BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ495784.1|OSA495784 Oryza sativa (japonica cultivar-gr... 412 e-112
gb|CB656567.1|CB656567 OSJNEc11B07.f OSJNEc Oryza sativa (j... 404 e-110
dbj|AK099636.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
dbj|AK104345.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
dbj|AK111821.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
gb|AU083547.1|AU083547 AU083547 Rice green shoot Oryza sati... 309 1e-081
dbj|AK111803.1| Oryza sativa (japonica cultivar-group) cDNA... 264 6e-068
ref|XM_462838.1| Oryza sativa (japonica cultivar-group), p... 264 6e-068
emb|AJ495786.1|OSA495786 Oryza sativa (japonica cultivar-gr... 256 1e-065
gb|CF276098.1|CF276098 14ETL--01-B22.b1 Rice etiolated leaf... 254 5e-065
gb|AC137621.2| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|AACV01010857.1| Oryza sativa (japonica cultivar-group) c... 212 2e-052
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 212 2e-052
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
gb|D48692.1|D48692 RICS15068A Rice green shoot Oryza sativa... 202 2e-049
gb|AQ050675.1|AQ050675 nbxb0004cA07f CUGI Rice BAC Library ... 174 4e-041
dbj|AP003018.2| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
gb|AACV01000735.1| Oryza sativa (japonica cultivar-group) c... 174 4e-041
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 174 4e-041
dbj|AP003020.2| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
gb|D48383.1|D48383 RICS14555A Rice green shoot Oryza sativa... 161 6e-037
ref|XM_470673.1| Oryza sativa (japonica cultivar-group), mRNA 139 2e-030
gb|CB643957.1|CB643957 OSJNEb04P04.f OSJNEb Oryza sativa (j... 137 9e-030
ref|NM_193128.1| Oryza sativa (japonica cultivar-group), mRNA 137 9e-030
gb|D42008.1|D42008 RICS5087A Rice shoot Oryza sativa (japon... 131 5e-028
gb|D40175.1|D40175 RICS1959A Rice shoot Oryza sativa (japon... 115 3e-023
gb|C73089.1|C73089 C73089 Rice panicle at flowering stage O... 115 3e-023
gb|AQ287492.1|AQ287492 nbxb0030K04r CUGI Rice BAC Library O... 94 1e-016
gb|AQ329740.1|AQ329740 nbxb0045L21r CUGI Rice BAC Library O... 94 1e-016
gb|AQ051267.1|AQ051267 nbxb0001cF08f CUGI Rice BAC Library ... 94 1e-016
gb|AACV01016862.1| Oryza sativa (japonica cultivar-group) c... 94 1e-016
dbj|AP004334.2| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
dbj|AP003752.3| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 94 1e-016
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 ... 84 1e-013
gb|AACV01006722.1| Oryza sativa (japonica cultivar-group) c... 84 1e-013
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 84 1e-013
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
gb|AQ688548.1|AQ688548 nbxb0077J20f CUGI Rice BAC Library O... 82 5e-013
gb|AQ255921.1|AQ255921 nbxb0014H01r CUGI Rice BAC Library O... 78 7e-012
gb|D47363.1|D47363 RICS12691A Rice green shoot Oryza sativa... 68 7e-009
dbj|AK111782.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
gb|CV720744.1|CV720744 YBH--01-L04.b1 Rice before heading y... 64 1e-007
gb|BP184381.1|BP184381 BP184381 pNS rice panicle cDNA, germ... 64 1e-007
ref|NM_191687.1| Oryza sativa (japonica cultivar-group), p... 64 1e-007
gb|C74144.1|C74144 C74144 Rice panicle shorter than 3cm Ory... 62 4e-007
gb|AU081563.1|AU081563 AU081563 Rice panicle shorter than 3... 62 4e-007
dbj|AK107483.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
dbj|AP005527.3| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
dbj|AP005619.3| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AACV01013461.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 62 4e-007
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AU082324.1|AU082324 AU082324 Rice panicle (longer than 1... 60 2e-006
gb|AU094689.1|AU094689 AU094689 Rice panicle (longer than 1... 60 2e-006
gb|AACV01001493.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|NM_193333.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 60 2e-006
dbj|AP004231.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|AQ256517.1|AQ256517 nbxb0016M14f CUGI Rice BAC Library O... 56 3e-005
gb|AQ861558.1|AQ861558 nbeb0017G17f CUGI Rice BAC Library (... 56 3e-005
gb|D47255.1|D47255 RICS12518A Rice green shoot Oryza sativa... 52 4e-004
gb|C74379.1|C74379 C74379 Rice panicle shorter than 3cm Ory... 52 4e-004
gb|AACV01002207.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 52 4e-004
dbj|AP002901.2| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP002912.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AY459343.1| Oryza sativa (japonica cultivar-group) clone... 50 0.002
gb|AACV01000256.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|AP003339.4| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|XM_462803.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|XM_550262.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein... 46 0.025
gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbar... 46 0.025
gb|AACV01006437.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
ref|NM_192221.1| Oryza sativa (japonica cultivar-group), p... 46 0.025
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 46 0.025
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|AQ160956.1|AQ160956 nbxb0006A18r CUGI Rice BAC Library O... 44 0.098
gb|AQ509965.1|AQ509965 nbxb0094H15r CUGI Rice BAC Library O... 44 0.098
gb|AQ843016.1|AQ843016 nbxb0001P18r CUGI Rice BAC Library O... 44 0.098
gb|DU133704.1|DU133704 UCDRGT2793_5.1 UCD RGT Rice Insertio... 44 0.098
dbj|AP005012.3| Oryza sativa (japonica cultivar-group) geno... 44 0.098
gb|AC118285.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|AC098833.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|AACV01002173.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01005439.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
gb|AACV01012646.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
ref|XM_467854.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.098
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 44 0.098
ref|NT_107219.1| Oryza sativa (japonica cultivar-group) 44 0.098
dbj|AP003245.4| Oryza sativa (japonica cultivar-group) geno... 44 0.098
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.098
gb|AY873246.1|AY873246 04ET3_013_I_007_019_029C07 Oryza sat... 42 0.39
gb|AU082155.1|AU082155 AU082155 Rice root Oryza sativa (jap... 42 0.39
dbj|AP004813.1| Oryza sativa (japonica cultivar-group) chro... 42 0.39
dbj|AP005070.1| Oryza sativa (japonica cultivar-group) chro... 42 0.39
dbj|AK112018.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
dbj|AK112056.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
dbj|AP006523.2| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 ... 42 0.39
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 42 0.39
dbj|AP006616.2| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AACV01004944.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01008001.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01014981.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
ref|XM_466825.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.39
