BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBB9c12.pg.2.1
(545 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106302.1| Oryza sativa (japonica cultivar-group) cDNA... 113 1e-022
ref|XM_474835.1| Oryza sativa (japonica cultivar-group), p... 113 1e-022
ref|XM_474840.1| Oryza sativa (japonica cultivar-group), p... 113 1e-022
gb|AACV01008722.1| Oryza sativa (japonica cultivar-group) c... 109 2e-021
gb|AACV01008733.1| Oryza sativa (japonica cultivar-group) c... 109 2e-021
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 109 2e-021
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 109 2e-021
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 109 2e-021
emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromoso... 109 2e-021
emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromoso... 109 2e-021
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 109 2e-021
gb|CF317485.1|CF317485 HD--07-D05.g1 OsHDAC1-overexpressing... 105 2e-020
dbj|AK103242.1| Oryza sativa (japonica cultivar-group) cDNA... 92 4e-016
dbj|AK105967.1| Oryza sativa (japonica cultivar-group) cDNA... 92 4e-016
ref|XM_474841.1| Oryza sativa (japonica cultivar-group), p... 92 4e-016
gb|CL518352.1|CL518352 SAE8F05 Flanking Sequence Tag of Ory... 82 4e-013
gb|AACV01006947.1| Oryza sativa (japonica cultivar-group) c... 82 4e-013
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 82 4e-013
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 82 4e-013
gb|CB672602.1|CB672602 OSJNEe06L11.r OSJNEe Oryza sativa (j... 78 6e-012
gb|AACV01008736.1| Oryza sativa (japonica cultivar-group) c... 74 9e-011
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 72 3e-010
dbj|AK110892.1| Oryza sativa (japonica cultivar-group) cDNA... 68 5e-009
ref|XM_474839.1| Oryza sativa (japonica cultivar-group), p... 68 5e-009
ref|XM_474826.1| Oryza sativa (japonica cultivar-group), p... 60 1e-006
gb|AACV01008725.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
dbj|AK109506.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
dbj|AK110950.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
ref|XM_474838.1| Oryza sativa (japonica cultivar-group), p... 52 3e-004
gb|CF314166.1|CF314166 HD--02-J11.g1 OsHDAC1-overexpressing... 48 0.005
gb|CF320817.1|CF320817 HD--11-N12.g1 OsHDAC1-overexpressing... 48 0.005
>dbj|AK106302.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C06, full
insert sequence
Length = 1842
Score = 113 bits (57), Expect = 1e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 131 tgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacattgcgga 190
|||||||||||||| || || || || || || |||||||||||||| | || || |||
Sbjct: 1088 tgcccccagctggaggtgcttgctcacaaggccacaggttgtttcttgtcgcactgtgga 1147
Query: 191 tggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacactgg 250
||||||||||||||||| |||||||||||||| || || | | |||||| ||||| |||
Sbjct: 1148 tggaactcgacattggaggcaattgttaatggcgtaccgcttgtggcaatgccacattgg 1207
Query: 251 gcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccgagtg 310
|| ||||| || ||||| ||||| ||| |||||||| |||||||| |||| || ||||||
Sbjct: 1208 gctgaccaaccaaccatttcaaagtatgtggagagcttgtggggcatgggcgtgcgagtg 1267
Query: 311 c 311
|
Sbjct: 1268 c 1268
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 1397 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 1452
>ref|XM_474835.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 990
Score = 113 bits (57), Expect = 1e-022
Identities = 180/221 (81%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 490 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 549
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 550 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 609
Query: 125 tcttggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacat 184
||||||||||||||||| || || || | || ||||| |||||||||||||| || ||
Sbjct: 610 tcttggtgcccccagctcgaggtcttatctcacaaagccacaggttgtttcttaactcac 669
Query: 185 tgcggatggaactcgacattggaagcaattgttaatggtgt 225
|| ||||||||||| ||| ||||||||||||| ||||||
Sbjct: 670 tgtggatggaactcaacaacagaagcaattgttactggtgt 710
>ref|XM_474840.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1401
Score = 113 bits (57), Expect = 1e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 131 tgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacattgcgga 190
|||||||||||||| || || || || || || |||||||||||||| | || || |||
Sbjct: 1030 tgcccccagctggaggtgcttgctcacaaggccacaggttgtttcttgtcgcactgtgga 1089
Query: 191 tggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacactgg 250
||||||||||||||||| |||||||||||||| || || | | |||||| ||||| |||
