BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070384.1| Oryza sativa (japonica cultivar-group) cDNA... 620 e-175
dbj|AK109052.1| Oryza sativa (japonica cultivar-group) cDNA... 391 e-106
gb|CB647580.1|CB647580 OSJNEb10J03.f OSJNEb Oryza sativa (j... 329 2e-087
ref|NM_197081.1| Oryza sativa (japonica cultivar-group) put... 321 5e-085
dbj|AK106675.1| Oryza sativa (japonica cultivar-group) cDNA... 180 1e-042
gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C1... 170 1e-039
gb|AACV01021825.1| Oryza sativa (japonica cultivar-group) c... 170 1e-039
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 170 1e-039
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 170 1e-039
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
gb|CB661139.1|CB661139 OSJNEd03J21.f OSJNEd Oryza sativa (j... 155 6e-035
gb|D46456.1|D46456 RICS11148A Rice green shoot Oryza sativa... 121 9e-025
gb|CX056250.1|CX056250 TA-CAT4 Rice cold stress germination... 66 4e-008
>dbj|AK070384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052E08, full
insert sequence
Length = 1010
Score = 620 bits (313), Expect = e-175
Identities = 594/687 (86%), Gaps = 3/687 (0%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 78 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 137
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 138 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 197
Query: 249 agagggcctctccgct---cccgaccgcctcctcaccgtggaactggccgctctcctgca 305
||||||||| | |||||||||||||||| |||||| | ||||| ||||||||
Sbjct: 198 gctcggcctctcctcctcccccgaccgcctcctcatcgtggagatagccgcgctcctgca 257
Query: 306 cgacgttggagattacaagtataccaagaacaatgtggaggatatgagcgtcgttgagat 365
||| | || ||||||||||| |||||| |||||| |||||||||||| |||| ||||
Sbjct: 258 tgacatcggtgattacaagtacaccaaggacaatgctgaggatatgagcatcgtggagag 317
Query: 366 gtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattattaa 425
||||||| ||||||| | | |||| | ||||| | ||| ||||| ||||| || |||||
Sbjct: 318 gtttcttgaagaggtggaactggagcagggccagagggaggaaattgtggcgatcattaa 377
Query: 426 ggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatt 485
||||||||| |||||||||||||||||||| || ||| |||||||||| |||||||| ||
Sbjct: 378 ggggatgggattcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtt 437
Query: 486 tgcaattgtacaagatgcagatcgcctggatgcaattggggcaattggtattgcaagatg 545
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 438 tgcaattgtacaagatgcagatcgtcttgatgcaattggtgcaattggtattgcaagatg 497
Query: 546 ttttacatatggtggtagcaagaacagcgcattacatgatcctagaattctgccacgtga 605
|||||| |||||||| |||||||| | | |||| |||||||||| || ||||| |||||
Sbjct: 498 ttttacgtatggtgggagcaagaaaaacacattgcatgatcctaagatactgccgcgtga 557
Query: 606 tagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaatcattt 665
|| ||||| ||||| || |||||||||||||| || || ||||||||||| ||||||||
Sbjct: 558 taatttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatcaattaatcattt 617
Query: 666 tcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaaaggagagc 725
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 618 ccatgagaagctatttaagttgaaggacatgatgaagacagaggccgggaaaaagagagc 677
Query: 726 tgagaaaaggcataggttcatggaggaatttgtggctgaattctacgaagagtggagtgg 785
||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 678 agagaaaaggcacaagttcatggaggactttgtggctgaattctatgaagagtggagtgg 737
Query: 786 cagggcttgaggttgaacaaccaggtt 812
||| |||||| ||||| ||||||||||
Sbjct: 738 cagagcttgaagttgaccaaccaggtt 764
>dbj|AK109052.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E06, full
insert sequence
Length = 1448
Score = 391 bits (197), Expect = e-106
Identities = 311/349 (89%)
Strand = Plus / Plus
Query: 464 ttgttgagcccactcttgaatttgcaattgtacaagatgcagatcgcctggatgcaattg 523
|||||||||| |||||||| ||||||||||||||||||| |||||| || ||||||||||
Sbjct: 4 ttgttgagcctactcttgagtttgcaattgtacaagatgtagatcgtcttgatgcaattg 63
Query: 524 gggcaattggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatg 583
| |||||||||||||||||||||||||| |||||||| |||||||| | | |||| ||||
Sbjct: 64 gtgcaattggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatg 123
Query: 584 atcctagaattctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagaga 643
|||||| || ||||| ||||||| ||||| ||||| || |||||||||||||| || |
Sbjct: 124 atcctaagatactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaa 183
Query: 644 agcagacatcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaaga 703
| ||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 184 aacagacatcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaaga 243
Query: 704 cagaggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctg 763
||||||||||||||| |||||| ||||||||||| | |||||||||||| ||||||||||
Sbjct: 244 cagaggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctg 303
Query: 764 aattctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
||||||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 304 aattctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 352
>gb|CB647580.1|CB647580 OSJNEb10J03.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10J03 5', mRNA sequence
Length = 774
Score = 329 bits (166), Expect = 2e-087
Identities = 310/358 (86%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 417 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 476
Query: 403 gatgaaatagtggcaattattaaggggatggggttcaaaaatgaagtttcaaataaatct 462
|| ||||| ||||| || |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 477 gaggaaattgtggcgatcattaaggggatgggattcaaaaatgaagtttcaaagaagtct 536
Query: 463 attgttgagcccactcttgaatttgcaattgtacaagatgcagatcgcctggatgcaatt 522
|||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct: 537 gttgttgagcctactcttgagtttgcaattgtacaagatgcagatcgtcttgatgcaatt 596
Query: 523 ggggcaattggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacat 582
|| |||||||||||||||||||||||||| |||||||| |||||||| | | |||| |||
Sbjct: 597 ggtgcaattggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcat 656
Query: 583 gatcctagaattctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagag 642
||||||| || ||||| ||||||| ||||| ||||| || |||||||||||||| ||
Sbjct: 657 gatcctaagatactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaa 716
Query: 643 aagcagacatcaatcaatcattttcatgagaagctttttaaactgaaggacatgatga 700
|| ||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 717 aaacagacatcaattaatcatttccatgagaagctatttaagttgaaggacatgatga 774
