BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL10h01.xg.2.1
(610 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF324737.1|CF324737 JMT1--01-F11.g1 AtJMT-overexpressing... 143 1e-031
gb|CV722395.1|CV722395 YTPSP--01-A08.b1 TPSP-overexpression... 143 1e-031
dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA... 143 1e-031
dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA... 143 1e-031
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 143 1e-031
ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 143 1e-031
ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-... 143 1e-031
dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXR... 143 1e-031
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 143 1e-031
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 143 1e-031
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 143 1e-031
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing ... 141 5e-031
gb|CB658472.1|CB658472 OSJNEc14I12.f OSJNEc Oryza sativa (j... 135 3e-029
gb|CF324739.1|CF324739 JMT1--01-F13.g1 AtJMT-overexpressing... 135 3e-029
gb|D39780.1|D39780 RICS1371A Rice shoot Oryza sativa (japon... 133 1e-028
gb|D39807.1|D39807 RICS1411A Rice shoot Oryza sativa (japon... 133 1e-028
gb|AU067866.1|AU067866 AU067866 Rice callus Oryza sativa (j... 129 2e-027
gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japon... 103 1e-019
gb|AU184071.1|AU184071 AU184071 Rice root Oryza sativa (jap... 103 1e-019
gb|D24406.1|D24406 RICR1848A Rice root Oryza sativa (japoni... 92 4e-016
dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA... 88 6e-015
gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) c... 88 6e-015
ref|XM_473793.1| Oryza sativa (japonica cultivar-group), p... 88 6e-015
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 88 6e-015
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 88 6e-015
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 88 6e-015
emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromoso... 88 6e-015
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 88 6e-015
ref|XM_473792.1| Oryza sativa (japonica cultivar-group), p... 86 3e-014
gb|AQ916489.1|AQ916489 nbeb0065O07r CUGI Rice BAC Library (... 78 6e-012
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 78 6e-012
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 78 6e-012
gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) c... 78 6e-012
ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA 78 6e-012
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|XM_473788.1| Oryza sativa (japonica cultivar-group), p... 72 4e-010
emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromoso... 72 4e-010
gb|AQ861400.1|AQ861400 nbeb0016H04r CUGI Rice BAC Library (... 64 9e-008
dbj|AK061126.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
dbj|AK104060.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
dbj|AK119538.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
gb|AC113930.2| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
ref|NM_187656.1| Oryza sativa (japonica cultivar-group), p... 62 4e-007
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 62 4e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CB648710.1|CB648710 OSJNEb12D18.f OSJNEb Oryza sativa (j... 60 1e-006
gb|CB652809.1|CB652809 OSJNEc03D09.r OSJNEc Oryza sativa (j... 60 1e-006
gb|CB653528.1|CB653528 OSJNEc04K08.r OSJNEc Oryza sativa (j... 60 1e-006
gb|CB661481.1|CB661481 OSJNEd04G16.f OSJNEd Oryza sativa (j... 60 1e-006
gb|CB662584.1|CB662584 OSJNEd06M04.f OSJNEd Oryza sativa (j... 60 1e-006
gb|CB662585.1|CB662585 OSJNEd06M04.r OSJNEd Oryza sativa (j... 60 1e-006
gb|CB668487.1|CB668487 OSJNEd16F20.f OSJNEd Oryza sativa (j... 60 1e-006
gb|CF308277.1|CF308277 ABF--02-A16.b1 ABF3-overexpressing t... 60 1e-006
dbj|AP003839.1| Oryza sativa (japonica cultivar-group) chro... 60 1e-006
dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 60 1e-006
dbj|AP004784.3| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|AACV01013814.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
gb|AACV01016188.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
ref|NM_187323.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-006
dbj|AP004299.2| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 60 1e-006
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
dbj|AP003953.1| Oryza sativa (japonica cultivar-group) chro... 58 6e-006
dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK073731.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK111340.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AP004026.3| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
dbj|AP003989.4| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
dbj|AP004674.2| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|AACV01005666.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
gb|AACV01010531.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
gb|AACV01016440.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|XM_468468.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
ref|XM_478514.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
ref|XM_478515.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 58 6e-006
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 58 6e-006