Sbjct: 1090 tggaactcgacattggaggcaattgttaatggcgtaccgcttgtggcaatgccacattgg 1149
Query: 251 gcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccgagtg 310
|| ||||| || ||||| ||||| ||| |||||||| |||||||| |||| || ||||||
Sbjct: 1150 gctgaccaaccaaccatttcaaagtatgtggagagcttgtggggcatgggcgtgcgagtg 1209
Query: 311 c 311
|
Sbjct: 1210 c 1210
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 1339 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 1394
>gb|AACV01008722.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008722, whole
genome shotgun sequence
Length = 11208
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| |||||
Sbjct: 2944 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccacat 2885
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
| ||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 2884 ttggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 2825
Query: 308 gtg 310
|||
Sbjct: 2824 gtg 2822
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 3467 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 3414
Score = 46.1 bits (23), Expect = 0.020
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| ||||| || |||| |||||| || ||||||||||||
Sbjct: 6865 caggttgtttcttgacacactgtggatagaactccacgatggaagcaattg 6815
>gb|AACV01008733.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008733, whole
genome shotgun sequence
Length = 18530
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| ||| |
Sbjct: 10604 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccatat 10545
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
||||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 10544 tgggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 10485
Query: 308 gtg 310
|||
Sbjct: 10484 gtg 10482
Score = 99.6 bits (50), Expect = 2e-018
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 17615 aggttgtttcttgtcgcactgtggatggaactcgacattggaggcaattgttaatggcgt 17556
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 17555 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 17496
Query: 286 catgtggggcttgggtgtccgagtgc 311
| |||||||| |||| || |||||||
Sbjct: 17495 cttgtggggcatgggcgtgcgagtgc 17470
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| || ||||| |||||||||||||| ||||||||||||
Sbjct: 14217 caggttgtttcttgacgcattgtggatggaactcgacgatggaagcaattg 14167
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 11127 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 11074
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 17341 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 17286
>ref|NT_107203.1| Oryza sativa (japonica cultivar-group)
Length = 2359875
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| ||| |
Sbjct: 1813304 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccatat 1813245
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
||||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 1813244 tgggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 1813185
Query: 308 gtg 310
|||
Sbjct: 1813184 gtg 1813182
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| |||||
Sbjct: 1683997 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccacat 1683938
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
| ||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 1683937 ttggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 1683878
Query: 308 gtg 310
|||
Sbjct: 1683877 gtg 1683875
Score = 99.6 bits (50), Expect = 2e-018
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 1820316 aggttgtttcttgtcgcactgtggatggaactcgacattggaggcaattgttaatggcgt 1820257
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 1820256 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 1820197
Query: 286 catgtggggcttgggtgtccgagtgc 311
| |||||||| |||| || |||||||
Sbjct: 1820196 cttgtggggcatgggcgtgcgagtgc 1820171
Score = 81.8 bits (41), Expect = 4e-013
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 1792196 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 1792255
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 1792256 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 1792315
Query: 125 tcttggtgcccccagct 141
|||||||||||||||||
Sbjct: 1792316 tcttggtgcccccagct 1792332
Score = 75.8 bits (38), Expect = 2e-011
Identities = 107/130 (82%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || ||||| |||||||||||||| |||||||||||||| |
Sbjct: 1694656 aggttgtttcttatcgcactgtggatgaaactcgacattggaggcaattgttaatggcat 1694597
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 1694596 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 1694537
Query: 286 catgtggggc 295
| ||||||||
Sbjct: 1694536 cttgtggggc 1694527