>ref|NM_197081.1| Oryza sativa (japonica cultivar-group) putative HD domain protein
(OSJNBa0029C15.4), mRNA
Length = 1131
Score = 321 bits (162), Expect = 5e-085
Identities = 347/408 (85%), Gaps = 3/408 (0%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 6 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 65
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 66 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 125
Query: 249 agagggcctctccgct---cccgaccgcctcctcaccgtggaactggccgctctcctgca 305
||||||||| | |||||||||||||||| |||||| | ||||| ||||||||
Sbjct: 126 gctcggcctctcctcctcccccgaccgcctcctcatcgtggagatagccgcgctcctgca 185
Query: 306 cgacgttggagattacaagtataccaagaacaatgtggaggatatgagcgtcgttgagat 365
||| | || ||||||||||| |||||| |||||| |||||||||||| |||| ||||
Sbjct: 186 tgacatcggtgattacaagtacaccaaggacaatgctgaggatatgagcatcgtggagag 245
Query: 366 gtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattattaa 425
||||||| ||||||| | | |||| | ||||| | ||| ||||| ||||| || |||||
Sbjct: 246 gtttcttgaagaggtggaactggagcagggccagagggaggaaattgtggcgatcattaa 305
Query: 426 ggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatt 485
||||||||| |||||||||||||||||||| || ||| |||||||||| |||||||| ||
Sbjct: 306 ggggatgggattcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtt 365
Query: 486 tgcaattgtacaagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 366 tgcaattgtacaagatgcagatcgtcttgatgcaattggtgcaattgg 413
Score = 305 bits (154), Expect = 3e-080
Identities = 250/282 (88%)
Strand = Plus / Plus
Query: 531 tggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctag 590
||||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 498 tggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaa 557
Query: 591 aattctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagac 650
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || |||||
Sbjct: 558 gatactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagac 617
Query: 651 atcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagaggc 710
|||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 618 atcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagaggc 677
Query: 711 cgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaattcta 770
|||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||||||
Sbjct: 678 cgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaattcta 737
Query: 771 cgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 738 tgaagagtggagtggcagagcttgaagttgaccaaccaggtt 779
>dbj|AK106675.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A07, full
insert sequence
Length = 1734
Score = 180 bits (91), Expect = 1e-042
Identities = 166/191 (86%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 275 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 334
Query: 403 gatgaaatagtggcaattattaaggggatggggttcaaaaatgaagtttcaaataaatct 462
|| ||||| ||||| || |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 335 gaggaaattgtggcgatcattaaggggatgggattcaaaaatgaagtttcaaagaagtct 394
Query: 463 attgttgagcccactcttgaatttgcaattgtacaagatgcagatcgcctggatgcaatt 522
|||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct: 395 gttgttgagcctactcttgagtttgcaattgtacaagatgcagatcgtcttgatgcaatt 454
Query: 523 ggggcaattgg 533
|| ||||||||
Sbjct: 455 ggtgcaattgg 465
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 1230 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 1289
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 1290 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 1349
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1350 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 1407
Score = 131 bits (66), Expect = 9e-028
Identities = 152/180 (84%), Gaps = 3/180 (1%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 77 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 136
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 137 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 196
Query: 249 agagggcct---ctccgctcccgaccgcctcctcaccgtggaactggccgctctcctgca 305
||||| |||| | |||||||||||||||| |||||| | ||||| ||||||||
Sbjct: 197 gctcggcctctcctcctcccccgaccgcctcctcatcgtggagatagccgcgctcctgca 256
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
sequence
Length = 148816
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Minus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 57926 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 57867
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 57866 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 57807
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 57806 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 57749
Score = 139 bits (70), Expect = 4e-030
Identities = 97/106 (91%)
Strand = Plus / Minus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct: 57307 aggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaat 57248
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 57247 tctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 57202
Score = 131 bits (66), Expect = 9e-028
Identities = 90/98 (91%)
Strand = Plus / Minus
Query: 436 ttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaattgta 495
|||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||
Sbjct: 58788 ttcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaattgta 58729
Query: 496 caagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 58728 caagatgcagatcgtcttgatgcaattggtgcaattgg 58691
Score = 127 bits (64), Expect = 1e-026
Identities = 106/120 (88%)
Strand = Plus / Minus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 60604 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 60545
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 60544 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 60485
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 59126 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 59067
Query: 403 gatgaaatagtggcaattattaaggggatggg 434
|| ||||| ||||| || ||||||||||||||
Sbjct: 59066 gaggaaattgtggcgatcattaaggggatggg 59035
>gb|AACV01021825.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021825, whole
genome shotgun sequence
Length = 20068
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 13547 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 13606
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 13607 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 13666
