BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN21e06.xg.2.1
(704 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA... 220 8e-055
dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA... 220 8e-055
gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeo... 220 8e-055
ref|NM_197030.1| Oryza sativa (japonica cultivar-group) put... 220 8e-055
gb|AY554037.1| Oryza sativa (japonica cultivar-group) clone... 137 9e-030
gb|CV152400.1|CV152400 LS11-S.SEQ Cold stressed rice cDNA l... 125 3e-026
dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA... 123 1e-025
gb|CG206831.1|CG206831 TOS0452 TAMU Rice Japonica Nipponbar... 117 8e-024
gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11... 117 8e-024
gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) c... 117 8e-024
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 117 8e-024
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 117 8e-024
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 117 8e-024
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 117 8e-024
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 117 8e-024
gb|AU181084.1|AU181084 AU181084 Rice green shoot Oryza sati... 109 2e-021
gb|CB637613.1|CB637613 OSJNEa04I17.r OSJNEa Oryza sativa (j... 74 1e-010
dbj|AK059498.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK102378.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
gb|AY425991.1| Oryza sativa (japonica cultivar-group) homeo... 72 4e-010
ref|XM_468564.1| Oryza sativa (japonica cultivar-group), p... 72 4e-010
gb|AC105733.2| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|AACV01005752.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AK060584.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK101425.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic ... 54 1e-004
gb|AACV01007440.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NT_079918.2| Oryza sativa (japonica cultivar-group) 54 1e-004
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
emb|AJ556802.1|OSA556802 Oryza sativa (japonica cultivar-gr... 46 0.026
>dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098N12, full
insert sequence
Length = 3227
Score = 220 bits (111), Expect = 8e-055
Identities = 381/471 (80%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 2401 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 2460
Query: 71 ccaaagctaccggtatcacttgggggcggatttggtcagccactcggatcaagctgggga 130
||||||||||| || || ||||||| ||| || | || || | ||| | ||||||||
Sbjct: 2461 ccaaagctaccagttccatttgggggtggagttacttaggcaggcagatgatgctgggga 2520
Query: 131 atcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgctctttcaagga 190
| |||| |||| |||| | ||||| | |||||||| | |||||||| |||||||||||
Sbjct: 2521 agcactattgaaaatgctatgggattacgaagacgctattttgtgctgttctttcaagga 2580
Query: 191 aaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactttagt 250
|||||||||||||||||| | |||| |||||||| | ||||| ||||||| || | ||
Sbjct: 2581 aaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctctcgt 2640
Query: 251 cgctctgcaagatctcacccttgacaagatctctgacgagcctggtagaaaggcactaca 310
|||||| ||||||||| | || |||||||| | ||| || | ||||| ||||| ||| |
Sbjct: 2641 cgctctccaagatctctcactggacaagatatttgatgaagccggtaggaaggccctata 2700
Query: 311 tgcggaggttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcct 370
||| | |||||| ||||||||||||| || | ||||||||| | ||| |||||| |
Sbjct: 2701 caacgagatcccgaaattgatggaacagggttacgtgtacctgcctggtggagtgtgctt 2760
Query: 371 gtctgggatgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtga 430
||| |||||||| |||||||| || | |||||||||||| || ||||| || ||||| ||
Sbjct: 2761 gtccgggatggggcgccatgtttctttcgagcaagctgtagcatggaaggtgctcggaga 2820
Query: 431 ggacggcaacgtgcactgcctcgccttctgtttcgtcaactggtccttcgt 481
||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2821 agacaacaatgtgcactgcctcgccttctgcttcgtcaactggtccttcgt 2871
>dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109G06, full
insert sequence
Length = 3000
Score = 220 bits (111), Expect = 8e-055
Identities = 381/471 (80%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 2177 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 2236
Query: 71 ccaaagctaccggtatcacttgggggcggatttggtcagccactcggatcaagctgggga 130
||||||||||| || || ||||||| ||| || | || || | ||| | ||||||||