Score = 73.8 bits (37), Expect = 9e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 1827599 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 1827658
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 1827659 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 1827718
Query: 125 tcttggtgcccccagct 141
|||||||| ||||||||
Sbjct: 1827719 tcttggtgtccccagct 1827735
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| || ||||| |||||||||||||| ||||||||||||
Sbjct: 1816918 caggttgtttcttgacgcattgtggatggaactcgacgatggaagcaattg 1816868
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 1684520 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 1684467
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 1813827 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 1813774
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 164 acaggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggt 223
|||||||||||||| || || || ||||||||||| ||| ||||||||||||| ||||
Sbjct: 1793067 acaggttgtttcttaactcactgtggatggaactcaacaacagaagcaattgttactggt 1793126
Query: 224 gt 225
||
Sbjct: 1793127 gt 1793128
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 1820042 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 1819987
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 1694382 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 1694327
Score = 46.1 bits (23), Expect = 0.020
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| ||||| || |||| |||||| || ||||||||||||
Sbjct: 1687918 caggttgtttcttgacacactgtggatagaactccacgatggaagcaattg 1687868
>gb|CH401185.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000022
genomic scaffold, whole genome shotgun sequence
Length = 1402826
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| ||| |
Sbjct: 309648 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccatat 309589
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
||||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 309588 tgggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 309529
Query: 308 gtg 310
|||
Sbjct: 309528 gtg 309526
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| |||||
Sbjct: 208874 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccacat 208815
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
| ||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 208814 ttggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 208755
Query: 308 gtg 310
|||
Sbjct: 208754 gtg 208752
Score = 99.6 bits (50), Expect = 2e-018
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 316659 aggttgtttcttgtcgcactgtggatggaactcgacattggaggcaattgttaatggcgt 316600
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 316599 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 316540
Query: 286 catgtggggcttgggtgtccgagtgc 311
| |||||||| |||| || |||||||
Sbjct: 316539 cttgtggggcatgggcgtgcgagtgc 316514
Score = 73.8 bits (37), Expect = 9e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 323772 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 323831
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 323832 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 323891
Query: 125 tcttggtgcccccagct 141
|||||||| ||||||||
Sbjct: 323892 tcttggtgtccccagct 323908
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| || ||||| |||||||||||||| ||||||||||||
Sbjct: 313261 caggttgtttcttgacgcattgtggatggaactcgacgatggaagcaattg 313211
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 209397 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 209344
Score = 56.0 bits (28), Expect = 2e-005
Identities = 89/108 (82%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 189 gatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaatacca-cac 247
|||| |||||||||||||| |||||||||||||| | || | | |||||| ||| ||
Sbjct: 220468 gatgaaactcgacattggaggcaattgttaatggcataccgcttgtggcaatgccaccat 220409
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggc 295
||||| ||||| || ||||| ||||| ||| |||||||| ||||||||
Sbjct: 220408 tgggctgaccaaccaaccatttcaaagtatgtggagagcttgtggggc 220361
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 310171 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 310118
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 316385 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 316330
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 220216 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 220161
Score = 46.1 bits (23), Expect = 0.020
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| ||||| || |||| |||||| || ||||||||||||
Sbjct: 212795 caggttgtttcttgacacactgtggatagaactccacgatggaagcaattg 212745
