BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS5e09.xg.2.1
(723 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK107239.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AP004382.2| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|AACV01015538.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NM_186798.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
ref|XM_477222.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
dbj|AK070948.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AACV01010148.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromoso... 52 4e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|CB653386.1|CB653386 OSJNEc04F22.r OSJNEc Oryza sativa (j... 50 0.002
dbj|AK064151.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
ref|XM_477223.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
gb|CB653385.1|CB653385 OSJNEc04F22.f OSJNEc Oryza sativa (j... 48 0.007
dbj|AK060146.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
gb|AC131374.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbar... 48 0.007
gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 ... 48 0.007
gb|AACV01007204.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01021220.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01021221.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|NM_195766.1| Oryza sativa (japonica cultivar-group) hyp... 48 0.007
ref|NM_195768.1| Oryza sativa (japonica cultivar-group) put... 48 0.007
ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chr... 48 0.007
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 48 0.007
gb|CH401251.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AK066178.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbar... 44 0.10
dbj|AP003754.5| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AACV01015542.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|AACV01020984.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
ref|NM_195166.1| Oryza sativa (japonica cultivar-group) put... 44 0.10
ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chr... 44 0.10
gb|CH401245.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|AU030928.1|AU030928 AU030928 Rice cDNA from immature lea... 42 0.41
gb|CB659047.1|CB659047 OSJNEc15K11.f OSJNEc Oryza sativa (j... 42 0.41
dbj|AP004340.5| Oryza sativa (japonica cultivar-group) geno... 42 0.41
gb|AACV01015535.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
ref|NM_186788.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.41
>dbj|AK107239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F03, full
insert sequence
Length = 1618
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 1097 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 1156
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 1157 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 1207
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 822 tcgccgtcggcccgctccacaagctc 847
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0418E08
Length = 141040
Score = 56.0 bits (28), Expect = 3e-005
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||| |||| ||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 57531 gtggagggtaggtgcaaagtggtcgattgggcaccgcagacggaggtgctagctcaccat 57590
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
|| || || || | || ||||| || |||||||| ||| | |||||||| || ||
Sbjct: 57591 gcggtgggtgggttttggacgcacaatggttggaactcgacgttagagagtatttacgaa 57650
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
||||| || ||| |||| ||||| |||||||||||
Sbjct: 57651 ggggtcccgatgttgtcaaggcctatctttggaga 57685
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 50409 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 50468
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 50469 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 50519
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 61724 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 61767
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 61350 ccttcgccgtcgggccgctgcacaagctcacc 61381
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||||||| |||||||
Sbjct: 118028 tccgtgctgtacgtgagcctcggcag 118003
Score = 44.1 bits (22), Expect = 0.10
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgct 479
||||| || ||||| |||||||| ||||||| || ||||||||||||||
Sbjct: 53697 gtggaaggtaggggtaaggtgattaagtgggccccacagcaggaggtgct 53746
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 50134 tcgccgtcggcccgctccacaagctc 50159
>gb|AACV01015538.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015538, whole
genome shotgun sequence
Length = 47958
Score = 56.0 bits (28), Expect = 3e-005
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||| |||| ||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 9795 gtggagggtaggtgcaaagtggtcgattgggcaccgcagacggaggtgctagctcaccat 9854
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
|| || || || | || ||||| || |||||||| ||| | |||||||| || ||
Sbjct: 9855 gcggtgggtgggttttggacgcacaatggttggaactcgacgttagagagtatttacgaa 9914
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
||||| || ||| |||| ||||| |||||||||||
Sbjct: 9915 ggggtcccgatgttgtcaaggcctatctttggaga 9949