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 42 0.39
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
>emb|AJ495784.1|OSA495784 Oryza sativa (japonica cultivar-group) mRNA for MYB16 protein
Length = 1925
Score = 412 bits (208), Expect = e-112
Identities = 355/407 (87%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 268 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 327
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 328 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 387
Query: 377 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 436
|||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| |||
Sbjct: 388 catggccatggctgctggagttctgttcctaaacttgcagggctccaaaggtgcggcaag 447
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 496
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 448 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 507
Query: 497 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacagangnnnntct 556
|| || ||||||||||||||||| ||||| || |||||||| |||||||| | |||
Sbjct: 508 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtg---gtct 564
Query: 557 caaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcn 616
|| |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 565 cagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattct 624
Query: 617 nncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
||||||| || ||||||||||||||||||||||||||||
Sbjct: 625 tgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 671
Score = 101 bits (51), Expect = 5e-019
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgc-ccctagcctttccttgctttccactgaaatctcctatctg 64
||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||| |
Sbjct: 2 aagaaaaggagagtagtgctccctaacctttccctgctttccactgaaatctcctatccg 61
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 62 caaccatacagttgctcaattctggtctcag 92
>gb|CB656567.1|CB656567 OSJNEc11B07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11B07 5', mRNA sequence
Length = 806
Score = 404 bits (204), Expect = e-110
Identities = 354/407 (86%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 216 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 275
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 276 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 335
Query: 377 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 436
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 336 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 395
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 496
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 396 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 455
Query: 497 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacagangnnnntct 556
|| || ||||||||||||||||| ||||| || |||||||| |||||||| | |||
Sbjct: 456 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtg---gtct 512
Query: 557 caaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcn 616
|| |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 513 cagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattct 572
Query: 617 nncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
||||||| || ||||||||||||||||||||||||||||
Sbjct: 573 tgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 619
>dbj|AK099636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L07, full
insert sequence
Length = 2207
Score = 404 bits (204), Expect = e-110
Identities = 354/407 (86%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 376 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 435
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 436 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 495
Query: 377 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 436
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 496 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 555
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 496
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 556 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 615
Query: 497 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacagangnnnntct 556
|| || ||||||||||||||||| ||||| || |||||||| |||||||| | |||
Sbjct: 616 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtg---gtct 672
Query: 557 caaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcn 616
|| |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 673 cagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattct 732
Query: 617 nncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
||||||| || ||||||||||||||||||||||||||||
Sbjct: 733 tgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 779
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 110 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 169
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 170 caaccatacagttgctcaattctggtctcag 200
>dbj|AK104345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D09, full
insert sequence
Length = 1894
Score = 404 bits (204), Expect = e-110
Identities = 354/407 (86%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 64 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 123
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 124 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 183
Query: 377 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 436
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 184 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 243
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 496
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 244 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 303
Query: 497 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacagangnnnntct 556
|| || ||||||||||||||||| ||||| || |||||||| |||||||| | |||
Sbjct: 304 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtg---gtct 360
Query: 557 caaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcn 616
|| |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 361 cagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattct 420
Query: 617 nncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
||||||| || ||||||||||||||||||||||||||||
Sbjct: 421 tgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 467
>dbj|AK111821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018J24, full
insert sequence
Length = 3716
Score = 404 bits (204), Expect = e-110
Identities = 354/407 (86%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1899 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 1958
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1959 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2018
Query: 377 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 436
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 2019 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 2078
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 496
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 2079 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 2138
Query: 497 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacagangnnnntct 556
|| || ||||||||||||||||| ||||| || |||||||| |||||||| | |||