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| ||| |
Sbjct: 4613547 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccatat 4613488
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
||||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 4613487 tgggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 4613428
Query: 308 gtg 310
|||
Sbjct: 4613427 gtg 4613425
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| |||||
Sbjct: 4512773 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccacat 4512714
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
| ||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 4512713 ttggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 4512654
Query: 308 gtg 310
|||
Sbjct: 4512653 gtg 4512651
Score = 99.6 bits (50), Expect = 2e-018
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 4620558 aggttgtttcttgtcgcactgtggatggaactcgacattggaggcaattgttaatggcgt 4620499
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 4620498 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 4620439
Query: 286 catgtggggcttgggtgtccgagtgc 311
| |||||||| |||| || |||||||
Sbjct: 4620438 cttgtggggcatgggcgtgcgagtgc 4620413
Score = 73.8 bits (37), Expect = 9e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 4627671 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 4627730
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 4627731 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 4627790
Query: 125 tcttggtgcccccagct 141
|||||||| ||||||||
Sbjct: 4627791 tcttggtgtccccagct 4627807
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| || ||||| |||||||||||||| ||||||||||||
Sbjct: 4617160 caggttgtttcttgacgcattgtggatggaactcgacgatggaagcaattg 4617110
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 4513296 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 4513243
Score = 56.0 bits (28), Expect = 2e-005
Identities = 89/108 (82%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 189 gatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaatacca-cac 247
|||| |||||||||||||| |||||||||||||| | || | | |||||| ||| ||
Sbjct: 4524367 gatgaaactcgacattggaggcaattgttaatggcataccgcttgtggcaatgccaccat 4524308
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggc 295
||||| ||||| || ||||| ||||| ||| |||||||| ||||||||
Sbjct: 4524307 tgggctgaccaaccaaccatttcaaagtatgtggagagcttgtggggc 4524260
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 4614070 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 4614017
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 4620284 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 4620229
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 4524115 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 4524060
Score = 46.1 bits (23), Expect = 0.020
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| ||||| || |||| |||||| || ||||||||||||
Sbjct: 4516694 caggttgtttcttgacacactgtggatagaactccacgatggaagcaattg 4516644
>emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052O21,
complete sequence
Length = 166475
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| ||| |
Sbjct: 133645 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccatat 133586
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
||||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 133585 tgggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 133526
Query: 308 gtg 310
|||
Sbjct: 133525 gtg 133523
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| |||||
Sbjct: 4338 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccacat 4279
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
| ||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 4278 ttggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 4219
Query: 308 gtg 310
|||
Sbjct: 4218 gtg 4216
Score = 99.6 bits (50), Expect = 2e-018
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 140657 aggttgtttcttgtcgcactgtggatggaactcgacattggaggcaattgttaatggcgt 140598
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 140597 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 140538
Query: 286 catgtggggcttgggtgtccgagtgc 311
| |||||||| |||| || |||||||
Sbjct: 140537 cttgtggggcatgggcgtgcgagtgc 140512
Score = 81.8 bits (41), Expect = 4e-013
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 112537 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 112596
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 112597 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 112656
Query: 125 tcttggtgcccccagct 141
|||||||||||||||||
Sbjct: 112657 tcttggtgcccccagct 112673
Score = 75.8 bits (38), Expect = 2e-011
