BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064G21F020918.3.1
(705 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB644534.1|CB644534 OSJNEb05M17.f OSJNEb Oryza sativa (j... 157 1e-035
dbj|AK066563.1| Oryza sativa (japonica cultivar-group) cDNA... 157 1e-035
gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbar... 76 3e-011
gb|AACV01006176.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 76 3e-011
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
>gb|CB644534.1|CB644534 OSJNEb05M17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05M17 5', mRNA sequence
Length = 805
Score = 157 bits (79), Expect = 1e-035
Identities = 209/257 (81%)
Strand = Plus / Plus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaat 500
|||||||| || || || || ||||||||||||||||||||||| || || | |||||||
Sbjct: 454 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatcatcggcgacacagaat 513
Query: 501 gagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggca 560
|| | ||||||||| |||| || |||||||| || |||||||| || ||||||
Sbjct: 514 gaacagagtacacccactaatcctcctactgcatatccggactggtctcaatttcaggca 573
Query: 561 tactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgta 620
||||||||| ||||||||||||||||| | |||||||||| ||| || |||
Sbjct: 574 tactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaaatgtg 633
Query: 621 gctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctccttatggg 680
||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 634 gctccaagtcctcaggggcacccatatatgtggggtccacagatgatgcctccctatgga 693
Query: 681 acaccaccaccatatgc 697
||||| || ||||||||
Sbjct: 694 acaccgccgccatatgc 710
>dbj|AK066563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071G08, full
insert sequence
Length = 2060
Score = 157 bits (79), Expect = 1e-035
Identities = 209/257 (81%)
Strand = Plus / Plus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaat 500
|||||||| || || || || ||||||||||||||||||||||| || || | |||||||
Sbjct: 485 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatcatcggcgacacagaat 544
Query: 501 gagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggca 560
|| | ||||||||| |||| || |||||||| || |||||||| || ||||||
Sbjct: 545 gaacagagtacacccactaatcctcctactgcatatccggactggtctcaatttcaggca 604
Query: 561 tactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgta 620
||||||||| ||||||||||||||||| | |||||||||| ||| || |||
Sbjct: 605 tactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaaatgtg 664
Query: 621 gctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctccttatggg 680
||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 665 gctccaagtcctcaggggcacccatatatgtggggtccacagatgatgcctccctatgga 724
Query: 681 acaccaccaccatatgc 697
||||| || ||||||||
Sbjct: 725 acaccgccgccatatgc 741
>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0060E18, from chromosome 3, complete sequence
Length = 147983
Score = 75.8 bits (38), Expect = 3e-011
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 556 aggcatactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcat 615
|||||||||||||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct: 84121 aggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaa 84062
Query: 616 ctgtagctccaacccatcaggggcacccgtatatgtggggtccacag 662
||| ||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 84061 atgtggctccaagtcctcaggggcacccatatatgtggggtccacag 84015
Score = 48.1 bits (24), Expect = 0.006
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatc 484
|||||||| || || || || |||||||||||||||||||||||
Sbjct: 84393 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatc 84350
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 660 cagatgatgcctccttatgggacaccaccaccatatgc 697
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 83738 cagatgatgcctccctatggaacaccgccgccatatgc 83701
>gb|AACV01006176.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006176, whole
genome shotgun sequence
Length = 36507
Score = 75.8 bits (38), Expect = 3e-011
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 556 aggcatactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcat 615
|||||||||||||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct: 27242 aggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaa 27183
Query: 616 ctgtagctccaacccatcaggggcacccgtatatgtggggtccacag 662
||| ||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 27182 atgtggctccaagtcctcaggggcacccatatatgtggggtccacag 27136
Score = 48.1 bits (24), Expect = 0.006
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatc 484
|||||||| || || || || |||||||||||||||||||||||
Sbjct: 27514 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatc 27471
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 660 cagatgatgcctccttatgggacaccaccaccatatgc 697
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 26859 cagatgatgcctccctatggaacaccgccgccatatgc 26822
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 75.8 bits (38), Expect = 3e-011
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 556 aggcatactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcat 615
|||||||||||||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct: 589155 aggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaa 589096
