BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBE1h10.xg.2.1
(463 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
gb|AACV01009702.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
ref|XM_472408.1| Oryza sativa (japonica cultivar-group), p... 70 1e-009
ref|NT_107198.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-... 70 1e-009
emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromoso... 70 1e-009
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
dbj|AK072276.1| Oryza sativa (japonica cultivar-group) cDNA... 68 5e-009
gb|AACV01009704.1| Oryza sativa (japonica cultivar-group) c... 68 5e-009
ref|XM_472409.1| Oryza sativa (japonica cultivar-group), p... 68 5e-009
gb|AY578159.1| Oryza sativa (japonica cultivar-group) cell-... 68 5e-009
gb|AU058270.1|AU058270 AU058270 Oryza sativa Nipponbare imm... 66 2e-008
gb|CB656699.1|CB656699 OSJNEc11F14.r OSJNEc Oryza sativa (j... 66 2e-008
gb|CB656705.1|CB656705 OSJNEc11F17.r OSJNEc Oryza sativa (j... 66 2e-008
gb|CB656731.1|CB656731 OSJNEc11G13.r OSJNEc Oryza sativa (j... 66 2e-008
gb|CB656759.1|CB656759 OSJNEc11H12.r OSJNEc Oryza sativa (j... 66 2e-008
gb|CB665439.1|CB665439 OSJNEd11N18.f OSJNEd Oryza sativa (j... 66 2e-008
gb|CB665440.1|CB665440 OSJNEd11N18.r OSJNEd Oryza sativa (j... 66 2e-008
dbj|AB073749.1| Oryza sativa (japonica cultivar-group) OsCI... 66 2e-008
gb|AY578158.1| Oryza sativa (japonica cultivar-group) cell-... 66 2e-008
gb|CB670406.1|CB670406 OSJNEe03H08.r OSJNEe Oryza sativa (j... 64 7e-008
gb|CB647638.1|CB647638 OSJNEb10K09.f OSJNEb Oryza sativa (j... 58 4e-006
dbj|AK121403.1| Oryza sativa (japonica cultivar-group) cDNA... 58 4e-006
gb|AQ509935.1|AQ509935 nbxb0094F09r CUGI Rice BAC Library O... 52 3e-004
gb|CB638672.1|CB638672 OSJNEa07D22.r OSJNEa Oryza sativa (j... 52 3e-004
gb|CB647639.1|CB647639 OSJNEb10K09.r OSJNEb Oryza sativa (j... 52 3e-004
gb|CB656697.1|CB656697 OSJNEc11F13.r OSJNEc Oryza sativa (j... 52 3e-004
gb|CB656757.1|CB656757 OSJNEc11H11.r OSJNEc Oryza sativa (j... 52 3e-004
gb|CB662771.1|CB662771 OSJNEd07B16.r OSJNEd Oryza sativa (j... 52 3e-004
dbj|AP004156.3| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
dbj|AP005798.3| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AACV01004580.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AU091974.1|AU091974 AU091974 Rice immature leaf includin... 44 0.065
>dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009M11, full
insert sequence
Length = 2289
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 1652 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 1711
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 1712 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 1763
Score = 42.1 bits (21), Expect = 0.26
Identities = 35/41 (85%)
Strand = Plus / Plus
Query: 125 tacaagccgaccttcgnnnncttcgtcgacgccgacatctc 165
|||| ||||||||||| ||||||||||| |||||||||
Sbjct: 1562 tacaggccgaccttcgccggcttcgtcgacgtcgacatctc 1602
>gb|AACV01009702.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009702, whole
genome shotgun sequence
Length = 11577
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 7062 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 7003
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 7002 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 6951
>ref|XM_472408.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1752
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 1582 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 1641
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 1642 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 1693
>ref|NT_107198.1| Oryza sativa (japonica cultivar-group)
Length = 632744
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 154231 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 154290
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 154291 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 154342
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 166138 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 166197
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 166198 atcggcaagaacgcgcgcctttacgttttcaataacgg 166235
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 165596 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 165635
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 10204561 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 10204620
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 10204621 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 10204672
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 10218098 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 10218157
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 10218158 atcggcaagaacgcgcgcctttacgttttcaataacgg 10218195
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 10217556 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 10217595
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 17551923 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 17551982
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 17551983 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 17552034
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 17565460 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 17565519
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 17565520 atcggcaagaacgcgcgcctttacgttttcaataacgg 17565557
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 17564918 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 17564957
>gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 3 mRNA,
complete cds
Length = 1911
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 1618 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 1677
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 1678 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 1729
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13,
complete sequence
Length = 113960
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 37018 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 37077
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 37078 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 37129
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 48925 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 48984
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 48985 atcggcaagaacgcgcgcctttacgttttcaataacgg 49022
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 48383 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 48422
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 69.9 bits (35), Expect = 1e-009
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| ||| | |||||||||||||||||| | ||||||||||| | |||