Identities = 107/130 (82%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || ||||| |||||||||||||| |||||||||||||| |
Sbjct: 14997 aggttgtttcttatcgcactgtggatgaaactcgacattggaggcaattgttaatggcat 14938
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 14937 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 14878
Query: 286 catgtggggc 295
| ||||||||
Sbjct: 14877 cttgtggggc 14868
Score = 73.8 bits (37), Expect = 9e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 147940 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 147999
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 148000 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 148059
Query: 125 tcttggtgcccccagct 141
|||||||| ||||||||
Sbjct: 148060 tcttggtgtccccagct 148076
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| || ||||| |||||||||||||| ||||||||||||
Sbjct: 137259 caggttgtttcttgacgcattgtggatggaactcgacgatggaagcaattg 137209
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 4861 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 4808
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 134168 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 134115
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 164 acaggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggt 223
|||||||||||||| || || || ||||||||||| ||| ||||||||||||| ||||
Sbjct: 113408 acaggttgtttcttaactcactgtggatggaactcaacaacagaagcaattgttactggt 113467
Query: 224 gt 225
||
Sbjct: 113468 gt 113469
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 140383 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 140328
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 14723 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 14668
Score = 46.1 bits (23), Expect = 0.020
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| ||||| || |||| |||||| || ||||||||||||
Sbjct: 8259 caggttgtttcttgacacactgtggatagaactccacgatggaagcaattg 8209
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
complete sequence
Length = 149134
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| |||||
Sbjct: 146018 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccacat 145959
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
| ||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 145958 ttggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 145899
Query: 308 gtg 310
|||
Sbjct: 145898 gtg 145896
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 146541 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 146488
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| ||| |
Sbjct: 7112454 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccatat 7112395
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
||||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 7112394 tgggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 7112335
Query: 308 gtg 310
|||
Sbjct: 7112334 gtg 7112332
Score = 109 bits (55), Expect = 2e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 188 ggatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacac 247
|||||||||||||| ||||| ||||||||||||||||| || | | |||||| |||||
Sbjct: 6983147 ggatggaactcgacgttggaggcaattgttaatggtgtaccgctagtggcaatgccacat 6983088
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccga 307
| ||| ||||| || ||||||||||| |||||||||||| |||||||| |||||||| ||
Sbjct: 6983087 ttggctgaccaaccaaccatatcaaagtatatggagagcttgtggggcatgggtgtcaga 6983028
Query: 308 gtg 310
|||
Sbjct: 6983027 gtg 6983025
Score = 99.6 bits (50), Expect = 2e-018
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 7119466 aggttgtttcttgtcgcactgtggatggaactcgacattggaggcaattgttaatggcgt 7119407
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 7119406 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 7119347
Query: 286 catgtggggcttgggtgtccgagtgc 311
| |||||||| |||| || |||||||
Sbjct: 7119346 cttgtggggcatgggcgtgcgagtgc 7119321
Score = 81.8 bits (41), Expect = 4e-013
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 7091346 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 7091405
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 7091406 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 7091465
Query: 125 tcttggtgcccccagct 141
|||||||||||||||||
Sbjct: 7091466 tcttggtgcccccagct 7091482
Score = 75.8 bits (38), Expect = 2e-011
Identities = 107/130 (82%)
Strand = Plus / Minus
Query: 166 aggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggtgt 225
|||||||||||| | || || ||||| |||||||||||||| |||||||||||||| |
Sbjct: 6993806 aggttgtttcttatcgcactgtggatgaaactcgacattggaggcaattgttaatggcat 6993747
