BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 84 1e-013
gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (ja... 66 2e-008
gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (jap... 66 2e-008
gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (j... 66 2e-008
gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressin... 66 2e-008
gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloar... 66 2e-008
dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA... 66 2e-008
dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA... 66 2e-008
ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-008
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 50 0.001
gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 83.8 bits (42), Expect = 1e-013
Identities = 108/130 (83%)
Strand = Plus / Plus
Query: 285 ctcaagaagggtatgaaggttctggacgtgggatgtggaattgggggacctttaatagaa 344
||||||||||| |||||||| || |||||||| ||||| ||||| ||||| || | |||
Sbjct: 238 ctcaagaagggcatgaaggtcctagacgtggggtgtggcattggaggacccttgagagag 297
Query: 345 attgccagattcagctcaacttcaataactggattgaccaacaatgactaccatgtctca 404
|||||||||||||||||| | || | |||||| ||| |||||||| ||||| | |||
Sbjct: 298 attgccagattcagctcagcatcggtgactggactgaacaacaatgcgtaccagatatca 357
Query: 405 aggggcaagg 414
||||||||||
Sbjct: 358 aggggcaagg 367
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 109 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 161
>gb|C25986.1|C25986 C25986 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11423_1A, mRNA sequence
Length = 417
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 187 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 246
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 247 agcttggcttcagtcactggattgaacaacaatgagtacca 287
>gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3690_1A, mRNA sequence
Length = 362
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 6 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 65
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 66 agcttggcttcagtcactggattgaacaacaatgagtacca 106
>gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05J06 5', mRNA sequence
Length = 670
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 320 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 379
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 380 agcttggcttcagtcactggattgaacaacaatgagtacca 420
>gb|CF323745.1|CF323745 HDN--04-K15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-K15, mRNA sequence
Length = 619
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 442 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 501
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 502 agcttggcttcagtcactggattgaacaacaatgagtacca 542
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase
mRNA, complete cds
Length = 1629
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 481 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 540
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 541 agcttggcttcagtcactggattgaacaacaatgagtacca 581
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full
insert sequence
Length = 1526
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 407 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 466
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 467 agcttggcttcagtcactggattgaacaacaatgagtacca 507
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full
insert sequence
Length = 2883
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 1864 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 1923
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 1924 agcttggcttcagtcactggattgaacaacaatgagtacca 1964
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1525
Score = 65.9 bits (33), Expect = 2e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| ||||||| || |||||||| || ||||| ||| ||||||||||| |||
Sbjct: 407 atgaaggttttggacgtcggttgtggaataggcggaccactaagagaaattgccaaattt 466
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||| ||||| | |||||||||| ||||||||| |||||
Sbjct: 467 agcttggcttcagtcactggattgaacaacaatgagtacca 507
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||||||||| || || || | ||||||||||||||||||
Sbjct: 7947 gacgtggggtgtggaattggagggcccttgagagaaattgccagattcag 7898
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 372 actggattgaccaacaatgactaccatgtctcaaggggcaaggt 415
|||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 7794 actggattgaacaacaatgactaccagatatcaaggggccaggt 7751
>gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022880, whole
genome shotgun sequence
Length = 10770
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||||||||| || || || | ||||||||||||||||||
Sbjct: 2318 gacgtggggtgtggaattggagggcccttgagagaaattgccagattcag 2367
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 372 actggattgaccaacaatgactaccatgtctcaaggggcaaggt 415
|||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 2471 actggattgaacaacaatgactaccagatatcaaggggccaggt 2514
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||||||||| || || || | ||||||||||||||||||
Sbjct: 1964101 gacgtggggtgtggaattggagggcccttgagagaaattgccagattcag 1964052
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 372 actggattgaccaacaatgactaccatgtctcaaggggcaaggt 415
|||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 1963948 actggattgaacaacaatgactaccagatatcaaggggccaggt 1963905
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||||||||| || || || | ||||||||||||||||||
Sbjct: 9819145 gacgtggggtgtggaattggagggcccttgagagaaattgccagattcag 9819096
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 372 actggattgaccaacaatgactaccatgtctcaaggggcaaggt 415
|||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 9818992 actggattgaacaacaatgactaccagatatcaaggggccaggt 9818949
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||||||||| || || || | ||||||||||||||||||
Sbjct: 10818427 gacgtggggtgtggaattggagggcccttgagagaaattgccagattcag 10818378
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 372 actggattgaccaacaatgactaccatgtctcaaggggcaaggt 415
|||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 10818274 actggattgaacaacaatgactaccagatatcaaggggccaggt 10818231
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||||||||| || || || | ||||||||||||||||||
Sbjct: 7947 gacgtggggtgtggaattggagggcccttgagagaaattgccagattcag 7898
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 372 actggattgaccaacaatgactaccatgtctcaaggggcaaggt 415
|||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 7794 actggattgaacaacaatgactaccagatatcaaggggccaggt 7751
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||||||||| || || || | ||||||||||||||||||
Sbjct: 10897616 gacgtggggtgtggaattggagggcccttgagagaaattgccagattcag 10897567
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 372 actggattgaccaacaatgactaccatgtctcaaggggcaaggt 415
|||||||||| ||||||||||||||| | ||||||||| ||||
Sbjct: 10897463 actggattgaacaacaatgactaccagatatcaaggggccaggt 10897420
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 43188 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 43240
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||| ||||| ||||| || | ||| ||||||||||||||
Sbjct: 43563 gacgtggggtgtggcattggaggacccttgagagagattgccagattcag 43612
>gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008131, whole
genome shotgun sequence
Length = 26815
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 6824 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 6876
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||| ||||| ||||| || | ||| ||||||||||||||
Sbjct: 7199 gacgtggggtgtggcattggaggacccttgagagagattgccagattcag 7248
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 111368 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 111316
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||| ||||| ||||| || | ||| ||||||||||||||
Sbjct: 110993 gacgtggggtgtggcattggaggacccttgagagagattgccagattcag 110944
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 7170846 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 7170794
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||| ||||| ||||| || | ||| ||||||||||||||
Sbjct: 7170471 gacgtggggtgtggcattggaggacccttgagagagattgccagattcag 7170422
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 34437009 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 34436957
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||| ||||| ||||| || | ||| ||||||||||||||
Sbjct: 34436634 gacgtggggtgtggcattggaggacccttgagagagattgccagattcag 34436585
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 33545433 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 33545381
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||| ||||| ||||| || | ||| ||||||||||||||
Sbjct: 33545058 gacgtggggtgtggcattggaggacccttgagagagattgccagattcag 33545009
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 3 tatgatcttgtcactggcttctacgaatatggatggggcgactcattccattt 55
|||||||||||||| | ||||||||||| || ||||| || |||||||||||
Sbjct: 33454923 tatgatcttgtcaccagtttctacgaatacggctggggagaatcattccattt 33454871
Score = 44.1 bits (22), Expect = 0.083
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 309 gacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||| ||||| ||||| ||||| || | ||| ||||||||||||||
Sbjct: 33454548 gacgtggggtgtggcattggaggacccttgagagagattgccagattcag 33454499
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 630,900
Number of Sequences: 438736
Number of extensions: 630900
Number of successful extensions: 10584
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10328
Number of HSP's gapped (non-prelim): 256
length of query: 581
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 560
effective length of database: 2,791,206,460
effective search space: 1563075617600
effective search space used: 1563075617600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)