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromoso... 58 6e-006
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|DU168784.1|DU168784 UCDRdSpm768A_3.1 UCD RdSpm Rice Inse... 56 2e-005
gb|C27146.1|C27146 C27146 Rice callus cDNA Oryza sativa (ja... 52 4e-004
gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O1... 52 4e-004
gb|AACV01022039.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|NM_197613.1| Oryza sativa (japonica cultivar-group) put... 52 4e-004
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 52 4e-004
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AACV01005750.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|DU168821.1|DU168821 UCDRdSpm767_3.1 UCD RdSpm Rice Inser... 48 0.006
gb|DU169063.1|DU169063 UCDRdSpm768_3.1 UCD RdSpm Rice Inser... 48 0.006
gb|D24580.1|D24580 RICR2204A Rice root Oryza sativa (japoni... 48 0.006
dbj|AP004644.1| Oryza sativa (japonica cultivar-group) chro... 48 0.006
dbj|AP004657.2| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01017705.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|XM_480898.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.006
dbj|AP003907.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AQ159307.1|AQ159307 nbxb0013F13r CUGI Rice BAC Library O... 46 0.022
gb|AQ329113.1|AQ329113 nbxb0044M08r CUGI Rice BAC Library O... 46 0.022
gb|AQ575578.1|AQ575578 nbxb0087F21r CUGI Rice BAC Library O... 46 0.022
gb|AQ795518.1|AQ795518 nbxb0056M12r CUGI Rice BAC Library O... 46 0.022
gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (ja... 46 0.022
gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (ja... 46 0.022
dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AP005249.3| Oryza sativa (japonica cultivar-group) geno... 46 0.022
gb|AACV01010434.1| Oryza sativa (japonica cultivar-group) c... 46 0.022
ref|XM_473787.1| Oryza sativa (japonica cultivar-group), p... 46 0.022
ref|XM_480899.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.022
gb|AU066184.1|AU066184 AU066184 Rice shoot Oryza sativa (ja... 44 0.087
gb|AU066253.1|AU066253 AU066253 Rice shoot Oryza sativa (ja... 44 0.087
gb|CF325257.1|CF325257 JMT1--02-L23.g1 AtJMT-overexpressing... 44 0.087
dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.087
dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.087
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 44 0.087
gb|AACV01023313.1| Oryza sativa (japonica cultivar-group) c... 44 0.087
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.087
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
gb|AU164201.1|AU164201 AU164201 Rice panicle (longer than 1... 42 0.34
dbj|AP004814.3| Oryza sativa (japonica cultivar-group) geno... 42 0.34
dbj|AP004995.3| Oryza sativa (japonica cultivar-group) geno... 42 0.34
gb|AACV01005448.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
gb|AACV01013383.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
ref|XM_467882.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.34
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.34
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.34
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
>gb|CF324737.1|CF324737 JMT1--01-F11.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-F11, mRNA sequence
Length = 302
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 98 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 157
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 158 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 217
Query: 420 caac 423
||||
Sbjct: 218 caac 221
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 487 caccagttcgacctctggttcgacccctccgccgactaccacacctaca 535
||||||||| |||| |||||||||||| ||||||||| |||||||||||
Sbjct: 248 caccagttctacctgtggttcgaccccaccgccgacttccacacctaca 296
>gb|CV722395.1|CV722395 YTPSP--01-A08.b1 TPSP-overexpression transgenic rice yeast two
hybrid lambda phage cDNA library (YTPSP) Oryza sativa
(japonica cultivar-group) cDNA clone YTPSP--01-A08, mRNA
sequence
Length = 514
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 257 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 316
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 317 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 376
Query: 420 caac 423
||||
Sbjct: 377 caac 380
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 403 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 462
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 463 tcgaccccaccgccgacttccacacctacaagatcatctggaa 505
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full
insert sequence
Length = 1127
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 262 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 321
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 322 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 381
Query: 420 caac 423
||||
Sbjct: 382 caac 385
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 408 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 467
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 468 tcgaccccaccgccgacttccacacctacaagatcatctggaa 510
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full
insert sequence
Length = 1111
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 267 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 326