Query: 226 gccaatggcggcaataccacactgggcagaccagccgaccatatcaaaatatatggagag 285
|| | | |||||| ||||| ||||| ||||| || ||||| ||||| ||| |||||||
Sbjct: 6993746 accgcttgtggcaatgccacattgggctgaccaaccaaccatttcaaagtatgtggagag 6993687
Query: 286 catgtggggc 295
| ||||||||
Sbjct: 6993686 cttgtggggc 6993677
Score = 73.8 bits (37), Expect = 9e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 7126749 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 7126808
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 7126809 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 7126868
Query: 125 tcttggtgcccccagct 141
|||||||| ||||||||
Sbjct: 7126869 tcttggtgtccccagct 7126885
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| || ||||| |||||||||||||| ||||||||||||
Sbjct: 7116068 caggttgtttcttgacgcattgtggatggaactcgacgatggaagcaattg 7116018
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 6983670 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 6983617
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 7112977 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 7112924
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 164 acaggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggt 223
|||||||||||||| || || || ||||||||||| ||| ||||||||||||| ||||
Sbjct: 7092217 acaggttgtttcttaactcactgtggatggaactcaacaacagaagcaattgttactggt 7092276
Query: 224 gt 225
||
Sbjct: 7092277 gt 7092278
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 7119192 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 7119137
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 6993532 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 6993477
Score = 46.1 bits (23), Expect = 0.020
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 165 caggttgtttcttcacacattgcggatggaactcgacattggaagcaattg 215
||||||||||||| ||||| || |||| |||||| || ||||||||||||
Sbjct: 6987068 caggttgtttcttgacacactgtggatagaactccacgatggaagcaattg 6987018
>gb|CF317485.1|CF317485 HD--07-D05.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-D05, mRNA sequence
Length = 554
Score = 105 bits (53), Expect = 2e-020
Identities = 149/181 (82%)
Strand = Plus / Plus
Query: 131 tgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacattgcgga 190
|||||||||||||| | || || || || || |||||||||||||| | || || |||
Sbjct: 301 tgcccccagctggagatgcttgctcacaaggccacaggttgtttcttgtcgcactgtgga 360
Query: 191 tggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaataccacactgg 250
||||||||||||||||| |||||||||||||| || || | | |||||| ||||| |||
Sbjct: 361 tggaactcgacattggaggcaattgttaatggcgtaccgcttgtggcaatgccacattgg 420
Query: 251 gcagaccagccgaccatatcaaaatatatggagagcatgtggggcttgggtgtccgagtg 310
|| ||||| || ||||| ||||| ||| |||||||| |||||||| |||| || ||||||
Sbjct: 421 gctgaccaaccaaccatttcaaagtatgtggagagcttgtggggcatgggcgtgcgagtg 480
Query: 311 c 311
|
Sbjct: 481 c 481
>dbj|AK103242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123I02, full
insert sequence
Length = 1696
Score = 91.7 bits (46), Expect = 4e-016
Identities = 172/214 (80%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 940 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 999
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 1000 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 1059
Query: 125 tcttggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacat 184
|||||||| |||||||| || || || | || ||||| ||||| |||||||| || ||
Sbjct: 1060 tcttggtgtccccagcttgaggtcttatctcacaaagccacaggctgtttcttaactcac 1119
Query: 185 tgcggatggaactcgacattggaagcaattgtta 218
|| ||||||||||| ||| |||||||||||||
Sbjct: 1120 tgtggatggaactcaacaacagaagcaattgtta 1153
>dbj|AK105967.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E08, full
insert sequence
Length = 1661
Score = 91.7 bits (46), Expect = 4e-016
Identities = 172/214 (80%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 973 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 1032
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 1033 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 1092
Query: 125 tcttggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacat 184
|||||||| |||||||| || || || | || ||||| ||||| |||||||| || ||
Sbjct: 1093 tcttggtgtccccagcttgaggtcttatctcacaaagccacaggctgtttcttaactcac 1152
Query: 185 tgcggatggaactcgacattggaagcaattgtta 218
|| ||||||||||| ||| |||||||||||||
Sbjct: 1153 tgtggatggaactcaacaacagaagcaattgtta 1186
>ref|XM_474841.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1413
Score = 91.7 bits (46), Expect = 4e-016
Identities = 172/214 (80%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 913 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 972