Sbjct: 2139 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtg---gtct 2195
Query: 557 caaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcn 616
|| |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 2196 cagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattct 2255
Query: 617 nncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
||||||| || ||||||||||||||||||||||||||||
Sbjct: 2256 tgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 2302
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 1633 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 1692
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 1693 caaccatacagttgctcaattctggtctcag 1723
>gb|AU083547.1|AU083547 AU083547 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10591, mRNA sequence
Length = 542
Score = 309 bits (156), Expect = 1e-081
Identities = 252/282 (89%), Gaps = 2/282 (0%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 258 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 317
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 318 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 377
Query: 377 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 436
|||||||||||||||||||| |||| ||| ||||| || ||||| ||||| ||||| |||
Sbjct: 378 catggccatggctgctggagttctg-tcctaaacttgcagggctccaaagatgcggcaag 436
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacc-tcaagagaggggcattcgc 495
|| || ||||||||||||||||||||||||||||| |||| |||||||||| |||||| |
Sbjct: 437 agctgcaggctgaggtggataaactatctgaggcctgaccttcaagagaggtgcattctc 496
Query: 496 ccaagacgaagaagacctcatcatcgagctgcacgctgtcct 537
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 497 tcangaggaagaagacctcatcattgagctncatgctgtcct 538
Score = 91.7 bits (46), Expect = 5e-016
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 15 agaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctgcagccatgc 73
||||||||||||| || ||||||| |||||||||||||||||||||||| ||| |||| |
Sbjct: 1 agaggagtgccccctaacctttccctgctttccactgaaatctcctatccgcaaccatac 60
Query: 74 agttgctcaatcctggcctcag 95
||||||||||| |||| |||||
Sbjct: 61 agttgctcaattctggtctcag 82
>dbj|AK111803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087D08, full
insert sequence
Length = 1699
Score = 264 bits (133), Expect = 6e-068
Identities = 316/380 (83%), Gaps = 3/380 (0%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 276 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 335
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 336 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 395
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| ||||| || |||||||| || || || || || || |||||||| |||||||||||
Sbjct: 396 ccaaaacttgcagggcttcagagatgtggcaaaagctgcaggctgagatggataaactac 455
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 523
||||||| ||||| |||||||| |||||| | || || ||||| ||||||||| | |||
Sbjct: 456 ttgaggcctgacctaaagagaggtgcattctctcaggaggaagaggacctcatcgttgag 515
Query: 524 ctgcacgctgtcctcgggaacagangnnnntctcaaattgcagcgcagctgccagggagg 583
|| || ||||| || || ||||| | |||||||||||| | | |||||| || ||
Sbjct: 516 ctccatgctgttctgggaaacaggtg---gtctcaaattgcaacacggctgcctggaaga 572
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
||||| ||||||||||||||||| ||||| || ||||||| ||| ||||||||
Sbjct: 573 actgacaatgagatcaagaatctctggaattcatgcatcaagaagaagctgcggcagaaa 632
Query: 644 ggcattgatcccaacaccca 663
|||||||| || ||||||||
Sbjct: 633 ggcattgacccaaacaccca 652
>ref|XM_462838.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1287
Score = 264 bits (133), Expect = 6e-068
Identities = 316/380 (83%), Gaps = 3/380 (0%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 60
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 61 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 120
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| ||||| || |||||||| || || || || || || |||||||| |||||||||||
Sbjct: 121 ccaaaacttgcagggcttcagagatgtggcaaaagctgcaggctgagatggataaactac 180
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 523
||||||| ||||| |||||||| |||||| | || || ||||| ||||||||| | |||
Sbjct: 181 ttgaggcctgacctaaagagaggtgcattctctcaggaggaagaggacctcatcgttgag 240
Query: 524 ctgcacgctgtcctcgggaacagangnnnntctcaaattgcagcgcagctgccagggagg 583
|| || ||||| || || ||||| | |||||||||||| | | |||||| || ||
Sbjct: 241 ctccatgctgttctgggaaacaggtg---gtctcaaattgcaacacggctgcctggaaga 297
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
||||| ||||||||||||||||| ||||| || ||||||| ||| ||||||||
Sbjct: 298 actgacaatgagatcaagaatctctggaattcatgcatcaagaagaagctgcggcagaaa 357
Query: 644 ggcattgatcccaacaccca 663
|||||||| || ||||||||
Sbjct: 358 ggcattgacccaaacaccca 377
>emb|AJ495786.1|OSA495786 Oryza sativa (japonica cultivar-group) mRNA for MYB18 protein
Length = 1760
Score = 256 bits (129), Expect = 1e-065
Identities = 315/380 (82%), Gaps = 3/380 (0%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 271 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 330
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 331 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 390
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| ||||| || || ||||| || || || || || || |||||||| |||||||||||
Sbjct: 391 ccaaaacttgcaggacttcagagatgtggcaaaagctgcaggctgagatggataaactac 450
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 523
||||||| ||||| |||||||| |||||| | || || ||||| ||||||||| | |||
Sbjct: 451 ttgaggcctgacctaaagagaggtgcattctctcaggaggaagaggacctcatcgttgag 510
Query: 524 ctgcacgctgtcctcgggaacagangnnnntctcaaattgcagcgcagctgccagggagg 583
|| || ||||| || || ||||| | |||||||||||| | | |||||| || ||
Sbjct: 511 ctccatgctgttctgggaaacaggtg---gtctcaaattgcaacacggctgcctggaaga 567
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
||||| ||||||||||||||||| ||||| || ||||||| ||| ||||||||
Sbjct: 568 actgacaatgagatcaagaatctctggaattcatgcatcaagaagaagctgcggcagaaa 627
Query: 644 ggcattgatcccaacaccca 663
|||||||| || ||||||||
Sbjct: 628 ggcattgacccaaacaccca 647
>gb|CF276098.1|CF276098 14ETL--01-B22.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-B22, mRNA sequence
Length = 493
Score = 254 bits (128), Expect = 5e-065
Identities = 202/224 (90%), Gaps = 2/224 (0%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 270 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 329
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 330 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 389
Query: 377 catggccatggc-tgctgg-agctctgttcccaaactcgctgggcttcaaaggtgcggaa 434
|||||||||||| |||||| || |||||||| ||||| || ||||| ||||| ||||| |
Sbjct: 390 catggccatggcntgctggaagttctgttcctaaacttgcagggctccaaagatgcggca 449
Query: 435 agagttgtaggctgaggtggataaactatctgaggccagacctc 478
|||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 450 agagctgcaggctgaggtggataaactatctgaggcctgacctc 493
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 4 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 63
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 64 caaccatacagttgctcaattctggtctcag 94
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0111O13, complete sequence
Length = 126332
Score = 212 bits (107), Expect = 2e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 85409 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 85468