Sbjct: 2237 ccaaagctaccagttccatttgggggtggagttacttaggcaggcagatgatgctgggga 2296
Query: 131 atcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgctctttcaagga 190
| |||| |||| |||| | ||||| | |||||||| | |||||||| |||||||||||
Sbjct: 2297 agcactattgaaaatgctatgggattacgaagacgctattttgtgctgttctttcaagga 2356
Query: 191 aaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactttagt 250
|||||||||||||||||| | |||| |||||||| | ||||| ||||||| || | ||
Sbjct: 2357 aaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctctcgt 2416
Query: 251 cgctctgcaagatctcacccttgacaagatctctgacgagcctggtagaaaggcactaca 310
|||||| ||||||||| | || |||||||| | ||| || | ||||| ||||| ||| |
Sbjct: 2417 cgctctccaagatctctcactggacaagatatttgatgaagccggtaggaaggccctata 2476
Query: 311 tgcggaggttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcct 370
||| | |||||| ||||||||||||| || | ||||||||| | ||| |||||| |
Sbjct: 2477 caacgagatcccgaaattgatggaacagggttacgtgtacctgcctggtggagtgtgctt 2536
Query: 371 gtctgggatgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtga 430
||| |||||||| |||||||| || | |||||||||||| || ||||| || ||||| ||
Sbjct: 2537 gtccgggatggggcgccatgtttctttcgagcaagctgtagcatggaaggtgctcggaga 2596
Query: 431 ggacggcaacgtgcactgcctcgccttctgtttcgtcaactggtccttcgt 481
||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2597 agacaacaatgtgcactgcctcgccttctgcttcgtcaactggtccttcgt 2647
>gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper
protein Hox9 mRNA, complete cds
Length = 3174
Score = 220 bits (111), Expect = 8e-055
Identities = 381/471 (80%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 2330 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 2389
Query: 71 ccaaagctaccggtatcacttgggggcggatttggtcagccactcggatcaagctgggga 130
||||||||||| || || ||||||| ||| || | || || | ||| | ||||||||
Sbjct: 2390 ccaaagctaccagttccatttgggggtggagttacttaggcaggcagatgatgctgggga 2449
Query: 131 atcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgctctttcaagga 190
| |||| |||| |||| | ||||| | |||||||| | |||||||| |||||||||||
Sbjct: 2450 agcactattgaaaatgctatgggattacgaagacgctattttgtgctgttctttcaagga 2509
Query: 191 aaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactttagt 250
|||||||||||||||||| | |||| |||||||| | ||||| ||||||| || | ||
Sbjct: 2510 aaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctctcgt 2569
Query: 251 cgctctgcaagatctcacccttgacaagatctctgacgagcctggtagaaaggcactaca 310
|||||| ||||||||| | || |||||||| | ||| || | ||||| ||||| ||| |
Sbjct: 2570 cgctctccaagatctctcactggacaagatatttgatgaagccggtaggaaggccctata 2629
Query: 311 tgcggaggttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcct 370
||| | |||||| ||||||||||||| || | ||||||||| | ||| |||||| |
Sbjct: 2630 caacgagatcccgaaattgatggaacagggttacgtgtacctgcctggtggagtgtgctt 2689
Query: 371 gtctgggatgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtga 430
||| |||||||| |||||||| || | |||||||||||| || ||||| || ||||| ||
Sbjct: 2690 gtccgggatggggcgccatgtttctttcgagcaagctgtagcatggaaggtgctcggaga 2749
Query: 431 ggacggcaacgtgcactgcctcgccttctgtttcgtcaactggtccttcgt 481
||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2750 agacaacaatgtgcactgcctcgccttctgcttcgtcaactggtccttcgt 2800
>ref|NM_197030.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine
zipper protein (OSJNBa0093B11.11), mRNA
Length = 2523
Score = 220 bits (111), Expect = 8e-055
Identities = 381/471 (80%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 2049 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 2108
Query: 71 ccaaagctaccggtatcacttgggggcggatttggtcagccactcggatcaagctgggga 130
||||||||||| || || ||||||| ||| || | || || | ||| | ||||||||
Sbjct: 2109 ccaaagctaccagttccatttgggggtggagttacttaggcaggcagatgatgctgggga 2168
Query: 131 atcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgctctttcaagga 190
| |||| |||| |||| | ||||| | |||||||| | |||||||| |||||||||||
Sbjct: 2169 agcactattgaaaatgctatgggattacgaagacgctattttgtgctgttctttcaagga 2228
Query: 191 aaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactttagt 250
|||||||||||||||||| | |||| |||||||| | ||||| ||||||| || | ||
Sbjct: 2229 aaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctctcgt 2288
Query: 251 cgctctgcaagatctcacccttgacaagatctctgacgagcctggtagaaaggcactaca 310
|||||| ||||||||| | || |||||||| | ||| || | ||||| ||||| ||| |