Sbjct: 20423598 gagagcttcggggcgcgcggcaagacgtgcatcctgacgagggtgtacccgaggaaagcc 20423657
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacggcgagnnngacgtca 323
||||| | ||||| ||||||| ||| ||||||||||||||| |||||||
Sbjct: 20423658 gtcggcgacgacgcgcacctcttcgtcttcaacaacggcgagtcggacgtca 20423709
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 20435505 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 20435564
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 20435565 atcggcaagaacgcgcgcctttacgttttcaataacgg 20435602
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 20434963 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 20435002
>dbj|AK072276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010O04, full
insert sequence
Length = 2089
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 1679 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 1738
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 1739 atcggcaagaacgcgcgcctttacgttttcaataacgg 1776
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 1531 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 1570
>gb|AACV01009704.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009704, whole
genome shotgun sequence
Length = 16702
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 12046 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 11987
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 11986 atcggcaagaacgcgcgcctttacgttttcaataacgg 11949
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 12588 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 12549
>ref|XM_472409.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1788
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 1618 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 1677
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 1678 atcggcaagaacgcgcgcctttacgttttcaataacgg 1715
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 1470 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 1509
>gb|AY578159.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 2 mRNA,
complete cds
Length = 1995
Score = 67.9 bits (34), Expect = 5e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 271
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 1672 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 1731
Query: 272 gtcgggaaggacgctcacctctacgttttcaacaacgg 309
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 1732 atcggcaagaacgcgcgcctttacgttttcaataacgg 1769
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 cggcaagcccaaggtgctcatgtgcaccgaccccaccaag 103
|||||||||| |||||||||||||||||||||||||||
Sbjct: 1524 cggcaagcccgtcgtgctcatgtgcaccgaccccaccaag 1563
>gb|AU058270.1|AU058270 AU058270 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50295_1A, mRNA
sequence
Length = 467
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Plus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 111 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 170
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 171 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 230
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 231 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 280
>gb|CB656699.1|CB656699 OSJNEc11F14.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11F14 3', mRNA sequence
Length = 811
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Minus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 696 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 637
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 636 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 577
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 576 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 527
>gb|CB656705.1|CB656705 OSJNEc11F17.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11F17 3', mRNA sequence
Length = 810
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Minus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 687 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 628
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 627 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 568
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 567 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 518
>gb|CB656731.1|CB656731 OSJNEc11G13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11G13 3', mRNA sequence
Length = 802
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Minus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 737 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 678
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 677 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 618
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 617 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 568
>gb|CB656759.1|CB656759 OSJNEc11H12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11H12 3', mRNA sequence
Length = 782
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Minus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 687 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 628
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 627 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 568
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 567 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 518
>gb|CB665439.1|CB665439 OSJNEd11N18.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11N18 5', mRNA sequence
Length = 783
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Plus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 521 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 580
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 581 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 640
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 641 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 690
>gb|CB665440.1|CB665440 OSJNEd11N18.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11N18 3', mRNA sequence
Length = 771
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Minus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 691 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 632
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 631 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 572
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 571 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 522
>dbj|AB073749.1| Oryza sativa (japonica cultivar-group) OsCIN1 mRNA for cell wall
invertase, complete cds
Length = 2203
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Plus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 1494 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 1553
