BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA13d08.yg.2.1
(511 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK058524.1| Oryza sativa (japonica cultivar-group) cDNA... 208 2e-051
dbj|AK102045.1| Oryza sativa (japonica cultivar-group) cDNA... 208 2e-051
dbj|AP005125.3| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|AACV01016558.1| Oryza sativa (japonica cultivar-group) c... 80 1e-012
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 80 1e-012
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
dbj|AK101098.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
>dbj|AK058524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H11, full
insert sequence
Length = 1522
Score = 208 bits (105), Expect = 2e-051
Identities = 339/417 (81%)
Strand = Plus / Plus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 337 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 396
Query: 111 cacaagattgagaaatcttgcaggattttcccttttcttcctcggttcttttgcattgat 170
|||||| ||| ||||| |||||| | |||||||| | ||||||||||||| ||
Sbjct: 397 cacaaggaagaggaatctaattggatttgcacttttcttaattagttcttttgcattaat 456
Query: 171 aattctggatgttgcaactaaaggacatggtgggcttggtgttttcgttggtgtatgcat 230
||| ||||| ||| ||||||||| ||||| |||||| || | ||||| |||||
Sbjct: 457 aatgctggacattggtactaaaggaaggggtggacttggtccatttatcggtgtctgcat 516
Query: 231 aattagcgccatatttgggacagctgatgctaattgtcaaggcgcactggttggcgacct 290
||| || ||| ||||||||||||||||||| | | |||||||| |||||||||||||
Sbjct: 517 aatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttggttggcgacct 576
Query: 291 ttctttaatgtgcccagagttcattcagtccttcatggcgggactagctgcatcaggggt 350
||| || |||||||| ||||| |||||||| ||| | || || | ||||||||||| ||
Sbjct: 577 ttccttcatgtgcccggagtttattcagtctttccttgctggcttggctgcatcaggagt 636
Query: 351 cctaacatcagctttgagattagttaccaaggcagcttttgagagctcaaaagatggtct 410
||||||||||| ||||||||| |||| || ||||| ||||||| |||| || |||||||
Sbjct: 637 tctaacatcagccttgagattaattacaaaagcagcatttgagaactcacaaaatggtct 696
Query: 411 tcgcattggagctatactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||| | ||||||||||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 697 tcgtaatggagctatactgttcttttcgataacatgcttcttcgagctagtgtgcct 753
>dbj|AK102045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081M13, full
insert sequence
Length = 1682
Score = 208 bits (105), Expect = 2e-051
Identities = 339/417 (81%)
Strand = Plus / Plus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 342 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 401
Query: 111 cacaagattgagaaatcttgcaggattttcccttttcttcctcggttcttttgcattgat 170
|||||| ||| ||||| |||||| | |||||||| | ||||||||||||| ||
Sbjct: 402 cacaaggaagaggaatctaattggatttgcacttttcttaattagttcttttgcattaat 461
Query: 171 aattctggatgttgcaactaaaggacatggtgggcttggtgttttcgttggtgtatgcat 230
||| ||||| ||| ||||||||| ||||| |||||| || | ||||| |||||
Sbjct: 462 aatgctggacattggtactaaaggaaggggtggacttggtccatttatcggtgtctgcat 521
Query: 231 aattagcgccatatttgggacagctgatgctaattgtcaaggcgcactggttggcgacct 290
||| || ||| ||||||||||||||||||| | | |||||||| |||||||||||||
Sbjct: 522 aatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttggttggcgacct 581
Query: 291 ttctttaatgtgcccagagttcattcagtccttcatggcgggactagctgcatcaggggt 350
||| || |||||||| ||||| |||||||| ||| | || || | ||||||||||| ||
Sbjct: 582 ttccttcatgtgcccggagtttattcagtctttccttgctggcttggctgcatcaggagt 641
Query: 351 cctaacatcagctttgagattagttaccaaggcagcttttgagagctcaaaagatggtct 410
||||||||||| ||||||||| |||| || ||||| ||||||| |||| || |||||||
Sbjct: 642 tctaacatcagccttgagattaattacaaaagcagcatttgagaactcacaaaatggtct 701
Query: 411 tcgcattggagctatactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||| | ||||||||||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 702 tcgtaatggagctatactgttcttttcgataacatgcttcttcgagctagtgtgcct 758
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0058I18
Length = 151453
Score = 79.8 bits (40), Expect = 1e-012
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
||||||||||| || ||||||||||| ||||||||| |||| || ||||| ||||||| |
Sbjct: 132608 gctgcatcaggagttctaacatcagccttgagattaattacaaaagcagcatttgagaac 132549
Query: 397 tcaaaagatggtcttcgcattggagcta 424
||| || |||||||||| | ||||||||
Sbjct: 132548 tcacaaaatggtcttcgtaatggagcta 132521