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 327 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 386
Query: 420 caac 423
||||
Sbjct: 387 caac 390
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 413 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 472
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 473 tcgaccccaccgccgacttccacacctacaagatcatctggaa 515
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 62044 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 62103
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 62104 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 62163
Query: 420 caac 423
||||
Sbjct: 62164 caac 62167
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 62190 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 62249
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 62250 tcgaccccaccgccgacttccacacctacaagatcatctggaa 62292
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 119016 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 118957
Query: 544 tggaacc 550
|||||||
Sbjct: 118956 tggaacc 118950
>gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002670, whole
genome shotgun sequence
Length = 40539
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 5651 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 5710
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 5711 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 5770
Query: 420 caac 423
||||
Sbjct: 5771 caac 5774
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 5797 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 5856
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 5857 tcgaccccaccgccgacttccacacctacaagatcatctggaa 5899
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1111
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 267 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 326
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 327 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 386
Query: 420 caac 423
||||
Sbjct: 387 caac 390
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 413 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 472
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 473 tcgaccccaccgccgacttccacacctacaagatcatctggaa 515
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA
Length = 1127
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 262 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 321
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 322 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 381
Query: 420 caac 423
||||
Sbjct: 382 caac 385
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 408 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 467
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 468 tcgaccccaccgccgacttccacacctacaagatcatctggaa 510
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan
endotransglycosylase-related protein 5, complete cds
Length = 1280
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 258 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 317
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 318 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 377
Query: 420 caac 423
||||
Sbjct: 378 caac 381
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 404 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 463
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 464 tcgaccccaccgccgacttccacacctacaagatcatctggaa 506
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 8089461 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 8089520
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 8089521 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 8089580
Query: 420 caac 423
||||
Sbjct: 8089581 caac 8089584
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 8089607 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 8089666
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 8089667 tcgaccccaccgccgacttccacacctacaagatcatctggaa 8089709
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 8146433 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 8146374
Query: 544 tggaacc 550
|||||||
Sbjct: 8146373 tggaacc 8146367
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 499 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 8250065 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 8250116
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 520 gactaccacacctacaccatcatctggaacc 550
|||| ||| ||||||||||||||||||||||
Sbjct: 8255893 gacttccatacctacaccatcatctggaacc 8255923
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Minus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 10685544 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 10685485
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 10685484 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 10685425
Query: 420 caac 423
||||
Sbjct: 10685424 caac 10685421
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 10685398 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 10685339
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 10685338 tcgaccccaccgccgacttccacacctacaagatcatctggaa 10685296
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Minus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 35887265 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 35887206