Sbjct: 2289 cgctctccaagatctctcactggacaagatatttgatgaagccggtaggaaggccctata 2348
Query: 311 tgcggaggttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcct 370
||| | |||||| ||||||||||||| || | ||||||||| | ||| |||||| |
Sbjct: 2349 caacgagatcccgaaattgatggaacagggttacgtgtacctgcctggtggagtgtgctt 2408
Query: 371 gtctgggatgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtga 430
||| |||||||| |||||||| || | |||||||||||| || ||||| || ||||| ||
Sbjct: 2409 gtccgggatggggcgccatgtttctttcgagcaagctgtagcatggaaggtgctcggaga 2468
Query: 431 ggacggcaacgtgcactgcctcgccttctgtttcgtcaactggtccttcgt 481
||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2469 agacaacaatgtgcactgcctcgccttctgcttcgtcaactggtccttcgt 2519
>gb|AY554037.1| Oryza sativa (japonica cultivar-group) clone S10307 Hox9 (hox9)
mRNA, partial cds
Length = 562
Score = 137 bits (69), Expect = 9e-030
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 321 ccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcctgtctgggatg 380
|||||| ||||||||||||| || | ||||||||| | ||| |||||| |||| ||||||
Sbjct: 37 ccgaaattgatggaacagggttacgtgtacctgcctggtggagtgtgcttgtccgggatg 96
Query: 381 ggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggcaac 440
|| |||||||| || | |||||||||||| || ||||| || ||||| || ||| |||
Sbjct: 97 gggcgccatgtttctttcgagcaagctgtagcatggaaggtgctcggagaagacaacaat 156
Query: 441 gtgcactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 157 gtgcactgcctcgccttctgcttcgtcaactggtccttcgt 197
>gb|CV152400.1|CV152400 LS11-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 637
Score = 125 bits (63), Expect = 3e-026
Identities = 218/270 (80%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 238 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 297
Query: 71 ccaaagctaccggtatcacttgggggcggatttggtcagccactcggatcaagctgggga 130
||||||||||| || || ||||||| ||| || | || || | ||| | ||||||||
Sbjct: 298 ccaaagctaccagttccatttgggggtggagttacttaggcaggcagatgatgctgggga 357
Query: 131 atcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgctctttcaagga 190
| |||| |||| |||| | ||||| | |||||||| | |||||||| |||||||||||
Sbjct: 358 agcactattgaaaatgctatgggattacgaagacgctattttgtgctgntctttcaagga 417
Query: 191 aaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactttagt 250
|||||||||||||||||| | |||| |||||||| | ||||| ||||||| || | ||
Sbjct: 418 aaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctctcgt 477
Query: 251 cgctctgcaagatctcacccttgacaagat 280
|||||| ||||||||| | || ||||||||
Sbjct: 478 cgctctccaagatctctcactggacaagat 507
>dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E12, full
insert sequence
Length = 1481
Score = 123 bits (62), Expect = 1e-025
Identities = 218/270 (80%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 589 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 648
Query: 71 ccaaagctaccggtatcacttgggggcggatttggtcagccactcggatcaagctgggga 130
||||||||||| || || ||||||| ||| || | || || | ||| | ||||||||
Sbjct: 649 ccaaagctaccagttccatttgggggtggagttacttaggcaggcagatgatgctgggga 708
Query: 131 atcacttttgacaatgttctgggaccatcaagacgctgtcttgtgctgctctttcaagga 190
| |||| |||| |||| | ||||| | |||||||| | |||||||| |||||||||||
Sbjct: 709 agcactattgaaaatgctatgggattacgaagacgctattttgtgctgttctttcaagga 768
Query: 191 aaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactttagt 250
|||||||||||||||||| | |||| |||||||| | ||||| ||||||| || | ||
Sbjct: 769 aaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctctcgt 828
Query: 251 cgctctgcaagatctcacccttgacaagat 280
|||||| ||||||||| | || ||||||||
Sbjct: 829 cgctctccaagatctctcactggacaagat 858
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 1075 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 1134
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 1135 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 1194
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 1195 caactggtccttcgt 1209
>gb|CG206831.1|CG206831 TOS0452 TAMU Rice Japonica Nipponbare BAC Library (Hind III) Oryza
sativa (japonica cultivar-group) genomic clone
TOSJNBh018O04h, DNA sequence
Length = 643
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 359 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 418
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 419 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 478