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 85469 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 85528
Query: 377 catggccatggctgctggagctctgttcccaaact 411
|||||||||||||||||||| |||||||| |||||
Sbjct: 85529 catggccatggctgctggagttctgttcctaaact 85563
Score = 141 bits (71), Expect = 6e-031
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 85699 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 85758
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 85759 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 85818
Query: 536 ctcgggaacag 546
|| ||||||||
Sbjct: 85819 cttgggaacag 85829
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 85143 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 85202
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 85203 caaccatacagttgctcaattctggtctcag 85233
Score = 93.7 bits (47), Expect = 1e-016
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 85939 tctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaat 85998
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 85999 tcttgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 86048
>gb|AACV01010857.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010857, whole
genome shotgun sequence
Length = 29601
Score = 212 bits (107), Expect = 2e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 10376 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 10317
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 10316 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 10257
Query: 377 catggccatggctgctggagctctgttcccaaact 411
|||||||||||||||||||| |||||||| |||||
Sbjct: 10256 catggccatggctgctggagttctgttcctaaact 10222
Score = 141 bits (71), Expect = 6e-031
Identities = 116/131 (88%)
Strand = Plus / Minus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 10086 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 10027
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 10026 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 9967
Query: 536 ctcgggaacag 546
|| ||||||||
Sbjct: 9966 cttgggaacag 9956
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 10642 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 10583
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 10582 caaccatacagttgctcaattctggtctcag 10552
Score = 93.7 bits (47), Expect = 1e-016
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 9846 tctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaat 9787
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 9786 tcttgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 9737
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 212 bits (107), Expect = 2e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1343365 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 1343424
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1343425 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 1343484
Query: 377 catggccatggctgctggagctctgttcccaaact 411
|||||||||||||||||||| |||||||| |||||
Sbjct: 1343485 catggccatggctgctggagttctgttcctaaact 1343519
Score = 141 bits (71), Expect = 6e-031
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 1343655 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 1343714
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 1343715 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 1343774
Query: 536 ctcgggaacag 546
|| ||||||||
Sbjct: 1343775 cttgggaacag 1343785
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 1343099 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 1343158
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 1343159 caaccatacagttgctcaattctggtctcag 1343189
Score = 93.7 bits (47), Expect = 1e-016
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 1343895 tctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaat 1343954
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 1343955 tcttgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 1344004
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 212 bits (107), Expect = 2e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2289161 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 2289220
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 2289221 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2289280
Query: 377 catggccatggctgctggagctctgttcccaaact 411
|||||||||||||||||||| |||||||| |||||
Sbjct: 2289281 catggccatggctgctggagttctgttcctaaact 2289315
Score = 141 bits (71), Expect = 6e-031
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 2289451 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 2289510
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 2289511 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 2289570
Query: 536 ctcgggaacag 546
|| ||||||||
Sbjct: 2289571 cttgggaacag 2289581
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 2288895 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 2288954
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 2288955 caaccatacagttgctcaattctggtctcag 2288985
Score = 93.7 bits (47), Expect = 1e-016
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 2289691 tctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaat 2289750
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 2289751 tcttgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 2289800
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 212 bits (107), Expect = 2e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2289161 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 2289220
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 2289221 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2289280
Query: 377 catggccatggctgctggagctctgttcccaaact 411
|||||||||||||||||||| |||||||| |||||
Sbjct: 2289281 catggccatggctgctggagttctgttcctaaact 2289315
Score = 141 bits (71), Expect = 6e-031
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 2289451 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 2289510
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 2289511 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 2289570
Query: 536 ctcgggaacag 546
|| ||||||||
Sbjct: 2289571 cttgggaacag 2289581
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 2288895 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 2288954
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 2288955 caaccatacagttgctcaattctggtctcag 2288985
Score = 93.7 bits (47), Expect = 1e-016
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 2289691 tctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaat 2289750
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 2289751 tcttgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 2289800
Score = 44.1 bits (22), Expect = 0.098
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 477
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 26502162 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 26502211
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 212 bits (107), Expect = 2e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2252978 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 2253037