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 2694 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 2753
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 2754 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 2804
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 13964 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 14007
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 13590 ccttcgccgtcgggccgctgcacaagctcacc 13621
Score = 44.1 bits (22), Expect = 0.10
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgct 479
||||| || ||||| |||||||| ||||||| || ||||||||||||||
Sbjct: 5984 gtggaaggtaggggtaaggtgattaagtgggccccacagcaggaggtgct 6033
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 2419 tcgccgtcggcccgctccacaagctc 2444
>ref|NM_186798.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1392
Score = 56.0 bits (28), Expect = 3e-005
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||| |||| ||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 1000 gtggagggtaggtgcaaagtggtcgattgggcaccgcagacggaggtgctagctcaccat 1059
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
|| || || || | || ||||| || |||||||| ||| | |||||||| || ||
Sbjct: 1060 gcggtgggtgggttttggacgcacaatggttggaactcgacgttagagagtatttacgaa 1119
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
||||| || ||| |||| ||||| |||||||||||
Sbjct: 1120 ggggtcccgatgttgtcaaggcctatctttggaga 1154
>ref|XM_477222.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1618
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 1097 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 1156
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 1157 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 1207
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 822 tcgccgtcggcccgctccacaagctc 847
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 56.0 bits (28), Expect = 3e-005
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||| |||| ||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 7897244 gtggagggtaggtgcaaagtggtcgattgggcaccgcagacggaggtgctagctcaccat 7897303
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
|| || || || | || ||||| || |||||||| ||| | |||||||| || ||
Sbjct: 7897304 gcggtgggtgggttttggacgcacaatggttggaactcgacgttagagagtatttacgaa 7897363
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
||||| || ||| |||| ||||| |||||||||||
Sbjct: 7897364 ggggtcccgatgttgtcaaggcctatctttggaga 7897398
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 7890122 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 7890181
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 7890182 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 7890232
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 7901437 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 7901480
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 7901063 ccttcgccgtcgggccgctgcacaagctcacc 7901094
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||||||| |||||||
Sbjct: 7957741 tccgtgctgtacgtgagcctcggcag 7957716
Score = 44.1 bits (22), Expect = 0.10
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgct 479
||||| || ||||| |||||||| ||||||| || ||||||||||||||
Sbjct: 7893410 gtggaaggtaggggtaaggtgattaagtgggccccacagcaggaggtgct 7893459
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 7889847 tcgccgtcggcccgctccacaagctc 7889872
Score = 42.1 bits (21), Expect = 0.41
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 215 gccaggaccgcgtctgcatggagtggctagacgcacgggcccctggatccgtgctgtacg 274
|||||||||||| |||| | |||||||||||| | | ||| || | || ||||| ||||
Sbjct: 7827890 gccaggaccgcggctgcctcgagtggctagactcccaggcgccggcgtctgtgctctacg 7827949
Query: 275 tgagcttcggcag 287
| |||||||||||
Sbjct: 7827950 tcagcttcggcag 7827962
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 56.0 bits (28), Expect = 3e-005
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||| |||| ||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 1756630 gtggagggtaggtgcaaagtggtcgattgggcaccgcagacggaggtgctagctcaccat 1756689
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
|| || || || | || ||||| || |||||||| ||| | |||||||| || ||
Sbjct: 1756690 gcggtgggtgggttttggacgcacaatggttggaactcgacgttagagagtatttacgaa 1756749
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
||||| || ||| |||| ||||| |||||||||||
Sbjct: 1756750 ggggtcccgatgttgtcaaggcctatctttggaga 1756784
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 1749529 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 1749588
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 1749589 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 1749639
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 1760799 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 1760842
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 1760425 ccttcgccgtcgggccgctgcacaagctcacc 1760456
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||||||| |||||||
Sbjct: 1815186 tccgtgctgtacgtgagcctcggcag 1815161
Score = 44.1 bits (22), Expect = 0.10
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgct 479
||||| || ||||| |||||||| ||||||| || ||||||||||||||
Sbjct: 1752819 gtggaaggtaggggtaaggtgattaagtgggccccacagcaggaggtgct 1752868