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 479 caactggtccttcgt 493
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 49 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 108
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 109 tcgtcgctctccaagatctctcactggacaagat 142
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
sequence
Length = 178692
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Minus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 97589 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 97530
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 97529 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 97470
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 97469 caactggtccttcgt 97455
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 97899 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 97840
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 97839 tcgtcgctctccaagatctctcactggacaagat 97806
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 98373 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 98314
Query: 71 ccaaagctacc 81
|||||||||||
Sbjct: 98313 ccaaagctacc 98303
>gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021807, whole
genome shotgun sequence
Length = 45064
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Minus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 28306 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 28247
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 28246 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 28187
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 28186 caactggtccttcgt 28172
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 28616 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 28557
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 28556 tcgtcgctctccaagatctctcactggacaagat 28523
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 29090 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 29031
Query: 71 ccaaagctacc 81
|||||||||||
Sbjct: 29030 ccaaagctacc 29020
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 4309473 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 4309532
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 4309533 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 4309592
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 4309593 caactggtccttcgt 4309607
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 4309163 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 4309222
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 4309223 tcgtcgctctccaagatctctcactggacaagat 4309256
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 4308689 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 4308748
Query: 71 ccaaagctacc 81
|||||||||||
Sbjct: 4308749 ccaaagctacc 4308759
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 5523114 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 5523173
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 5523174 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 5523233
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 5523234 caactggtccttcgt 5523248
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 5522804 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 5522863
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 5522864 tcgtcgctctccaagatctctcactggacaagat 5522897
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 5522330 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 5522389
Query: 71 ccaaagctacc 81
|||||||||||
Sbjct: 5522390 ccaaagctacc 5522400
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 16388908 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 16388967
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 16388968 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 16389027
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 16389028 caactggtccttcgt 16389042
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 16388598 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 16388657
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 16388658 tcgtcgctctccaagatctctcactggacaagat 16388691
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 16388124 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 16388183