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 2253038 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2253097
Query: 377 catggccatggctgctggagctctgttcccaaact 411
|||||||||||||||||||| |||||||| |||||
Sbjct: 2253098 catggccatggctgctggagttctgttcctaaact 2253132
Score = 141 bits (71), Expect = 6e-031
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 2253268 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 2253327
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 2253328 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 2253387
Query: 536 ctcgggaacag 546
|| ||||||||
Sbjct: 2253388 cttgggaacag 2253398
Score = 109 bits (55), Expect = 2e-021
Identities = 83/91 (91%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 aagaaaaggagaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctg 64
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
Sbjct: 2252712 aagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccg 2252771
Query: 65 cagccatgcagttgctcaatcctggcctcag 95
|| |||| |||||||||||| |||| |||||
Sbjct: 2252772 caaccatacagttgctcaattctggtctcag 2252802
Score = 93.7 bits (47), Expect = 1e-016
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 2253508 tctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaat 2253567
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 2253568 tcttgcatcaagaagaagctccggcagaaaggcattgatcccaacaccca 2253617
Score = 44.1 bits (22), Expect = 0.098
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 477
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 26781100 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 26781149
>gb|D48692.1|D48692 RICS15068A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 409
Score = 202 bits (102), Expect = 2e-049
Identities = 137/149 (91%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 257 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 316
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 317 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 376
Query: 377 catggccatggctgctggagctctgttcc 405
||||||||||| |||||||| ||||||||
Sbjct: 377 catggccatggntgctggagttctgttcc 405
Score = 91.7 bits (46), Expect = 5e-016
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 15 agaggagtgcccc-tagcctttccttgctttccactgaaatctcctatctgcagccatgc 73
||||||||||||| || ||||||| |||||||||||||||||||||||| ||| |||| |
Sbjct: 1 agaggagtgccccctaacctttccctgctttccactgaaatctcctatccgcaaccatac 60
Query: 74 agttgctcaatcctggcctcag 95
||||||||||| |||| |||||
Sbjct: 61 agttgctcaattctggtctcag 82
>gb|AQ050675.1|AQ050675 nbxb0004cA07f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0004B13f, DNA sequence
Length = 809
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 174 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 233
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 234 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 293
Query: 404 cccaaact 411
|| |||||
Sbjct: 294 ccaaaact 301
Score = 65.9 bits (33), Expect = 3e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 447 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcangag 506
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 507 gaagaggacctcatcgttgagctccatgctgt 538
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0004B13
Length = 142268
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 142095 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 142036
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 142035 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 141976
Query: 404 cccaaact 411
|| |||||
Sbjct: 141975 ccaaaact 141968
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 141613 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 141554
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 141553 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 141504
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 141822 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 141763
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 141762 gaagaggacctcatcgttgagctccatgctgt 141731
>gb|AACV01000735.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000735, whole
genome shotgun sequence
Length = 53069
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 31551 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 31492
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 31491 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 31432
Query: 404 cccaaact 411
|| |||||
Sbjct: 31431 ccaaaact 31424
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 31069 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 31010
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 31009 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 30960
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 31278 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 31219
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 31218 gaagaggacctcatcgttgagctccatgctgt 31187
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10215278 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10215219
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10215218 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10215159
Query: 404 cccaaact 411
|| |||||
Sbjct: 10215158 ccaaaact 10215151
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 10214796 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 10214737
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 10214736 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 10214687
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10215005 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10214946
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 10214945 gaagaggacctcatcgttgagctccatgctgt 10214914
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 20317095 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 20317036
Query: 485 gg 486
||
Sbjct: 20317035 gg 20317034
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29543907 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 29543956
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 482
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3518431 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3518383
Score = 44.1 bits (22), Expect = 0.098
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 309 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 354
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 29207523 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 29207478
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 164965 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 164906
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 164905 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 164846
Query: 404 cccaaact 411
|| |||||
Sbjct: 164845 ccaaaact 164838
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 164483 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 164424
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 164423 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 164374
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 164692 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 164633