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13667 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 13724
Score = 139 bits (70), Expect = 4e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct: 14166 aggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaat 14225
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 14226 tctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 14271
Score = 131 bits (66), Expect = 9e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 436 ttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaattgta 495
|||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||
Sbjct: 12685 ttcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaattgta 12744
Query: 496 caagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 12745 caagatgcagatcgtcttgatgcaattggtgcaattgg 12782
Score = 127 bits (64), Expect = 1e-026
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 10871 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 10930
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 10931 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 10990
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 12349 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 12408
Query: 403 gatgaaatagtggcaattattaaggggatggg 434
|| ||||| ||||| || ||||||||||||||
Sbjct: 12409 gaggaaattgtggcgatcattaaggggatggg 12440
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 4606546 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 4606605
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 4606606 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 4606665
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 4606666 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 4606723
Score = 139 bits (70), Expect = 4e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct: 4607165 aggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaat 4607224
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 4607225 tctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 4607270
Score = 131 bits (66), Expect = 9e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 436 ttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaattgta 495
|||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||
Sbjct: 4605684 ttcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaattgta 4605743
Query: 496 caagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 4605744 caagatgcagatcgtcttgatgcaattggtgcaattgg 4605781
Score = 127 bits (64), Expect = 1e-026
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 4603868 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 4603927
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 4603928 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 4603987
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 4605346 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 4605405
Query: 403 gatgaaatagtggcaattattaaggggatggg 434
|| ||||| ||||| || ||||||||||||||
Sbjct: 4605406 gaggaaattgtggcgatcattaaggggatggg 4605437
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 5818889 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 5818948
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 5818949 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 5819008
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 5819009 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 5819066
Score = 139 bits (70), Expect = 4e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct: 5819508 aggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaat 5819567
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 5819568 tctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 5819613
Score = 131 bits (66), Expect = 9e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 436 ttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaattgta 495
|||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||
Sbjct: 5818027 ttcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaattgta 5818086
Query: 496 caagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 5818087 caagatgcagatcgtcttgatgcaattggtgcaattgg 5818124
Score = 127 bits (64), Expect = 1e-026
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 5816213 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 5816272
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 5816273 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 5816332
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 5817691 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 5817750
Query: 403 gatgaaatagtggcaattattaaggggatggg 434
|| ||||| ||||| || ||||||||||||||
Sbjct: 5817751 gaggaaattgtggcgatcattaaggggatggg 5817782
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 16684683 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 16684742
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 16684743 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 16684802
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 16684803 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 16684860
Score = 139 bits (70), Expect = 4e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct: 16685302 aggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaat 16685361
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 16685362 tctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 16685407
Score = 131 bits (66), Expect = 9e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 436 ttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaattgta 495
|||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||
Sbjct: 16683821 ttcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaattgta 16683880
Query: 496 caagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 16683881 caagatgcagatcgtcttgatgcaattggtgcaattgg 16683918
Score = 127 bits (64), Expect = 1e-026
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 16682007 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 16682066
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 16682067 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 16682126
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 16683485 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 16683544
Query: 403 gatgaaatagtggcaattattaaggggatggg 434