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 1749254 tcgccgtcggcccgctccacaagctc 1749279
Score = 42.1 bits (21), Expect = 0.41
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 215 gccaggaccgcgtctgcatggagtggctagacgcacgggcccctggatccgtgctgtacg 274
|||||||||||| |||| | |||||||||||| | | ||| || | || ||||| ||||
Sbjct: 1695707 gccaggaccgcggctgcctcgagtggctagactcccaggcgccggcgtctgtgctctacg 1695766
Query: 275 tgagcttcggcag 287
| |||||||||||
Sbjct: 1695767 tcagcttcggcag 1695779
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 56.0 bits (28), Expect = 3e-005
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||| |||| ||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 7810255 gtggagggtaggtgcaaagtggtcgattgggcaccgcagacggaggtgctagctcaccat 7810314
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
|| || || || | || ||||| || |||||||| ||| | |||||||| || ||
Sbjct: 7810315 gcggtgggtgggttttggacgcacaatggttggaactcgacgttagagagtatttacgaa 7810374
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
||||| || ||| |||| ||||| |||||||||||
Sbjct: 7810375 ggggtcccgatgttgtcaaggcctatctttggaga 7810409
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 7803154 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 7803213
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 7803214 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 7803264
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 7814424 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 7814467
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 7814050 ccttcgccgtcgggccgctgcacaagctcacc 7814081
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||||||| |||||||
Sbjct: 7868811 tccgtgctgtacgtgagcctcggcag 7868786
Score = 44.1 bits (22), Expect = 0.10
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgct 479
||||| || ||||| |||||||| ||||||| || ||||||||||||||
Sbjct: 7806444 gtggaaggtaggggtaaggtgattaagtgggccccacagcaggaggtgct 7806493
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 7802879 tcgccgtcggcccgctccacaagctc 7802904
Score = 42.1 bits (21), Expect = 0.41
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 215 gccaggaccgcgtctgcatggagtggctagacgcacgggcccctggatccgtgctgtacg 274
|||||||||||| |||| | |||||||||||| | | ||| || | || ||||| ||||
Sbjct: 7749332 gccaggaccgcggctgcctcgagtggctagactcccaggcgccggcgtctgtgctctacg 7749391
Query: 275 tgagcttcggcag 287
| |||||||||||
Sbjct: 7749392 tcagcttcggcag 7749404
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 56.0 bits (28), Expect = 3e-005
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||| |||| ||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 7941172 gtggagggtaggtgcaaagtggtcgattgggcaccgcagacggaggtgctagctcaccat 7941231
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagtatctatgag 549
|| || || || | || ||||| || |||||||| ||| | |||||||| || ||
Sbjct: 7941232 gcggtgggtgggttttggacgcacaatggttggaactcgacgttagagagtatttacgaa 7941291
Query: 550 ggggtgcctatgctgtcgaggcccatctttggaga 584
||||| || ||| |||| ||||| |||||||||||
Sbjct: 7941292 ggggtcccgatgttgtcaaggcctatctttggaga 7941326
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgctagctcacccg 489
|||||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||
Sbjct: 7934050 gtggagggtaggggtaaggtgattaagtgggccccacagcaagaggtgctagcacaccac 7934109
Query: 490 gcagtcggaggcnnctnnactcacaacggatggaactcnacgctggagagt 540
||||| ||||| | || ||||| || |||||||| ||||| ||||||
Sbjct: 7934110 gcagtgggagggttttggacgcacaatgggtggaactcgacgctagagagt 7934160
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 7945365 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 7945408
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 7944991 ccttcgccgtcgggccgctgcacaagctcacc 7945022
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||||||| |||||||
Sbjct: 8001669 tccgtgctgtacgtgagcctcggcag 8001644
Score = 44.1 bits (22), Expect = 0.10
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 430 gtggagggcaggggcaaggtgatcgagtgggcgccgcagcaggaggtgct 479
||||| || ||||| |||||||| ||||||| || ||||||||||||||
Sbjct: 7937338 gtggaaggtaggggtaaggtgattaagtgggccccacagcaggaggtgct 7937387
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 tcgccgtcggcccgcttcacaagctc 171
|||||||||||||||| |||||||||
Sbjct: 7933775 tcgccgtcggcccgctccacaagctc 7933800
Score = 42.1 bits (21), Expect = 0.41
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 215 gccaggaccgcgtctgcatggagtggctagacgcacgggcccctggatccgtgctgtacg 274
|||||||||||| |||| | |||||||||||| | | ||| || | || ||||| ||||
Sbjct: 7871818 gccaggaccgcggctgcctcgagtggctagactcccaggcgccggcgtctgtgctctacg 7871877
Query: 275 tgagcttcggcag 287
| |||||||||||
Sbjct: 7871878 tcagcttcggcag 7871890
>dbj|AK070948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072D17, full
insert sequence
Length = 1732
Score = 52.0 bits (26), Expect = 4e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
||||||||||||||||||||||||||
Sbjct: 920 tccgtgctgtacgtgagcttcggcag 945
>gb|AACV01010148.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010148, whole
genome shotgun sequence
Length = 95860
Score = 52.0 bits (26), Expect = 4e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
||||||||||||||||||||||||||
Sbjct: 78980 tccgtgctgtacgtgagcttcggcag 78955