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 164632 gaagaggacctcatcgttgagctccatgctgt 164601
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0498A12
Length = 159749
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 82810 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 82751
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 82750 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 82691
Query: 404 cccaaact 411
|| |||||
Sbjct: 82690 ccaaaact 82683
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 82328 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 82269
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 82268 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 82219
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 82537 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 82478
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 82477 gaagaggacctcatcgttgagctccatgctgt 82446
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10344675 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10344616
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10344615 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10344556
Query: 404 cccaaact 411
|| |||||
Sbjct: 10344555 ccaaaact 10344548
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 10344193 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 10344134
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 10344133 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 10344084
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10344402 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10344343
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 10344342 gaagaggacctcatcgttgagctccatgctgt 10344311
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 482
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3582840 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3582792
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10344675 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10344616
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10344615 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10344556
Query: 404 cccaaact 411
|| |||||
Sbjct: 10344555 ccaaaact 10344548
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 10344193 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 10344134
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 10344133 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 10344084
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10344402 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10344343
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 10344342 gaagaggacctcatcgttgagctccatgctgt 10344311
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 19900959 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 19900900
Query: 485 gg 486
||
Sbjct: 19900899 gg 19900898
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29103975 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 29104024
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 482
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3582840 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3582792
Score = 44.1 bits (22), Expect = 0.098
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 309 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 354
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 28780870 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 28780825
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 174 bits (88), Expect = 4e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10217496 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10217437
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10217436 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10217377
Query: 404 cccaaact 411
|| |||||
Sbjct: 10217376 ccaaaact 10217369
Score = 69.9 bits (35), Expect = 2e-009
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
|||||||||||| | | |||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 10217014 tctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatctctggaat 10216955
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacaccca 663
|| ||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 10216954 tcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacaccca 10216905
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 443 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 502
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10217223 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10217164
Query: 503 gaagaagacctcatcatcgagctgcacgctgt 534
||||| ||||||||| | ||||| || |||||
Sbjct: 10217163 gaagaggacctcatcgttgagctccatgctgt 10217132
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 20238378 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 20238319
Query: 485 gg 486
||
Sbjct: 20238318 gg 20238317
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29463237 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 29463286
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 482
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3520629 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3520581
Score = 44.1 bits (22), Expect = 0.098
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 309 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 354
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 29126853 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 29126808
>gb|D48383.1|D48383 RICS14555A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 494
Score = 161 bits (81), Expect = 6e-037
Identities = 114/125 (91%)
Strand = Plus / Plus
Query: 257 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 316
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 240 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 299
Query: 317 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 376
|||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 300 ttgaggaaggggctctggtcccctgaggaggatgagaaggtcatgaatcacataaccaag 359
Query: 377 catgg 381
|||||
Sbjct: 360 catgg 364
Score = 81.8 bits (41), Expect = 5e-013
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 31 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 90
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 1 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 60
Query: 91 ctcag 95
|||||
Sbjct: 61 ctcag 65
>ref|XM_470673.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1098
Score = 139 bits (70), Expect = 2e-030
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 16 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 75
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgctggg 418
||||||||||| | ||| ||||||| || ||||||||||| || ||||| || || ||
Sbjct: 76 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaagcttgcagga 135
Query: 419 cttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctc 478
|| | || ||||| ||||| || ||| |||||||||||||||| |||||||||||||||
Sbjct: 136 ctggagagatgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctc 195