Query: 71 ccaaagctacc 81
|||||||||||
Sbjct: 16388184 ccaaagctacc 16388194
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 17577042 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 17577101
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 17577102 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 17577161
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 17577162 caactggtccttcgt 17577176
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 17576732 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 17576791
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 17576792 tcgtcgctctccaagatctctcactggacaagat 17576825
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 17576258 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 17576317
Query: 71 ccaaagctacc 81
|||||||||||
Sbjct: 17576318 ccaaagctacc 17576328
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 117 bits (59), Expect = 8e-024
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 347 gtacctgccggctggggtgtgcctgtctgggatgggccgccatgtctcctacgagcaagc 406
||||||||| | ||| |||||| |||| |||||||| |||||||| || | |||||||||
Sbjct: 17586082 gtacctgcctggtggagtgtgcttgtccgggatggggcgccatgtttctttcgagcaagc 17586141
Query: 407 tgttgcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgt 466
||| || ||||| || ||||| || ||| ||| |||||||||||||||||||| |||||
Sbjct: 17586142 tgtagcatggaaggtgctcggagaagacaacaatgtgcactgcctcgccttctgcttcgt 17586201
Query: 467 caactggtccttcgt 481
|||||||||||||||
Sbjct: 17586202 caactggtccttcgt 17586216
Score = 67.9 bits (34), Expect = 7e-009
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 187 aggaaaagcctgtgtttactttcggcaaccagatgggagttgacatgttagaaacgactt 246
|||||||||||||||||||||| | |||| |||||||| | ||||| ||||||| ||
Sbjct: 17585772 aggaaaagcctgtgtttacttttgccaacgagatgggactaaacatgctagaaacatctc 17585831
Query: 247 tagtcgctctgcaagatctcacccttgacaagat 280
| |||||||| ||||||||| | || ||||||||
Sbjct: 17585832 tcgtcgctctccaagatctctcactggacaagat 17585865
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 11 tgctgggcagaagctaatttctggctcccctgaagctgctacacttgttcgctggatttg 70
||||||||||||| ||||||| |||| ||||||||| | || || | ||| ||||||||
Sbjct: 17585298 tgctgggcagaagataatttcaggcttccctgaagccccaacgctagctcgttggatttg 17585357
Query: 71 ccaaagctacc 81
|||||||||||
Sbjct: 17585358 ccaaagctacc 17585368
>gb|AU181084.1|AU181084 AU181084 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10307, mRNA sequence
Length = 346
Score = 109 bits (55), Expect = 2e-021
Identities = 136/162 (83%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 321 ccgaaactgatggaacagggctatgcgtacctgccg-gctggggtgtgcctgtctgggat 379
|||||| ||||||||||||| || | |||||| || | ||| |||||| |||| |||||
Sbjct: 72 ccgaaattgatggaacagggttacgtgtacctncctaggtggagtgtgcttgtccgggat 131
Query: 380 gggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggcaa 439
||| |||||||| || | |||||||||||| || ||||| || ||||| || ||| |||
Sbjct: 132 ggggcgccatgtttctttcgagcaagctgtagcatggaaggtgctcggagaagacaacaa 191
Query: 440 cgtgcactgcctcgccttctgtttcgtcaactggtccttcgt 481
|| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 192 tgtacactgcctcgccttctgcttcgtcaactggtccttcgt 233
>gb|CB637613.1|CB637613 OSJNEa04I17.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa04I17 3', mRNA sequence
Length = 399
Score = 73.8 bits (37), Expect = 1e-010
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 441 gtgcactgcctcgccttctgtttcgtcaactggtccttcgt 481
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 gtgcactgcctcgccttctgcttcgtcaactggtccttcgt 321
>dbj|AK059498.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H11, full
insert sequence
Length = 1573
Score = 71.9 bits (36), Expect = 4e-010
Identities = 129/160 (80%)
Strand = Plus / Plus
Query: 319 ttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcctgtctggga 378
|||| ||| ||||||| |||||| ||| |||||||| | || |||||| |||| || |
Sbjct: 1101 ttcccaaattgatggagcagggccatgtctacctgccatcaggcgtgtgcatgtcaggaa 1160
Query: 379 tgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggca 438
|||| || ||||| || | ||| || || || ||||||||||| || | ||||| |||
Sbjct: 1161 tgggtcggcatgtttctttcgatcaggccgtggcttggaaagtgcttgccgaggatagca 1220
Query: 439 acgtgcactgcctcgccttctgtttcgtcaactggtcctt 478
| || |||||||| ||||||||||||||||||||||||||