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 973 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 1032
Query: 125 tcttggtgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacat 184
|||||||| |||||||| || || || | || ||||| ||||| |||||||| || ||
Sbjct: 1033 tcttggtgtccccagcttgaggtcttatctcacaaagccacaggctgtttcttaactcac 1092
Query: 185 tgcggatggaactcgacattggaagcaattgtta 218
|| ||||||||||| ||| |||||||||||||
Sbjct: 1093 tgtggatggaactcaacaacagaagcaattgtta 1126
>gb|CL518352.1|CL518352 SAE8F05 Flanking Sequence Tag of Oryza sativa T-DNA insertion lines
Oryza sativa (japonica cultivar-group) genomic, DNA
sequence
Length = 471
Score = 81.8 bits (41), Expect = 4e-013
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 157 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 216
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 217 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 276
Query: 125 tcttggtgcccccagct 141
|||||||||||||||||
Sbjct: 277 tcttggtgcccccagct 293
>gb|AACV01006947.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006947, whole
genome shotgun sequence
Length = 39257
Score = 81.8 bits (41), Expect = 4e-013
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 1554 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 1613
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 1614 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 1673
Query: 125 tcttggtgcccccagct 141
|||||||||||||||||
Sbjct: 1674 tcttggtgcccccagct 1690
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 164 acaggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggt 223
|||||||||||||| || || || ||||||||||| ||| ||||||||||||| ||||
Sbjct: 2425 acaggttgtttcttaactcactgtggatggaactcaacaacagaagcaattgttactggt 2484
Query: 224 gt 225
||
Sbjct: 2485 gt 2486
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 81.8 bits (41), Expect = 4e-013
Identities = 113/137 (82%)
Strand = Plus / Minus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 4244969 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 4244910
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 4244909 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 4244850
Query: 125 tcttggtgcccccagct 141
|||||||||||||||||
Sbjct: 4244849 tcttggtgcccccagct 4244833
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 164 acaggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggt 223
|||||||||||||| || || || ||||||||||| ||| ||||||||||||| ||||
Sbjct: 4244098 acaggttgtttcttaactcactgtggatggaactcaacaacagaagcaattgttactggt 4244039
Query: 224 gt 225
||
Sbjct: 4244038 gt 4244037
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 81.8 bits (41), Expect = 4e-013
Identities = 113/137 (82%)
Strand = Plus / Minus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| || |||||||| | ||||||||| ||||||||| ||||||| ||||||||
Sbjct: 18295676 gagctgggtaatggattttgcaattctggtaaaccattcctttgggtcgtgaggtcctgt 18295617
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 18295616 aatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 18295557
Query: 125 tcttggtgcccccagct 141
|||||||||||||||||
Sbjct: 18295556 tcttggtgcccccagct 18295540
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 164 acaggttgtttcttcacacattgcggatggaactcgacattggaagcaattgttaatggt 223
|||||||||||||| || || || ||||||||||| ||| ||||||||||||| ||||
Sbjct: 18294805 acaggttgtttcttaactcactgtggatggaactcaacaacagaagcaattgttactggt 18294746
Query: 224 gt 225
||
Sbjct: 18294745 gt 18294744
>gb|CB672602.1|CB672602 OSJNEe06L11.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06L11 3', mRNA sequence
Length = 772
Score = 77.8 bits (39), Expect = 6e-012
Identities = 162/203 (79%)
Strand = Plus / Minus
Query: 16 tggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaa 75
|||||| | |||||| || ||||| ||| ||||||| |||||||| || ||||||||
Sbjct: 772 tggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgtgatgaacacaa 713
Query: 76 gttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtttcttggtgccc 135
| | || | ||||| ||||||||||||||||| | ||||| || ||||||||||| ||
Sbjct: 712 gctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtttcttggtgtcc 653
Query: 136 ccagctggaagttctagcacataaagctacaggttgtttcttcacacattgcggatggaa 195
|||||| || || || | || ||||| ||||| |||||||| || || || ||||||||
Sbjct: 652 ccagcttgaggtcttatctcacaaagccacaggctgtttcttaactcactgtggatggaa 593
Query: 196 ctcgacattggaagcaattgtta 218
||| ||| |||||||||||||
Sbjct: 592 ctcaacaacagaagcaattgtta 570
>gb|AACV01008736.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008736,
whole genome shotgun sequence
Length = 21038
Score = 73.8 bits (37), Expect = 9e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 5 gagcttggcaatggattgtacaattctggcaaaccattcatttgggttgtgaggtcaaac 64