Score = 77.8 bits (39), Expect = 5e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 220 ggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgcactg 279
||||| |||||||| || ||| ||||||||||||||||||| | | |||||||| ||
Sbjct: 132832 ggtgtctgcataatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttg 132773
Query: 280 gttggcgacctttctttaatgtgcccagagttcattcag 318
|||||||||||||| || |||||||| ||||| ||||||
Sbjct: 132772 gttggcgacctttccttcatgtgcccggagtttattcag 132734
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 133079 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 133020
Query: 111 cacaag 116
||||||
Sbjct: 133019 cacaag 133014
Score = 46.1 bits (23), Expect = 0.018
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 425 tactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 132389 tactgttcttttcgataacatgcttcttcgagctagtgtgcct 132347
>gb|AACV01016558.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016558, whole
genome shotgun sequence
Length = 19815
Score = 79.8 bits (40), Expect = 1e-012
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
||||||||||| || ||||||||||| ||||||||| |||| || ||||| ||||||| |
Sbjct: 4609 gctgcatcaggagttctaacatcagccttgagattaattacaaaagcagcatttgagaac 4550
Query: 397 tcaaaagatggtcttcgcattggagcta 424
||| || |||||||||| | ||||||||
Sbjct: 4549 tcacaaaatggtcttcgtaatggagcta 4522
Score = 77.8 bits (39), Expect = 5e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 220 ggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgcactg 279
||||| |||||||| || ||| ||||||||||||||||||| | | |||||||| ||
Sbjct: 4833 ggtgtctgcataatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttg 4774
Query: 280 gttggcgacctttctttaatgtgcccagagttcattcag 318
|||||||||||||| || |||||||| ||||| ||||||
Sbjct: 4773 gttggcgacctttccttcatgtgcccggagtttattcag 4735
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 5080 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 5021
Query: 111 cacaag 116
||||||
Sbjct: 5020 cacaag 5015
Score = 46.1 bits (23), Expect = 0.018
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 425 tactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 4390 tactgttcttttcgataacatgcttcttcgagctagtgtgcct 4348
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 79.8 bits (40), Expect = 1e-012
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
||||||||||| || ||||||||||| ||||||||| |||| || ||||| ||||||| |
Sbjct: 9791957 gctgcatcaggagttctaacatcagccttgagattaattacaaaagcagcatttgagaac 9791898
Query: 397 tcaaaagatggtcttcgcattggagcta 424
||| || |||||||||| | ||||||||
Sbjct: 9791897 tcacaaaatggtcttcgtaatggagcta 9791870
Score = 77.8 bits (39), Expect = 5e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 220 ggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgcactg 279
||||| |||||||| || ||| ||||||||||||||||||| | | |||||||| ||
Sbjct: 9792181 ggtgtctgcataatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttg 9792122
Query: 280 gttggcgacctttctttaatgtgcccagagttcattcag 318
|||||||||||||| || |||||||| ||||| ||||||
Sbjct: 9792121 gttggcgacctttccttcatgtgcccggagtttattcag 9792083
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 9792428 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 9792369
Query: 111 cacaag 116
||||||
Sbjct: 9792368 cacaag 9792363
Score = 46.1 bits (23), Expect = 0.018
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 425 tactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 9791738 tactgttcttttcgataacatgcttcttcgagctagtgtgcct 9791696
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 79.8 bits (40), Expect = 1e-012
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
||||||||||| || ||||||||||| ||||||||| |||| || ||||| ||||||| |
Sbjct: 7611923 gctgcatcaggagttctaacatcagccttgagattaattacaaaagcagcatttgagaac 7611864
Query: 397 tcaaaagatggtcttcgcattggagcta 424
||| || |||||||||| | ||||||||
Sbjct: 7611863 tcacaaaatggtcttcgtaatggagcta 7611836
Score = 77.8 bits (39), Expect = 5e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 220 ggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgcactg 279
||||| |||||||| || ||| ||||||||||||||||||| | | |||||||| ||
Sbjct: 7612147 ggtgtctgcataatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttg 7612088
Query: 280 gttggcgacctttctttaatgtgcccagagttcattcag 318