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 35887205 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 35887146
Query: 420 caac 423
||||
Sbjct: 35887145 caac 35887142
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 35887119 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 35887060
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 35887059 tcgaccccaccgccgacttccacacctacaagatcatctggaa 35887017
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 143 bits (72), Expect = 1e-031
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 8321935 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 8321994
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 8321995 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 8322054
Query: 420 caac 423
||||
Sbjct: 8322055 caac 8322058
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 8322081 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 8322140
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 8322141 tcgaccccaccgccgacttccacacctacaagatcatctggaa 8322183
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 8378907 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 8378848
Query: 544 tggaacc 550
|||||||
Sbjct: 8378847 tggaacc 8378841
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 499 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 8482539 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 8482590
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 520 gactaccacacctacaccatcatctggaacc 550
|||| ||| ||||||||||||||||||||||
Sbjct: 8488367 gacttccatacctacaccatcatctggaacc 8488397
>gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-F05, mRNA sequence
Length = 497
Score = 141 bits (71), Expect = 5e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 301 ggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtgc 360
||||||||||||||| ||||||||||| || | || |||||||||||||||||| | | |
Sbjct: 9 ggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctcc 68
Query: 361 ttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggc 420
||||||||||| |||||||| |||||||| | ||||||||||||||| ||||||||||||
Sbjct: 69 ttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggc 128
Query: 421 aac 423
|||
Sbjct: 129 aac 131
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 154 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 213
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 214 tcgaccccaccgccgacttccacacctacaagatcatctggaa 256
>gb|CB658472.1|CB658472 OSJNEc14I12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14I12 5', mRNA sequence
Length = 597
Score = 135 bits (68), Expect = 3e-029
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
||||||||||| |||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 233 cggcgagttcaacgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 292
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||
Sbjct: 293 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatggg 352
Query: 420 caac 423
||||
Sbjct: 353 caac 356
Score = 133 bits (67), Expect = 1e-028
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 379 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 438
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 439 tcgaccccaccgccgacttccacacctacaagatcatctggaa 481
>gb|CF324739.1|CF324739 JMT1--01-F13.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-F13, mRNA sequence
Length = 251
Score = 135 bits (68), Expect = 3e-029
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 98 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 157
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatggg 419
|||||||||||| |||||||| |||||||| | | ||||||||||||| |||||||||||
Sbjct: 158 cttctacctctcctccggcgagggcgacggccactacgagatcgacatcgagttcatggg 217
Query: 420 caac 423
||||
Sbjct: 218 caac 221
>gb|D39780.1|D39780 RICS1371A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 363
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 305 agttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtgcttct 364
||||||||||| ||||||||||| || | || |||||||||||||||||| | | |||||
Sbjct: 1 agttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttct 60
Query: 365 acctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaac 423
||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||
Sbjct: 61 acctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 119
Score = 127 bits (64), Expect = 8e-027
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||| ||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 142 tgaacaccancgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 201
Query: 506 tcgacccctccgccgactaccacacctacaccatcatctggaa 548
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 202 tcgaccccaccgccgacttccacacctacaagatcatctggaa 244
>gb|D39807.1|D39807 RICS1411A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 213
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 305 agttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtgcttct 364
||||||||||| ||||||||||| || | || |||||||||||||||||| | | |||||
Sbjct: 1 agttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctccttct 60
Query: 365 acctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaac 423
||||||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||
Sbjct: 61 acctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcatgggcaac 119
