgaa 1228
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 22450 acccacattcccatactcacgtcttccatcttgaa 22416
>gb|AACV01008116.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008116, whole
genome shotgun sequence
Length = 6612
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||||||||||||||| || |||||||||||
Sbjct: 1620 acccacatgcccatgctcacatcttccatcttgaa 1654
>gb|CA999061.1|CA999061 S234M_G10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 651
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 451 ccacatgcccatgctcacgtcctccatcttgaacagcc 488
|||||||||||||||||| || ||||||||||| ||||
Sbjct: 48 ccacatgcccatgctcacatcttccatcttgaagagcc 11
>gb|AACV01008115.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008115, whole
genome shotgun sequence
Length = 32704
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 12472 acccacattcccatactcacgtcttccatcttgaa 12506
>ref|XM_469993.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1956
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 1784 acccacattcccatactcacgtcttccatcttgaa 1750
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||| ||||| |||||||| |||||||||||
Sbjct: 2401489 acccacattcccatactcacgtcttccatcttgaa 2401523
>gb|AZ126670.1|AZ126670 OSJNBb0078N08r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0078N08r, DNA
sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 215 tgcacctaggcggctaggcca 235
>emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 177034
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 37165 tgcacctaggcggctaggcca 37185
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 643450 tgcacctaggcggctaggcca 643430
>gb|AACV01024935.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024935, whole
genome shotgun sequence
Length = 26658
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 13405 tgcacctaggcggctaggcca 13425
>gb|CH401280.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000117 genomic
scaffold, whole genome shotgun sequence
Length = 1521144
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 234 tgcacctaggcggctaggcca 254
|||||||||||||||||||||
Sbjct: 1048734 tgcacctaggcggctaggcca 1048714
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 580,815
Number of Sequences: 438736
Number of extensions: 580815
Number of successful extensions: 11993
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11475
Number of HSP's gapped (non-prelim): 517
length of query: 548
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 527
effective length of database: 2,791,206,460
effective search space: 1470965804420
effective search space used: 1470965804420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)