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 52.0 bits (26), Expect = 4e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
||||||||||||||||||||||||||
Sbjct: 4022298 tccgtgctgtacgtgagcttcggcag 4022273
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 52.0 bits (26), Expect = 4e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
||||||||||||||||||||||||||
Sbjct: 23166397 tccgtgctgtacgtgagcttcggcag 23166372
>emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065J09,
complete sequence
Length = 117443
Score = 52.0 bits (26), Expect = 4e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
||||||||||||||||||||||||||
Sbjct: 67479 tccgtgctgtacgtgagcttcggcag 67454
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 52.0 bits (26), Expect = 4e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
||||||||||||||||||||||||||
Sbjct: 26180294 tccgtgctgtacgtgagcttcggcag 26180269
>gb|CB653386.1|CB653386 OSJNEc04F22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04F22 3', mRNA sequence
Length = 758
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 515 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 472
>dbj|AK064151.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E05, full
insert sequence
Length = 1648
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 1163 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 1206
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 789 ccttcgccgtcgggccgctgcacaagctcacc 820
>ref|XM_477223.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1648
Score = 50.1 bits (25), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 520 tggaactcnacgctggagagtatctatgagggggtgcctatgct 563
|||||||| ||||||||||| ||| |||||||||||| |||||
Sbjct: 1163 tggaactcgacgctggagagcgtctgtgagggggtgcccatgct 1206
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 789 ccttcgccgtcgggccgctgcacaagctcacc 820
>gb|CB653385.1|CB653385 OSJNEc04F22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04F22 5', mRNA sequence
Length = 810
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 711 ccttcgccgtcgggccgctgcacaagctcacc 742
>dbj|AK060146.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B01, full
insert sequence
Length = 1105
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 379 gtgggcgccgcagcagcgggtgctggctcacccggc 344
>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0008A05,
complete sequence
Length = 124366
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 121807 gtgggcgccgcagcagcgggtgctggctcacccggc 121772
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 114275 gtgggcgccgcagcagcgggtgctggctcacccggc 114240
>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0027A14, from chromosome 10, complete sequence
Length = 175667
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 5423 gtgggcgccgcagcagcgggtgctggctcacccggc 5388
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
sequence
Length = 190055
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 121289 ccttcgccgtcgggccgctgcacaagctcacc 121320
>gb|AACV01007204.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007204,
whole genome shotgun sequence
Length = 11526
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 412 ccttcgccgtcgggccgctgcacaagctcacc 381
>gb|AACV01021220.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021220, whole
genome shotgun sequence
Length = 7527
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 5855 gtgggcgccgcagcagcgggtgctggctcacccggc 5890
>gb|AACV01021221.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021221, whole
genome shotgun sequence
Length = 5603
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 2579 gtgggcgccgcagcagcgggtgctggctcacccggc 2544
>ref|NM_195766.1| Oryza sativa (japonica cultivar-group) hypothetical protein
(OSJNAb0008A05.23), mRNA
Length = 867
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 498 gtgggcgccgcagcagcgggtgctggctcacccggc 533
>ref|NM_195768.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase
(OSJNBa0027A14.2), mRNA
Length = 1479
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 1110 gtgggcgccgcagcagcgggtgctggctcacccggc 1145
>ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 1671487
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 1223079 gtgggcgccgcagcagcgggtgctggctcacccggc 1223044
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 1215547 gtgggcgccgcagcagcgggtgctggctcacccggc 1215512
>ref|NT_107174.1| Oryza sativa (japonica cultivar-group)
Length = 4376475
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 2016482 ccttcgccgtcgggccgctgcacaagctcacc 2016513
>gb|CH401251.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000088
genomic scaffold, whole genome shotgun sequence
Length = 1117668
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 995149 gtgggcgccgcagcagcgggtgctggctcacccggc 995114
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 985716 gtgggcgccgcagcagcgggtgctggctcacccggc 985681
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 7944819 ccttcgccgtcgggccgctgcacaagctcacc 7944850
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 8248045 gtgggcgccgcagcagcgggtgctggctcacccggc 8248010
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 8238612 gtgggcgccgcagcagcgggtgctggctcacccggc 8238577