Score = 95.6 bits (48), Expect = 3e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 446 tgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 142 tgaacaccaacgtctgggctaatggcgacggcaagaaggagcaccagttctacctctggt 201
Query: 506 tcgacccc 513
||||||||
Sbjct: 202 tcgacccc 209
>gb|AU067866.1|AU067866 AU067866 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10287_7A, mRNA sequence
Length = 408
Score = 129 bits (65), Expect = 2e-027
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || |||||||||||||||||| | |
Sbjct: 289 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgccggcaccgtcacctc 348
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcat 416
|||||||||||| |||||||| |||||||| | ||||||||||||||| ||||||||
Sbjct: 349 cttctacctctcctccggcgagggcgacggccacgacgagatcgacatcgagttcat 405
>gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 371
Score = 103 bits (52), Expect = 1e-019
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 477 caagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacac 536
||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 1 caagaaggagcaccagttctacctctggttcgaccccaccgccgacttccacacctacaa 60
Query: 537 catcatctggaa 548
|||||||||||
Sbjct: 61 gatcatctggaa 72
>gb|AU184071.1|AU184071 AU184071 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0883, mRNA sequence
Length = 408
Score = 103 bits (52), Expect = 1e-019
Identities = 111/127 (87%), Gaps = 3/127 (2%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccg-ggggaactccgccggcaccgtctcgt 358
|||||||||||||||| ||||||||||| || | ||| ||||||||||||||||| | |
Sbjct: 249 cggcgagttcagcgtccagatgaagctcgtcggcgggnaactccgccggcaccgtaacct 308
Query: 359 gcttctacctctcttccggcgacggcg-acgggcgcgacg-agatcgacatggagttcat 416
|||||||||||| |||||||| |||| |||| | ||||| |||||||||| ||||||||
Sbjct: 309 ccttctacctctcctccggcgagggcgaacggccacgacgaagatcgacatcgagttcat 368
Query: 417 gggcaac 423
|||||||
Sbjct: 369 gggcaac 375
>gb|D24406.1|D24406 RICR1848A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1848_1A, mRNA sequence
Length = 310
Score = 91.7 bits (46), Expect = 4e-016
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
|||||||||||||||| ||||||||||| || | || ||||||| |||||||||| | |
Sbjct: 212 cggcgagttcagcgtccagatgaagctcgtcggcggcaactccgncggcaccgtcacctc 271
Query: 360 cttctacctctcttccggcgacggcgacgggcgcgacga 398
||||||||||| |||||||| |||||||| | ||||||
Sbjct: 272 cttctacctctnctccggcgagggcgacggncacgacga 310
>dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full
insert sequence
Length = 1234
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 497 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 556
Query: 543 ctggaacc 550
||||||||
Sbjct: 557 ctggaacc 564
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 297 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 344
>gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010438, whole
genome shotgun sequence
Length = 16114
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 6366 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 6425
Query: 543 ctggaacc 550
||||||||
Sbjct: 6426 ctggaacc 6433
Score = 85.7 bits (43), Expect = 3e-014
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 9736 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 9677
Query: 544 tggaacc 550
|||||||
Sbjct: 9676 tggaacc 9670
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 279 ctccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaa 338
||||| |||| ||||||| |||| | || || ||||||||| ||||||||| ||| |
Sbjct: 10133 ctccagggagaagtacctctacgtccagatcgacgtcgagatcaagctcatcgagggaga 10074
Query: 339 ctccgccggcaccgtct 355
|||||||||||||||||
Sbjct: 10073 ctccgccggcaccgtct 10057
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 6011 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 6058
>ref|XM_473793.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 966
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 429 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 488
Query: 543 ctggaacc 550
||||||||
Sbjct: 489 ctggaacc 496
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 229 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 276
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 453420 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 453361
Query: 543 ctggaacc 550
||||||||
Sbjct: 453360 ctggaacc 453353
Score = 85.7 bits (43), Expect = 3e-014
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 450051 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 450110
Query: 544 tggaacc 550
|||||||
Sbjct: 450111 tggaacc 450117
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 413441 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 413382
Query: 544 tgga 547
||||
Sbjct: 413381 tgga 413378
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 279 ctccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaa 338
||||| |||| ||||||| |||| | || || ||||||||| ||||||||| ||| |
Sbjct: 449654 ctccagggagaagtacctctacgtccagatcgacgtcgagatcaagctcatcgagggaga 449713
Query: 339 ctccgccggcaccgtct 355
|||||||||||||||||
Sbjct: 449714 ctccgccggcaccgtct 449730
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 453775 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 453728
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 393 cgacgagatcgacatggagttcatgggcaac 423
||||||||||||| |||||||| ||||||||