|| ||||| ||||| || ||||||||||||||
Sbjct: 16683545 gaggaaattgtggcgatcattaaggggatggg 16683576
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 17874115 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 17874174
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 17874175 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 17874234
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 17874235 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 17874292
Score = 139 bits (70), Expect = 4e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct: 17874734 aggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaat 17874793
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 17874794 tctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 17874839
Score = 131 bits (66), Expect = 9e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 436 ttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaattgta 495
|||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||
Sbjct: 17873253 ttcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaattgta 17873312
Query: 496 caagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 17873313 caagatgcagatcgtcttgatgcaattggtgcaattgg 17873350
Score = 127 bits (64), Expect = 1e-026
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 17871437 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 17871496
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 17871497 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 17871556
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 17872915 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 17872974
Query: 403 gatgaaatagtggcaattattaaggggatggg 434
|| ||||| ||||| || ||||||||||||||
Sbjct: 17872975 gaggaaattgtggcgatcattaaggggatggg 17873006
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 170 bits (86), Expect = 1e-039
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
|||||||||||||||||||| |||||||| |||||||| | | |||| ||||||||||
Sbjct: 17883368 ggtattgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaag 17883427
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|| ||||| ||||||| ||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 17883428 atactgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagaca 17883487
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 17883488 tcaattaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 17883545
Score = 139 bits (70), Expect = 4e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||||||||||| |||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct: 17883987 aggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgtggctgaat 17884046
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 17884047 tctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 17884092
Score = 131 bits (66), Expect = 9e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 436 ttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaattgta 495
|||||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||
Sbjct: 17882506 ttcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaattgta 17882565
Query: 496 caagatgcagatcgcctggatgcaattggggcaattgg 533
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 17882566 caagatgcagatcgtcttgatgcaattggtgcaattgg 17882603
Score = 127 bits (64), Expect = 1e-026
Identities = 106/120 (88%)
Strand = Plus / Plus
Query: 129 ggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgc 188
|||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 17880690 ggcggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgc 17880749
Query: 189 ctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccga 248
||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 17880750 ctcccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccga 17880809
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 343 gaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaag 402
|||||||||||| |||| |||| ||||||| ||||||| | | |||| | ||||| | |
Sbjct: 17882168 gaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggccagagg 17882227
Query: 403 gatgaaatagtggcaattattaaggggatggg 434
|| ||||| ||||| || ||||||||||||||
Sbjct: 17882228 gaggaaattgtggcgatcattaaggggatggg 17882259
>gb|CB661139.1|CB661139 OSJNEd03J21.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03J21 5', mRNA sequence
Length = 835
Score = 155 bits (78), Expect = 6e-035
Identities = 105/114 (92%)
Strand = Plus / Plus
Query: 699 gaagacagaggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgt 758
|||||||||||||||||||| |||||| ||||||||||| | |||||||||||| |||||
Sbjct: 1 gaagacagaggccgggaaaaagagagcagagaaaaggcacaagttcatggaggactttgt 60
Query: 759 ggctgaattctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
|||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 61 ggctgaattctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 114
>gb|D46456.1|D46456 RICS11148A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 449
Score = 121 bits (61), Expect = 9e-025
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 720 gagagctgagaaaaggcataggttcatggaggaatttgtggctgaattctacgaagagtg 779
|||||| ||||||||||| | |||||||||||| ||||||||||||||||| ||||||||
Sbjct: 5 gagagcagagaaaaggcacaagttcatggaggactttgtggctgaattctatgaagagtg 64
Query: 780 gagtggcagggcttgaggttgaacaaccaggtt 812
||||||||| |||||| ||||| ||||||||||
Sbjct: 65 gagtggcagagcttgaagttgaccaaccaggtt 97
>gb|CX056250.1|CX056250 TA-CAT4 Rice cold stress germination cDNA-AFLP Oryza sativa
(japonica cultivar-group) cDNA clone TA-CAT4 5' similar
to Drought stress (root) O. sativa cDNA clone
NRS2R_1_N20 3, mRNA sequence
Length = 266
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 764 aattctacgaagagtggagtggcagggcttgaggttgaacaaccaggtt 812
||||||| ||||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 98 aattctatgaagagtggagtggcagagcttgaagttgaccaaccaggtt 146
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,368,485
Number of Sequences: 438736
Number of extensions: 2368485
Number of successful extensions: 16299
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16089
Number of HSP's gapped (non-prelim): 210
length of query: 1105
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1084
effective length of database: 2,791,206,460
effective search space: 3025667802640
effective search space used: 3025667802640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)