Query: 616 ctgtagctccaacccatcaggggcacccgtatatgtggggtccacag 662
||| ||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 589095 atgtggctccaagtcctcaggggcacccatatatgtggggtccacag 589049
Score = 48.1 bits (24), Expect = 0.006
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatc 484
|||||||| || || || || |||||||||||||||||||||||
Sbjct: 589427 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatc 589384
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 660 cagatgatgcctccttatgggacaccaccaccatatgc 697
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 588772 cagatgatgcctccctatggaacaccgccgccatatgc 588735
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 75.8 bits (38), Expect = 3e-011
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 556 aggcatactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcat 615
|||||||||||||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct: 7363972 aggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaa 7363913
Query: 616 ctgtagctccaacccatcaggggcacccgtatatgtggggtccacag 662
||| ||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 7363912 atgtggctccaagtcctcaggggcacccatatatgtggggtccacag 7363866
Score = 48.1 bits (24), Expect = 0.006
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatc 484
|||||||| || || || || |||||||||||||||||||||||
Sbjct: 7364244 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatc 7364201
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 660 cagatgatgcctccttatgggacaccaccaccatatgc 697
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 7363589 cagatgatgcctccctatggaacaccgccgccatatgc 7363552
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 75.8 bits (38), Expect = 3e-011
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 556 aggcatactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcat 615
|||||||||||||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct: 7556334 aggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaa 7556275
Query: 616 ctgtagctccaacccatcaggggcacccgtatatgtggggtccacag 662
||| ||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 7556274 atgtggctccaagtcctcaggggcacccatatatgtggggtccacag 7556228
Score = 48.1 bits (24), Expect = 0.006
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatc 484
|||||||| || || || || |||||||||||||||||||||||
Sbjct: 7556606 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatc 7556563
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 660 cagatgatgcctccttatgggacaccaccaccatatgc 697
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 7555951 cagatgatgcctccctatggaacaccgccgccatatgc 7555914
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 75.8 bits (38), Expect = 3e-011
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 556 aggcatactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcat 615
|||||||||||||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct: 7330760 aggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaa 7330701
Query: 616 ctgtagctccaacccatcaggggcacccgtatatgtggggtccacag 662
||| ||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 7330700 atgtggctccaagtcctcaggggcacccatatatgtggggtccacag 7330654
Score = 48.1 bits (24), Expect = 0.006
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatc 484
|||||||| || || || || |||||||||||||||||||||||
Sbjct: 7331032 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatc 7330989
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 660 cagatgatgcctccttatgggacaccaccaccatatgc 697
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 7330377 cagatgatgcctccctatggaacaccgccgccatatgc 7330340
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 75.8 bits (38), Expect = 3e-011
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 556 aggcatactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcat 615
|||||||||||||| ||||||||||||||||| | |||||||||| ||| ||
Sbjct: 7332865 aggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaa 7332806
Query: 616 ctgtagctccaacccatcaggggcacccgtatatgtggggtccacag 662
||| ||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 7332805 atgtggctccaagtcctcaggggcacccatatatgtggggtccacag 7332759
Score = 48.1 bits (24), Expect = 0.006
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 441 atgggaaagggtgatgtggctactaggtccaaatctcaaaaatc 484
|||||||| || || || || |||||||||||||||||||||||
Sbjct: 7333137 atgggaaaaggagaggtagccactaggtccaaatctcaaaaatc 7333094
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 660 cagatgatgcctccttatgggacaccaccaccatatgc 697
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 7332482 cagatgatgcctccctatggaacaccgccgccatatgc 7332445
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,182,417
Number of Sequences: 438736
Number of extensions: 1182417
Number of successful extensions: 7477
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7356
Number of HSP's gapped (non-prelim): 121
length of query: 705
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 684
effective length of database: 2,791,206,460
effective search space: 1909185218640
effective search space used: 1909185218640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)