Sbjct: 404928 cgacgagatcgacctggagttcctgggcaac 404898
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 8272951 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 8272892
Query: 543 ctggaacc 550
||||||||
Sbjct: 8272891 ctggaacc 8272884
Score = 85.7 bits (43), Expect = 3e-014
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 8269581 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 8269640
Query: 544 tggaacc 550
|||||||
Sbjct: 8269641 tggaacc 8269647
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 8235530 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 8235471
Query: 544 tgga 547
||||
Sbjct: 8235470 tgga 8235467
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 494 tcgacctctggttcgacccctccgccgactaccacacctac 534
||||||| |||||||||||| ||||||||| ||||||||||
Sbjct: 9886521 tcgacctgtggttcgaccccaccgccgacttccacacctac 9886561
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 279 ctccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaa 338
||||| |||| ||||||| |||| | || || ||||||||| ||||||||| ||| |
Sbjct: 8269184 ctccagggagaagtacctctacgtccagatcgacgtcgagatcaagctcatcgagggaga 8269243
Query: 339 ctccgccggcaccgtct 355
|||||||||||||||||
Sbjct: 8269244 ctccgccggcaccgtct 8269260
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 8273306 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 8273259
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 393 cgacgagatcgacatggagttcatgggcaac 423
||||||||||||| |||||||| ||||||||
Sbjct: 8226925 cgacgagatcgacctggagttcctgggcaac 8226895
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 27417050 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 27416991
Query: 543 ctggaacc 550
||||||||
Sbjct: 27416990 ctggaacc 27416983
Score = 85.7 bits (43), Expect = 3e-014
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 27413680 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 27413739
Query: 544 tggaacc 550
|||||||
Sbjct: 27413740 tggaacc 27413746
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 27379629 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 27379570
Query: 544 tgga 547
||||
Sbjct: 27379569 tgga 27379566
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 494 tcgacctctggttcgacccctccgccgactaccacacctac 534
||||||| |||||||||||| ||||||||| ||||||||||
Sbjct: 29030620 tcgacctgtggttcgaccccaccgccgacttccacacctac 29030660
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 279 ctccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaa 338
||||| |||| ||||||| |||| | || || ||||||||| ||||||||| ||| |
Sbjct: 27413283 ctccagggagaagtacctctacgtccagatcgacgtcgagatcaagctcatcgagggaga 27413342
Query: 339 ctccgccggcaccgtct 355
|||||||||||||||||
Sbjct: 27413343 ctccgccggcaccgtct 27413359
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 27417405 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 27417358
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 393 cgacgagatcgacatggagttcatgggcaac 423
||||||||||||| |||||||| ||||||||
Sbjct: 27371024 cgacgagatcgacctggagttcctgggcaac 27370994
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
complete sequence
Length = 129037
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 32621 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 32562
Query: 543 ctggaacc 550
||||||||
Sbjct: 32561 ctggaacc 32554
Score = 85.7 bits (43), Expect = 3e-014
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 29252 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 29311
Query: 544 tggaacc 550
|||||||
Sbjct: 29312 tggaacc 29318
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 279 ctccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaa 338
||||| |||| ||||||| |||| | || || ||||||||| ||||||||| ||| |
Sbjct: 28855 ctccagggagaagtacctctacgtccagatcgacgtcgagatcaagctcatcgagggaga 28914
Query: 339 ctccgccggcaccgtct 355
|||||||||||||||||
Sbjct: 28915 ctccgccggcaccgtct 28931
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 32976 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 32929
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 483 ggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcat 542
|||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||| |
Sbjct: 30556913 ggagcagcagttctacctctggttcgaccccaccgccgacttccacaactacaccatcct 30556854
Query: 543 ctggaacc 550
||||||||
Sbjct: 30556853 ctggaacc 30556846
Score = 85.7 bits (43), Expect = 3e-014
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 30553544 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 30553603
Query: 544 tggaacc 550
|||||||
Sbjct: 30553604 tggaacc 30553610
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 30516931 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 30516872
Query: 544 tgga 547
||||
Sbjct: 30516871 tgga 30516868
Score = 58.0 bits (29), Expect = 6e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 494 tcgacctctggttcgacccctccgccgactaccacacctac 534
||||||| |||||||||||| ||||||||| ||||||||||
Sbjct: 32180524 tcgacctgtggttcgaccccaccgccgacttccacacctac 32180564
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 279 ctccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaa 338
||||| |||| ||||||| |||| | || || ||||||||| ||||||||| ||| |
Sbjct: 30553147 ctccagggagaagtacctctacgtccagatcgacgtcgagatcaagctcatcgagggaga 30553206
Query: 339 ctccgccggcaccgtct 355
|||||||||||||||||
Sbjct: 30553207 ctccgccggcaccgtct 30553223