Sbjct: 1221 atgttcactgcctggccttctgtttcgtcaactggtcctt 1260
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 171 ttgtgctgctctttcaaggaaaagcctgtgtttac 205
||||||||||| ||||||||||| || ||||||||
Sbjct: 953 ttgtgctgctcattcaaggaaaaaccggtgtttac 987
>dbj|AK102378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091P14, full
insert sequence
Length = 3252
Score = 71.9 bits (36), Expect = 4e-010
Identities = 129/160 (80%)
Strand = Plus / Plus
Query: 319 ttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcctgtctggga 378
|||| ||| ||||||| |||||| ||| |||||||| | || |||||| |||| || |
Sbjct: 2764 ttcccaaattgatggagcagggccatgtctacctgccatcaggcgtgtgcatgtcaggaa 2823
Query: 379 tgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggca 438
|||| || ||||| || | ||| || || || ||||||||||| || | ||||| |||
Sbjct: 2824 tgggtcggcatgtttctttcgatcaggccgtggcttggaaagtgcttgccgaggatagca 2883
Query: 439 acgtgcactgcctcgccttctgtttcgtcaactggtcctt 478
| || |||||||| ||||||||||||||||||||||||||
Sbjct: 2884 atgttcactgcctggccttctgtttcgtcaactggtcctt 2923
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 171 ttgtgctgctctttcaaggaaaagcctgtgtttac 205
||||||||||| ||||||||||| || ||||||||
Sbjct: 2616 ttgtgctgctcattcaaggaaaaaccggtgtttac 2650
>gb|AY425991.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper
protein Hox10 mRNA, complete cds
Length = 3252
Score = 71.9 bits (36), Expect = 4e-010
Identities = 129/160 (80%)
Strand = Plus / Plus
Query: 319 ttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcctgtctggga 378
|||| ||| ||||||| |||||| ||| |||||||| | || |||||| |||| || |
Sbjct: 2764 ttcccaaattgatggagcagggccatgtctacctgccatcaggcgtgtgcatgtcaggaa 2823
Query: 379 tgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggca 438
|||| || ||||| || | ||| || || || ||||||||||| || | ||||| |||
Sbjct: 2824 tgggtcggcatgtttctttcgatcaggccgtggcttggaaagtgcttgccgaggatagca 2883
Query: 439 acgtgcactgcctcgccttctgtttcgtcaactggtcctt 478
| || |||||||| ||||||||||||||||||||||||||
Sbjct: 2884 atgttcactgcctggccttctgtttcgtcaactggtcctt 2923
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 171 ttgtgctgctctttcaaggaaaagcctgtgtttac 205
||||||||||| ||||||||||| || ||||||||
Sbjct: 2616 ttgtgctgctcattcaaggaaaaaccggtgtttac 2650
>ref|XM_468564.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2574
Score = 71.9 bits (36), Expect = 4e-010
Identities = 129/160 (80%)
Strand = Plus / Plus
Query: 319 ttccgaaactgatggaacagggctatgcgtacctgccggctggggtgtgcctgtctggga 378
|||| ||| ||||||| |||||| ||| |||||||| | || |||||| |||| || |
Sbjct: 2408 ttcccaaattgatggagcagggccatgtctacctgccatcaggcgtgtgcatgtcaggaa 2467
Query: 379 tgggccgccatgtctcctacgagcaagctgttgcttggaaagttctcggtgaggacggca 438
|||| || ||||| || | ||| || || || ||||||||||| || | ||||| |||
Sbjct: 2468 tgggtcggcatgtttctttcgatcaggccgtggcttggaaagtgcttgccgaggatagca 2527
Query: 439 acgtgcactgcctcgccttctgtttcgtcaactggtcctt 478
| || |||||||| ||||||||||||||||||||||||||
Sbjct: 2528 atgttcactgcctggccttctgtttcgtcaactggtcctt 2567
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 171 ttgtgctgctctttcaaggaaaagcctgtgtttac 205
||||||||||| ||||||||||| || ||||||||
Sbjct: 2260 ttgtgctgctcattcaaggaaaaaccggtgtttac 2294
>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0043C10, complete sequence
Length = 108688
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 411 gcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgtcaac 470
||||||||||| || | ||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 80081 gcttggaaagtgcttgccgaggatagcaatgttcactgcctggccttctgtttcgtcaac 80022
Query: 471 tggtcctt 478
||||||||
Sbjct: 80021 tggtcctt 80014
>gb|AACV01005752.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005752, whole
genome shotgun sequence
Length = 45615
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 411 gcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgtcaac 470
||||||||||| || | ||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 24769 gcttggaaagtgcttgccgaggatagcaatgttcactgcctggccttctgtttcgtcaac 24710
Query: 471 tggtcctt 478
||||||||
Sbjct: 24709 tggtcctt 24702
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 411 gcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgtcaac 470
||||||||||| || | ||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 535835 gcttggaaagtgcttgccgaggatagcaatgttcactgcctggccttctgtttcgtcaac 535894
