BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBJ24c04.pg.2.1
         (448 letters)

Database: Oryza_nucl_with_EST.fasta 
           438,736 sequences; 2,800,419,916 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AU165467.1|AU165467  AU165467 Rice panicle at flowering s...    42   0.25 

>gb|AU165467.1|AU165467 AU165467 Rice panicle at flowering stage Oryza sativa (japonica
           cultivar-group) cDNA clone E1271, mRNA sequence
          Length = 527

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 91/118 (77%)
 Strand = Plus / Minus

                                                                       
Query: 294 tccagttcgccgggatgatgtctttagcgatgacctnnntgccggactcgctggtgaggc 353
           |||||||  ||||||||| |||||| |||||||      ||||||||||| |||||| ||
Sbjct: 216 tccagttgaccgggatgacgtctttggcgatgaggctcttgccggactcggtggtgacgc 157

                                                                     
Query: 354 ggatagnnnaggggcccttgagngccttggcagggtccatcctccnnntggcgcccca 411
           | || |   ||||  ||||||| | | |||| | |||||||||||   ||||||||||
Sbjct: 156 gaatngagaagggtgccttgagtggcgtggcggtgtccatcctccagatggcgcccca 99



  Database: Oryza_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:41 PM
  Number of letters in database: 2,800,419,916
  Number of sequences in database:  438,736
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 449,456
Number of Sequences: 438736
Number of extensions: 449456
Number of successful extensions: 9869
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9868
Number of HSP's gapped (non-prelim): 1
length of query: 448
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 427
effective length of database: 2,791,206,460
effective search space: 1191845158420
effective search space used: 1191845158420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)