|||||||||||||| || |||||||| ||||| ||||||
Sbjct: 7612087 gttggcgacctttccttcatgtgcccggagtttattcag 7612049
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 7612394 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 7612335
Query: 111 cacaag 116
||||||
Sbjct: 7612334 cacaag 7612329
Score = 46.1 bits (23), Expect = 0.018
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 425 tactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 7611704 tactgttcttttcgataacatgcttcttcgagctagtgtgcct 7611662
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 79.8 bits (40), Expect = 1e-012
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
||||||||||| || ||||||||||| ||||||||| |||| || ||||| ||||||| |
Sbjct: 21011362 gctgcatcaggagttctaacatcagccttgagattaattacaaaagcagcatttgagaac 21011303
Query: 397 tcaaaagatggtcttcgcattggagcta 424
||| || |||||||||| | ||||||||
Sbjct: 21011302 tcacaaaatggtcttcgtaatggagcta 21011275
Score = 77.8 bits (39), Expect = 5e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 220 ggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgcactg 279
||||| |||||||| || ||| ||||||||||||||||||| | | |||||||| ||
Sbjct: 21011586 ggtgtctgcataatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttg 21011527
Query: 280 gttggcgacctttctttaatgtgcccagagttcattcag 318
|||||||||||||| || |||||||| ||||| ||||||
Sbjct: 21011526 gttggcgacctttccttcatgtgcccggagtttattcag 21011488
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 21011833 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 21011774
Query: 111 cacaag 116
||||||
Sbjct: 21011773 cacaag 21011768
Score = 46.1 bits (23), Expect = 0.018
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 425 tactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 21011143 tactgttcttttcgataacatgcttcttcgagctagtgtgcct 21011101
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 79.8 bits (40), Expect = 1e-012
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 337 gctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagc 396
||||||||||| || ||||||||||| ||||||||| |||| || ||||| ||||||| |
Sbjct: 22178952 gctgcatcaggagttctaacatcagccttgagattaattacaaaagcagcatttgagaac 22178893
Query: 397 tcaaaagatggtcttcgcattggagcta 424
||| || |||||||||| | ||||||||
Sbjct: 22178892 tcacaaaatggtcttcgtaatggagcta 22178865
Score = 77.8 bits (39), Expect = 5e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 220 ggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgcactg 279
||||| |||||||| || ||| ||||||||||||||||||| | | |||||||| ||
Sbjct: 22179176 ggtgtctgcataatcagtgccttatttgggacagctgatgccagtgttcaaggcggtttg 22179117
Query: 280 gttggcgacctttctttaatgtgcccagagttcattcag 318
|||||||||||||| || |||||||| ||||| ||||||
Sbjct: 22179116 gttggcgacctttccttcatgtgcccggagtttattcag 22179078
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 51 ttaccagccttttgcctttggaataaccctcatcatgacatattatgaagcaaagatgaa 110
|||||| ||||||||||| ||||||||| |||| ||||||| ||||||||||| | ||
Sbjct: 22179423 ttaccaaccttttgccttcggaataacctgcatcctgacataccatgaagcaaagctcaa 22179364
Query: 111 cacaag 116
||||||
Sbjct: 22179363 cacaag 22179358
Score = 46.1 bits (23), Expect = 0.018
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 425 tactgttcttttcaatcacatgcctgttcgagctggtgtgcct 467
||||||||||||| || |||||| | |||||||| ||||||||
Sbjct: 22178733 tactgttcttttcgataacatgcttcttcgagctagtgtgcct 22178691
>dbj|AK101098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024P16, full
insert sequence
Length = 2496
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 298 atgtgcccagagttcattcagtccttcatggcgggactagctgcatcagg 347
||||||||||| || || ||||||||| | || |||||||||||||||||
Sbjct: 1433 atgtgcccagaatttatccagtccttctttgctggactagctgcatcagg 1482
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 730,502
Number of Sequences: 438736
Number of extensions: 730502
Number of successful extensions: 16173
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15921
Number of HSP's gapped (non-prelim): 250
length of query: 511
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 490
effective length of database: 2,791,206,460
effective search space: 1367691165400
effective search space used: 1367691165400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)