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 5069679 tccgtgctgtacgtcagcttcggcag 5069704
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 21995526 ccttcgccgtcgggccgctgcacaagctcacc 21995557
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 21421407 ccttcgccgtcgggccgctgcacaagctcacc 21421438
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 8917200 gtgggcgccgcagcagcgggtgctggctcacccggc 8917165
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 8909668 gtgggcgccgcagcagcgggtgctggctcacccggc 8909633
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 5064151 tccgtgctgtacgtcagcttcggcag 5064176
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 143 ccttcgccgtcggcccgcttcacaagctcacc 174
||||||||||||| ||||| ||||||||||||
Sbjct: 21428378 ccttcgccgtcgggccgctgcacaagctcacc 21428409
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 8922339 gtgggcgccgcagcagcgggtgctggctcacccggc 8922304
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 456 gtgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||||||| |||||| |||||||||||
Sbjct: 8914807 gtgggcgccgcagcagcgggtgctggctcacccggc 8914772
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 5064938 tccgtgctgtacgtcagcttcggcag 5064963
>dbj|AK066178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058P11, full
insert sequence
Length = 1717
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 879 tccgtgctgtacgtcagcttcggcag 904
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0047G15, from chromosome 10, complete sequence
Length = 166474
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 69452 tccgtgctgtacgtcagcttcggcag 69477
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1341_A08
Length = 128955
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||||||| |||||||
Sbjct: 39866 tccgtgctgtacgtgagcctcggcag 39841
>gb|AACV01015542.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015542, whole
genome shotgun sequence
Length = 7352
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||||||| |||||||
Sbjct: 6769 tccgtgctgtacgtgagcctcggcag 6744
>gb|AACV01020984.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020984, whole
genome shotgun sequence
Length = 9751
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 3507 tccgtgctgtacgtcagcttcggcag 3532
>ref|NM_195166.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase
(OSJNBa0047G15.18), mRNA
Length = 1587
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 853 tccgtgctgtacgtcagcttcggcag 878
>ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2697502
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 1060978 tccgtgctgtacgtcagcttcggcag 1061003
>gb|CH401245.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000082 genomic
scaffold, whole genome shotgun sequence
Length = 3323203
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 1801228 tccgtgctgtacgtcagcttcggcag 1801253
>gb|AU030928.1|AU030928 AU030928 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60450_2Z, mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.41
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 439 aggggcaaggtgatcgagtgggcgccgcagcaggaggtgct 479
||||| |||||||| ||||||| || ||||||||||||||
Sbjct: 188 aggggtaaggtgattaagtgggccccacagcaggaggtgct 228
>gb|CB659047.1|CB659047 OSJNEc15K11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15K11 5', mRNA sequence
Length = 776
Score = 42.1 bits (21), Expect = 0.41
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 215 gccaggaccgcgtctgcatggagtggctagacgcacgggcccctggatccgtgctgtacg 274
|||||||||||| |||| | |||||||||||| | | ||| || | || ||||| ||||
Sbjct: 422 gccaggaccgcggctgcctcgagtggctagactcccaggcgccggcgtctgtgctctacg 481
Query: 275 tgagcttcggcag 287
| |||||||||||
Sbjct: 482 tcagcttcggcag 494
>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0523A04
Length = 149049
Score = 42.1 bits (21), Expect = 0.41
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 215 gccaggaccgcgtctgcatggagtggctagacgcacgggcccctggatccgtgctgtacg 274
|||||||||||| |||| | |||||||||||| | | ||| || | || ||||| ||||
Sbjct: 120816 gccaggaccgcggctgcctcgagtggctagactcccaggcgccggcgtctgtgctctacg 120875
Query: 275 tgagcttcggcag 287
| |||||||||||
Sbjct: 120876 tcagcttcggcag 120888
>gb|AACV01015535.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015535, whole
genome shotgun sequence
Length = 39781
Score = 42.1 bits (21), Expect = 0.41
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 215 gccaggaccgcgtctgcatggagtggctagacgcacgggcccctggatccgtgctgtacg 274
|||||||||||| |||| | |||||||||||| | | ||| || | || ||||| ||||
Sbjct: 10870 gccaggaccgcggctgcctcgagtggctagactcccaggcgccggcgtctgtgctctacg 10929
Query: 275 tgagcttcggcag 287
| |||||||||||
Sbjct: 10930 tcagcttcggcag 10942
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 624,027
Number of Sequences: 438736
Number of extensions: 624027
Number of successful extensions: 4355
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4103
Number of HSP's gapped (non-prelim): 248
length of query: 723
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 702
effective length of database: 2,791,206,460
effective search space: 1959426934920
effective search space used: 1959426934920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)