Query: 479 aagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgca 528
||||| || | ||| |||| || || |||||||||||||| |||||||
Sbjct: 196 aagaggggcaccttctcccaggaggaggaagacctcatcattcagctgca 245
>gb|CB643957.1|CB643957 OSJNEb04P04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04P04 5', mRNA sequence
Length = 777
Score = 137 bits (69), Expect = 9e-030
Identities = 174/209 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 163 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 222
Query: 372 caaagcatggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcg 431
| ||| |||||||||||||||||||||| || ||||| || || || ||| | || || |
Sbjct: 223 ccaagtatggccatggctgctggagctccgtccccaagcttgcaggccttgagagatgtg 282
Query: 432 gaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcat 491
| ||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct: 283 ggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcat 342
Query: 492 tcgcccaagacgaagaagacctcatcatc 520
|| | || || ||||||||||||||||||
Sbjct: 343 tctcacaggaagaagaagacctcatcatc 371
>ref|NM_193128.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 525
Score = 137 bits (69), Expect = 9e-030
Identities = 174/209 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 29 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 88
Query: 372 caaagcatggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcg 431
| ||| |||||||||||||||||||||| || ||||| || || || ||| | || || |
Sbjct: 89 ccaagtatggccatggctgctggagctccgtccccaagcttgcaggccttgagagatgtg 148
Query: 432 gaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcat 491
| ||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct: 149 ggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcat 208
Query: 492 tcgcccaagacgaagaagacctcatcatc 520
|| | || || ||||||||||||||||||
Sbjct: 209 tctcacaggaagaagaagacctcatcatc 237
>gb|D42008.1|D42008 RICS5087A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 494
Score = 131 bits (66), Expect = 5e-028
Identities = 101/112 (90%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 258 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcanctgag 317
Query: 344 gaggatga-gaaactcatgaatcacataacaaagcatggccatggctgctgg 394
|||||||| ||| |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 318 gaggatgaggaagctcatggaccacataaccaagcatggncatggctgctgg 369
>gb|D40175.1|D40175 RICS1959A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 391
Score = 115 bits (58), Expect = 3e-023
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcag-aagctgagaaaggggctctggtcccctga 342
|||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 261 atggggagacattcctgctgctacaagcaggaagctgaggaaggggctctggtcacctga 320
Query: 343 gga-ggatgagaaactcatgaatcacataacaaagca-tggccatggctgctggagc 397
||| ||||||||| |||||||| |||||||| ||||| ||||||| ||| |||||||
Sbjct: 321 ggagggatgagaagctcatgaaccacataaccaagcattggccatngcttctggagc 377
>gb|C73089.1|C73089 C73089 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2888_1A, mRNA sequence
Length = 392
Score = 115 bits (58), Expect = 3e-023
Identities = 102/113 (90%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 265 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgan 324
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggag 396
||||||||||| |||||| | ||||| || |||||||| ||||||||||||||
Sbjct: 325 gaggatgagaagctcatg-accacat-accaagcatgg-catggctgctggag 374
>gb|AQ287492.1|AQ287492 nbxb0030K04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030K04r, DNA sequence
Length = 690
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 330 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 389
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 390 tcacaggaagaagaagacctcatcatc 416
>gb|AQ329740.1|AQ329740 nbxb0045L21r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0045L21r, DNA sequence
Length = 890
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 294 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 353
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 354 tcacaggaagaagaagacctcatcatc 380
>gb|AQ051267.1|AQ051267 nbxb0001cF08f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0001L15f, DNA sequence
Length = 658
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 296 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 355
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 356 tcacaggaagaagaagacctcatcatc 382
>gb|AACV01016862.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016862, whole
genome shotgun sequence
Length = 35008
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 34365 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 34306
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 34305 tcacaggaagaagaagacctcatcatc 34279
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 34762 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 34703
Query: 372 caaagcatggccatggctgctggagctctgttcccaa 408
| ||| |||||||||||||||||||||| || |||||
Sbjct: 34702 ccaagtatggccatggctgctggagctccgtccccaa 34666
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0455H11
Length = 101607
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 77496 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 77555
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 77556 tcacaggaagaagaagacctcatcatc 77582
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 77099 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 77158
Query: 372 caaagcatggccatggctgctggagctctgttcccaa 408
| ||| |||||||||||||||||||||| || |||||
Sbjct: 77159 ccaagtatggccatggctgctggagctccgtccccaa 77195
>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1332_C12
Length = 67349
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 22446 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 22505
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 22506 tcacaggaagaagaagacctcatcatc 22532
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 22049 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 22108
Query: 372 caaagcatggccatggctgctggagctctgttcccaa 408
| ||| |||||||||||||||||||||| || |||||
Sbjct: 22109 ccaagtatggccatggctgctggagctccgtccccaa 22145
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 13915873 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 13915932
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 13915933 tcacaggaagaagaagacctcatcatc 13915959
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 13915476 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 13915535
Query: 372 caaagcatggccatggctgctggagctctgttcccaa 408
| ||| |||||||||||||||||||||| || |||||
Sbjct: 13915536 ccaagtatggccatggctgctggagctccgtccccaa 13915572
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 11768662 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 11768721
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 11768722 tcacaggaagaagaagacctcatcatc 11768748
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 11768265 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 11768324
Query: 372 caaagcatggccatggctgctggagctctgttcccaa 408
| ||| |||||||||||||||||||||| || |||||
Sbjct: 11768325 ccaagtatggccatggctgctggagctccgtccccaa 11768361
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 25168101 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 25168160