Query: 471 tggtcctt 478
||||||||
Sbjct: 535895 tggtcctt 535902
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 411 gcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgtcaac 470
||||||||||| || | ||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 549663 gcttggaaagtgcttgccgaggatagcaatgttcactgcctggccttctgtttcgtcaac 549722
Query: 471 tggtcctt 478
||||||||
Sbjct: 549723 tggtcctt 549730
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 411 gcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgtcaac 470
||||||||||| || | ||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 742025 gcttggaaagtgcttgccgaggatagcaatgttcactgcctggccttctgtttcgtcaac 742084
Query: 471 tggtcctt 478
||||||||
Sbjct: 742085 tggtcctt 742092
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 25019427 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 25019385
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 411 gcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgtcaac 470
||||||||||| || | ||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 535835 gcttggaaagtgcttgccgaggatagcaatgttcactgcctggccttctgtttcgtcaac 535894
Query: 471 tggtcctt 478
||||||||
Sbjct: 535895 tggtcctt 535902
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 24456965 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 24456923
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 411 gcttggaaagttctcggtgaggacggcaacgtgcactgcctcgccttctgtttcgtcaac 470
||||||||||| || | ||||| |||| || |||||||| ||||||||||||||||||
Sbjct: 535837 gcttggaaagtgcttgccgaggatagcaatgttcactgcctggccttctgtttcgtcaac 535896
Query: 471 tggtcctt 478
||||||||
Sbjct: 535897 tggtcctt 535904
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 24539496 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 24539454
>dbj|AK060584.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H08, full
insert sequence
Length = 1875
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 1669 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 1711
>dbj|AK101425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038E17, full
insert sequence
Length = 1165
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 984 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 1026
>dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124M18, full
insert sequence
Length = 3082
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 2883 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 2925
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence
Length = 175704
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 96364 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 96406
>gb|AACV01007440.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007440, whole
genome shotgun sequence
Length = 11259
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 5089 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 5131
>ref|NT_079918.2| Oryza sativa (japonica cultivar-group)
Length = 553008
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 456645 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 456603
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 54.0 bits (27), Expect = 1e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 443 gcactgcctcgccttctgtttcgtcaactggtccttcgtctga 485
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 10968720 gcactgcctcgccttcatgttcgtcaactggtcattcgtctga 10968678
>emb|AJ556802.1|OSA556802 Oryza sativa (japonica cultivar-group) partial mRNA for HD-ZIP
protein (hb1 gene)
Length = 1354
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 171 ttgtgctgctctttcaaggaaaagcctgtgtttac 205
||||||||||| ||||||||||| || ||||||||
Sbjct: 1087 ttgtgctgctcattcaaggaaaaaccggtgtttac 1121
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 758,902
Number of Sequences: 438736
Number of extensions: 758902
Number of successful extensions: 2787
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2598
Number of HSP's gapped (non-prelim): 175
length of query: 704
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 683
effective length of database: 2,791,206,460
effective search space: 1906394012180
effective search space used: 1906394012180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)