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 1554 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 1613
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 1614 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 1663
>gb|AY578158.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 1 mRNA,
complete cds
Length = 2129
Score = 65.9 bits (33), Expect = 2e-008
Identities = 131/170 (77%)
Strand = Plus / Plus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| |||||||| |||||||| || ||
Sbjct: 1449 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaactttt 1508
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 1509 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 1568
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 1569 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 1618
>gb|CB670406.1|CB670406 OSJNEe03H08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03H08 3', mRNA sequence
Length = 747
Score = 63.9 bits (32), Expect = 7e-008
Identities = 130/169 (76%)
Strand = Plus / Minus
Query: 81 tcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttcg 140
|||||||||||||||| |||||| ||||||| |||||||| |||||||| || || |
Sbjct: 657 tcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagccaacttttg 598
Query: 141 nnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgatc 200
||||||||| ||||||||||| ||| || | ||||||||||| || |
Sbjct: 597 ccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgacc 538
Query: 201 ggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 537 gttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 489
>gb|CB647638.1|CB647638 OSJNEb10K09.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10K09 5', mRNA sequence
Length = 731
Score = 58.0 bits (29), Expect = 4e-006
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagcc 132
||||||||||||||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 669 ctcatgtgcaccgaccctaccaagtcttctcttagcccggatctctacaagcc 721
>dbj|AK121403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A09, full
insert sequence
Length = 2103
Score = 58.0 bits (29), Expect = 4e-006
Identities = 130/170 (76%)
Strand = Plus / Plus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttc 139
||||||||||||||||| |||||| ||||||| | |||||| |||||||| || ||
Sbjct: 1499 ctcatgtgcaccgaccctaccaagtcttctcttagccaggatctctacaagccaactttt 1558
Query: 140 gnnnncttcgtcgacgccgacatctcgannnnnnnnatcacccttagaagcttgatcgat 199
| ||||||||| ||||||||||| ||| || | ||||||||||| ||
Sbjct: 1559 gccgggttcgtcgacaccgacatctcgtccgggaagatctccttgagaagcttgattgac 1618
Query: 200 cggtccnnngtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|| || || |||||||||||||| || |||||||| |||||||||||
Sbjct: 1619 cgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 1668
>gb|AQ509935.1|AQ509935 nbxb0094F09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0094F09r, DNA sequence
Length = 595
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 157 gagagcttcggcgccgggggcaagacctgcatcctgtc 194
>gb|CB638672.1|CB638672 OSJNEa07D22.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa07D22 3', mRNA sequence
Length = 579
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 556 gagagcttcggcgccgggggcaagacctgcatcctgtc 519
>gb|CB647639.1|CB647639 OSJNEb10K09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10K09 3', mRNA sequence
Length = 659
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 540 gagagcttcggcgccgggggcaagacctgcatcctgtc 503
>gb|CB656697.1|CB656697 OSJNEc11F13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11F13 3', mRNA sequence
Length = 760
Score = 52.0 bits (26), Expect = 3e-004
Identities = 69/86 (80%)
Strand = Plus / Minus
Query: 81 tcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagccgaccttcg 140
|||||||||||||||| |||||| || |||| |||||||| |||||||| || || |
Sbjct: 693 tcatgtgcaccgaccctaccaagtcttctgttagcccggatctctacaagccaacttttg 634
Query: 141 nnnncttcgtcgacgccgacatctcg 166
||||||||| |||||||||||
Sbjct: 633 ccgggttcgtcgacaccgacatctcg 608
>gb|CB656757.1|CB656757 OSJNEc11H11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11H11 3', mRNA sequence
Length = 722
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 561 gagagcttcggcgccgggggcaagacctgcatcctgtc 524
Score = 50.1 bits (25), Expect = 0.001
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 80 ctcatgtgcaccgaccccaccaagnnnnctcttagtccggatctgtacaagcc 132
||||||||||||||||| |||||| || |||| |||||||| ||||||||
Sbjct: 693 ctcatgtgcaccgaccctaccaagtcttcttttagcccggatctctacaagcc 641
>gb|CB662771.1|CB662771 OSJNEd07B16.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07B16 3', mRNA sequence
Length = 776
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 555 gagagcttcggcgccgggggcaagacctgcatcctgtc 518
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G07
Length = 149119
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 14635 gagagcttcggcgccgggggcaagacctgcatcctgtc 14672
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1136H02
Length = 145086
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 62842 gagagcttcggcgccgggggcaagacctgcatcctgtc 62879
>gb|AACV01004580.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004580, whole
genome shotgun sequence
Length = 8396
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 3697 gagagcttcggcgccgggggcaagacctgcatcctgtc 3734
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 890326 gagagcttcggcgccgggggcaagacctgcatcctgtc 890363
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 6099413 gagagcttcggcgccgggggcaagacctgcatcctgtc 6099450
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 19552477 gagagcttcggcgccgggggcaagacctgcatcctgtc 19552514
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 212 gagagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||||||||| || |||||||| |||||||||||
Sbjct: 19706084 gagagcttcggcgccgggggcaagacctgcatcctgtc 19706121
>gb|AU091974.1|AU091974 AU091974 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50295, mRNA sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.065
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 213 agagcttcggcgcgggaggcaagacgtgcatcctgtc 249
|||||||| |||| || |||||||| |||||||||||
Sbjct: 1 agagcttcngcgccgggggcaagacctgcatcctgtc 37
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 550,448
Number of Sequences: 438736
Number of extensions: 550448
Number of successful extensions: 17532
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17204
Number of HSP's gapped (non-prelim): 307
length of query: 463
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 442
effective length of database: 2,791,206,460
effective search space: 1233713255320
effective search space used: 1233713255320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)