||||| ||||||||||| | |||||| || ||||| ||| ||||||| ||||||||
Sbjct: 276 gagctgggcaatggattttgcaattccggtaaaccgttcctttgggtcgtgaggtcctgt 335
Query: 65 gaagaacacaagttgtccaatgaacttcgtgacaagtgcaaggaacgtggccttattgtt 124
|| ||||||||| | || | ||||| ||||||||||||||||| | ||||| || |||
Sbjct: 336 gatgaacacaagctatcagaagaactccgtgacaagtgcaaggagaggggcctaatcgtt 395
Query: 125 tcttggtgcccccagct 141
|||||||| ||||||||
Sbjct: 396 tcttggtgtccccagct 412
>gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI34, mRNA
sequence
Length = 294
Score = 71.9 bits (36), Expect = 3e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 131 tgcccccagctggaagttctagcacataaagctacaggttgtttcttcacacattgcgga 190
|||||||||||||| || || || || || || |||||||||||||| | || || |||
Sbjct: 97 tgcccccagctggaggtgcttgctcacaaggccacaggttgtttcttgtcgcactgtgga 38
Query: 191 tggaactcgacattggaagcaattgttaatgg 222
| ||||||||||||||| ||||||||||||||
Sbjct: 37 tagaactcgacattggaggcaattgttaatgg 6
>dbj|AK110892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A01, full
insert sequence
Length = 1521
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 154 acataaagctacaggttgtttcttcacacattgcggatggaactcgacattggaagcaat 213
|||||| || |||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1072 acataaggcaacaggttgtttcttgacgcattgtggatggaactcgacgatggaagcaat 1131
Query: 214 tg 215
||
Sbjct: 1132 tg 1133
>ref|XM_474839.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1389
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 154 acataaagctacaggttgtttcttcacacattgcggatggaactcgacattggaagcaat 213
|||||| || |||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1038 acataaggcaacaggttgtttcttgacgcattgtggatggaactcgacgatggaagcaat 1097
Query: 214 tg 215
||
Sbjct: 1098 tg 1099
>ref|XM_474826.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1137
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 972 caattcaggcaagccattcctttgggttgtgaggtccaacgaggagcacaagtt 1025
>gb|AACV01008725.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008725,
whole genome shotgun sequence
Length = 1214
Score = 56.0 bits (28), Expect = 2e-005
Identities = 89/108 (82%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 189 gatggaactcgacattggaagcaattgttaatggtgtgccaatggcggcaatacca-cac 247
|||| |||||||||||||| |||||||||||||| | || | | |||||| ||| ||
Sbjct: 26 gatgaaactcgacattggaggcaattgttaatggcataccgcttgtggcaatgccaccat 85
Query: 248 tgggcagaccagccgaccatatcaaaatatatggagagcatgtggggc 295
||||| ||||| || ||||| ||||| ||| |||||||| ||||||||
Sbjct: 86 tgggctgaccaaccaaccatttcaaagtatgtggagagcttgtggggc 133
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 278 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 333
>dbj|AK109506.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D12, full
insert sequence
Length = 1560
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 1012 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 1065
>dbj|AK110950.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-H12, full
insert sequence
Length = 1410
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 1016 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 1069
>ref|XM_474838.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1008
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 25 caattctggcaaaccattcatttgggttgtgaggtcaaacgaagaacacaagtt 78
|||||| ||||| |||||| |||||||||||||||| || || || ||||||||
Sbjct: 837 caattcaggcaagccattcctttgggttgtgaggtccaatgaggagcacaagtt 890
>gb|CF314166.1|CF314166 HD--02-J11.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--02-J11, mRNA sequence
Length = 504
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 47 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 102
>gb|CF320817.1|CF320817 HD--11-N12.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--11-N12, mRNA sequence
Length = 422
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 440 atgcagaatggagggagctcggccaagaatattacagaattcgccgcgaagtattc 495
|||||| | ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct: 47 atgcaggaaggagggagctctgacaagaatattgctgaatttgctgcgaagtattc 102
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 865,007
Number of Sequences: 438736
Number of extensions: 865007
Number of successful extensions: 17147
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16820
Number of HSP's gapped (non-prelim): 312
length of query: 545
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 524
effective length of database: 2,791,206,460
effective search space: 1462592185040
effective search space used: 1462592185040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)