Score = 48.1 bits (24), Expect = 0.006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 280 tccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctc 327
|||||||| |||| ||| | ||||||||||||| | ||||||||||||
Sbjct: 30557268 tccaaggaccagttcctcttcggcgagttcagcatggagatgaagctc 30557221
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 393 cgacgagatcgacatggagttcatgggcaac 423
||||||||||||| |||||||| ||||||||
Sbjct: 30508418 cgacgagatcgacctggagttcctgggcaac 30508388
>ref|XM_473792.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 570
Score = 85.7 bits (43), Expect = 3e-014
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 418 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 477
Query: 544 tggaacc 550
|||||||
Sbjct: 478 tggaacc 484
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 279 ctccaaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaa 338
||||| |||| ||||||| |||| | || || ||||||||| ||||||||| ||| |
Sbjct: 210 ctccagggagaagtacctctacgtccagatcgacgtcgagatcaagctcatcgagggaga 269
Query: 339 ctccgccggcaccgtct 355
|||||||||||||||||
Sbjct: 270 ctccgccggcaccgtct 286
>gb|AQ916489.1|AQ916489 nbeb0065O07r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0065O07r, DNA sequence
Length = 448
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 358 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 299
Query: 544 tggaacc 550
|||||||
Sbjct: 298 tggaacc 292
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 6220292 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 6220351
Query: 544 tggaacc 550
|||||||
Sbjct: 6220352 tggaacc 6220358
Score = 46.1 bits (23), Expect = 0.022
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 6215552 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 6215611
Query: 544 tggaacc 550
|||||||
Sbjct: 6215612 tggaacc 6215618
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 155373 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 155432
Query: 544 tggaacc 550
|||||||
Sbjct: 155433 tggaacc 155439
Score = 46.1 bits (23), Expect = 0.022
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 150633 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 150692
Query: 544 tggaacc 550
|||||||
Sbjct: 150693 tggaacc 150699
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 62582 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 62641
Query: 544 tggaacc 550
|||||||
Sbjct: 62642 tggaacc 62648
Score = 46.1 bits (23), Expect = 0.022
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 57842 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 57901
Query: 544 tggaacc 550
|||||||
Sbjct: 57902 tggaacc 57908
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 41526 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 41467
Query: 544 tggaacc 550
|||||||
Sbjct: 41466 tggaacc 41460
Score = 46.1 bits (23), Expect = 0.022
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 46266 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 46207
Query: 544 tggaacc 550
|||||||
Sbjct: 46206 tggaacc 46200
>gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017696, whole
genome shotgun sequence
Length = 20538
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 3087 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 3028
Query: 544 tggaacc 550
|||||||
Sbjct: 3027 tggaacc 3021
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 906
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 439 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 498
Query: 544 tggaacc 550
|||||||
Sbjct: 499 tggaacc 505
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 134091 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 134032
Query: 544 tggaacc 550
|||||||
Sbjct: 134031 tggaacc 134025
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 499 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 290736 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 290787
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 520 gactaccacacctacaccatcatctggaacc 550
|||| ||| ||||||||||||||||||||||
Sbjct: 296564 gacttccatacctacaccatcatctggaacc 296594
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 10133125 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 10133184
Query: 544 tggaacc 550
|||||||
Sbjct: 10133185 tggaacc 10133191
Score = 46.1 bits (23), Expect = 0.022
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 10128385 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 10128444
Query: 544 tggaacc 550
|||||||
Sbjct: 10128445 tggaacc 10128451
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 7736097 gagcagcagttccgcctctggttcgaccccaccgccgacttccacacctactccatcgtc 7736038
Query: 544 tggaacc 550
|||||||
Sbjct: 7736037 tggaacc 7736031
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 499 ctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||| || ||| | || |||| ||| ||||||||||||||||||||||
Sbjct: 7892742 ctctggtttgatcccactgcagacttccatacctacaccatcatctggaacc 7892793
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 520 gactaccacacctacaccatcatctggaacc 550
|||| ||| ||||||||||||||||||||||
Sbjct: 7898570 gacttccatacctacaccatcatctggaacc 7898600
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 27831862 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 27831921
Query: 544 tggaacc 550
|||||||
Sbjct: 27831922 tggaacc 27831928