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 25168161 tcacaggaagaagaagacctcatcatc 25168187
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 25167704 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 25167763
Query: 372 caaagcatggccatggctgctggagctctgttcccaa 408
| ||| |||||||||||||||||||||| || |||||
Sbjct: 25167764 ccaagtatggccatggctgctggagctccgtccccaa 25167800
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 93.7 bits (47), Expect = 1e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 26302868 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 26302927
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || ||||||||||||||||||
Sbjct: 26302928 tcacaggaagaagaagacctcatcatc 26302954
Score = 65.9 bits (33), Expect = 3e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 312 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 371
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 26302471 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 26302530
Query: 372 caaagcatggccatggctgctggagctctgttcccaa 408
| ||| |||||||||||||||||||||| || |||||
Sbjct: 26302531 ccaagtatggccatggctgctggagctccgtccccaa 26302567
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
sequence
Length = 135594
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 103640 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 103699
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 103700 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 103749
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 103977 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 104036
Query: 488 gcattcgcccaagacgaagaagacctcatcatcgagctgca 528
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 104037 accttctcccaggaggaggaagacctcatcattcagctgca 104077
>gb|AACV01006722.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006722, whole
genome shotgun sequence
Length = 31684
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 31187 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 31246
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 31247 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 31296
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 31524 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 31583
Query: 488 gcattcgcccaagacgaagaagacctcatcatcgagctgca 528
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 31584 accttctcccaggaggaggaagacctcatcattcagctgca 31624
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 828413 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 828354
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 828353 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 828304
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 828076 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 828017
Query: 488 gcattcgcccaagacgaagaagacctcatcatcgagctgca 528
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 828016 accttctcccaggaggaggaagacctcatcattcagctgca 827976
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 1046038 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 1045979
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 1045978 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 1045929
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1045701 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 1045642
Query: 488 gcattcgcccaagacgaagaagacctcatcatcgagctgca 528
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 1045641 accttctcccaggaggaggaagacctcatcattcagctgca 1045601
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 15096745 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 15096686
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 15096685 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 15096636
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 15096408 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 15096349
Query: 488 gcattcgcccaagacgaagaagacctcatcatcgagctgca 528
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 15096348 accttctcccaggaggaggaagacctcatcattcagctgca 15096308
Score = 46.1 bits (23), Expect = 0.025
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 468
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 10963375 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 10963333
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 563 gcagcgcagctgccagggaggactgataatgagatcaagaa 603
|||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 32556134 gcagcgcagctgccggggcggacggacaatgacatcaagaa 32556094
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 14432716 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 14432657
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 14432656 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 14432607
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 14432379 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 14432320
Query: 488 gcattcgcccaagacgaagaagacctcatcatcgagctgca 528
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 14432319 accttctcccaggaggaggaagacctcatcattcagctgca 14432279
Score = 46.1 bits (23), Expect = 0.025
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 468
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 10682636 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 10682594
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 563 gcagcgcagctgccagggaggactgataatgagatcaagaa 603
|||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 31740469 gcagcgcagctgccggggcggacggacaatgacatcaagaa 31740429
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 14437741 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 14437682
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 14437681 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 14437632
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 14437404 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 14437345
Query: 488 gcattcgcccaagacgaagaagacctcatcatcgagctgca 528
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 14437344 accttctcccaggaggaggaagacctcatcattcagctgca 14437304
Score = 46.1 bits (23), Expect = 0.025
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 468
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 10684535 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 10684493
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 563 gcagcgcagctgccagggaggactgataatgagatcaagaa 603
|||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 31649953 gcagcgcagctgccggggcggacggacaatgacatcaagaa 31649913
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 869,963
Number of Sequences: 438736
Number of extensions: 869963
Number of successful extensions: 5995
Number of sequences better than 0.5: 131
Number of HSP's better than 0.5 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5137
Number of HSP's gapped (non-prelim): 828
length of query: 687
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 666
effective length of database: 2,791,206,460
effective search space: 1858943502360
effective search space used: 1858943502360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)