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 501 ctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
||||||||||||| ||| || |||||||| |||||||||| |||||||||
Sbjct: 12967261 ctggttcgaccccaccgacggctaccacaactacaccatcttctggaacc 12967310
Score = 46.1 bits (23), Expect = 0.022
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 27827122 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 27827181
Query: 544 tggaacc 550
|||||||
Sbjct: 27827182 tggaacc 27827188
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 393 cgacgagatcgacatggagttcatgggcaactcgagcgg 431
||||||||||||| | |||||| |||||||||| |||||
Sbjct: 12967153 cgacgagatcgacttcgagttcctgggcaactccagcgg 12967191
Score = 42.1 bits (21), Expect = 0.34
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 498 cctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||||||||||| | ||||||| ||| |||| ||||| |||||||||
Sbjct: 7141174 cctctggttcgaccccgctgccgacttccatgactactccatcctctggaacc 7141122
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 77.8 bits (39), Expect = 6e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct: 28754807 gagcagcagttcgtgctctggttcgaccccaccgccgacttccacacctactccatcctc 28754866
Query: 544 tggaacc 550
|||||||
Sbjct: 28754867 tggaacc 28754873
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 501 ctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
||||||||||||| ||| || |||||||| |||||||||| |||||||||
Sbjct: 13230512 ctggttcgaccccaccgacggctaccacaactacaccatcttctggaacc 13230561
Score = 46.1 bits (23), Expect = 0.022
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| |||||||||||||||| || || |||||||||| ||||||||
Sbjct: 28750067 gagcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatc 28750126
Query: 544 tggaacc 550
|||||||
Sbjct: 28750127 tggaacc 28750133
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 393 cgacgagatcgacatggagttcatgggcaactcgagcgg 431
||||||||||||| | |||||| |||||||||| |||||
Sbjct: 13230404 cgacgagatcgacttcgagttcctgggcaactccagcgg 13230442
Score = 42.1 bits (21), Expect = 0.34
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 498 cctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||||||||||||| | ||||||| ||| |||| ||||| |||||||||
Sbjct: 7156118 cctctggttcgaccccgctgccgacttccatgactactccatcctctggaacc 7156066
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full
insert sequence
Length = 1109
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 475 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 534
Query: 544 tgga 547
||||
Sbjct: 535 tgga 538
>gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010435, whole
genome shotgun sequence
Length = 5289
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 4599 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 4658
Query: 544 tgga 547
||||
Sbjct: 4659 tgga 4662
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 822
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 385 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 444
Query: 544 tgga 547
||||
Sbjct: 445 tgga 448
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
complete sequence
Length = 166804
Score = 71.9 bits (36), Expect = 4e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||
Sbjct: 150308 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 150249
Query: 544 tgga 547
||||
Sbjct: 150248 tgga 150245
Score = 46.1 bits (23), Expect = 0.022
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 393 cgacgagatcgacatggagttcatgggcaac 423
||||||||||||| |||||||| ||||||||
Sbjct: 141795 cgacgagatcgacctggagttcctgggcaac 141765
>gb|AQ861400.1|AQ861400 nbeb0016H04r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0016H04r, DNA sequence
Length = 772
Score = 63.9 bits (32), Expect = 9e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 484 gagcaccagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatc 543
||||| ||||||| ||||||||||||||| ||| ||||| |||||||||| |||| ||
Sbjct: 668 gagcagcagttcgtgctctggttcgaccccaccgncgacttccacacctactccattctc 727
Query: 544 tggaacc 550
|||||||
Sbjct: 728 tggaacc 734
>dbj|AK061126.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G12, full
insert sequence
Length = 1193
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 492 gttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||| ||||||||||||||||| ||||||||| |||| |||| ||||| |||||||||
Sbjct: 580 gttccacctctggttcgaccccaccgccgacttccaccactacgccatcctctggaacc 638
>dbj|AK104060.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G01, full
insert sequence
Length = 1186
Score = 61.9 bits (31), Expect = 4e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 492 gttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||| ||||||||||||||||| ||||||||| |||| |||| ||||| |||||||||
Sbjct: 573 gttccacctctggttcgaccccaccgccgacttccaccactacgccatcctctggaacc 631
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,066,142
Number of Sequences: 438736
Number of extensions: 1066142
Number of successful extensions: 58127
Number of sequences better than 0.5: 153
Number of HSP's better than 0.5 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53554
Number of HSP's gapped (non-prelim): 4571
length of query: 610
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 589
effective length of database: 2,791,206,460
effective search space: 1644020604940
effective search space used: 1644020604940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)