BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-gr... 50 0.001
dbj|AK066908.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AACV01009971.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromoso... 50 0.001
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|CB652409.1|CB652409 OSJNEc02E17.f OSJNEc Oryza sativa (j... 44 0.077
dbj|AG210496.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.30
dbj|AG206342.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.30
dbj|AB155082.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.30
gb|CB651198.1|CB651198 OSJNEb16B05.f OSJNEb Oryza sativa (j... 42 0.30
gb|CB666551.1|CB666551 OSJNEd13I01.f OSJNEd Oryza sativa (j... 42 0.30
gb|CB666552.1|CB666552 OSJNEd13I01.r OSJNEd Oryza sativa (j... 42 0.30
gb|CB672843.1|CB672843 OSJNEe07B16.f OSJNEe Oryza sativa (j... 42 0.30
gb|CB675342.1|CB675342 OSJNEe11A17.f OSJNEe Oryza sativa (j... 42 0.30
gb|CF309589.1|CF309589 ABF--03-N08.b1 ABF3-overexpressing t... 42 0.30
dbj|AK062029.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.30
dbj|AK065793.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.30
dbj|AK068304.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.30
dbj|AK070962.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.30
gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
gb|AACV01009973.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.30
ref|NM_190276.1| Oryza sativa (japonica cultivar-group), p... 42 0.30
ref|XM_472851.1| Oryza sativa (japonica cultivar-group), p... 42 0.30
ref|XM_472852.1| Oryza sativa (japonica cultivar-group), p... 42 0.30
ref|XM_472855.1| Oryza sativa (japonica cultivar-group), p... 42 0.30
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.30
dbj|AP003418.2| Oryza sativa (japonica cultivar-group) geno... 42 0.30
dbj|AP003349.4| Oryza sativa (japonica cultivar-group) geno... 42 0.30
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.30
>emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-group) chromosome 4 clone OSJNBa0053D18,
*** SEQUENCING IN PROGRESS ***
Length = 156939
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 141905 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 141945
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 128822 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 128862
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 120597 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 120637
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 119170 tacagattctccatctcatggtcaagaattcttccaa 119206
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 94914 tttggtgacagagtgaaacattggatcaccttcaatgagcc 94954
>dbj|AK066908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092D04, full
insert sequence
Length = 3403
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 1143 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 1183
>gb|AACV01009971.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009971, whole
genome shotgun sequence
Length = 22179
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 1856 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 1896
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 1297419 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 1297379
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 1344410 tttggtgacagagtgaaacattggatcaccttcaatgagcc 1344370
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 1320154 tacagattctccatctcatggtcaagaattcttccaa 1320118
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 1318727 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 1318687
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 1310502 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 1310462
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 1599524 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 1599484
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 1632498 tttggtgacagagtgaaacattggatcaccttcaatgagcc 1632458
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 20743623 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 20743583
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 20776597 tttggtgacagagtgaaacattggatcaccttcaatgagcc 20776557
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21,
complete sequence
Length = 160155
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 14407 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 14367
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 61398 tttggtgacagagtgaaacattggatcaccttcaatgagcc 61358
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 37142 tacagattctccatctcatggtcaagaattcttccaa 37106
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 35715 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 35675
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 27490 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 27450
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || |||||| |||| |||||||||||
Sbjct: 23693495 tttggtgaccgagtgaaacattggatcaccttcaatgagcc 23693455
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 23740486 tttggtgacagagtgaaacattggatcaccttcaatgagcc 23740446
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 23716230 tacagattctccatctcatggtcaagaattcttccaa 23716194
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 23714803 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 23714763
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 23706578 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 23706538
>gb|CB652409.1|CB652409 OSJNEc02E17.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02E17 5', mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.077
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 325 tgcttcaagatntttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||| ||||||||| |||| || ||||| |||| |||||||||||
Sbjct: 514 tgcttcaagaagtttggtgacagagtgaaaaattggatcaccttcaatgagcc 566
>dbj|AG210496.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF1025_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF1025, genomic survey sequence
Length = 391
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 97 tacagattctccatctcatggtcaagaattcttccaa 61
>dbj|AG206342.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND4541_0_403_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND4541, genomic survey sequence
Length = 205
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 144 tttggtgacagagtgaaacattggatcaccttcaatgagcc 184
>dbj|AB155082.1| Oryza sativa (japonica cultivar-group) DNA, clone:T18915T, 3'
flanking sequence of Tos17 insertion in rice strain
NF1020, genomic survey sequence
Length = 765
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 97 tacagattctccatctcatggtcaagaattcttccaa 61
>gb|CB651198.1|CB651198 OSJNEb16B05.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16B05 5', mRNA sequence
Length = 817
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 398 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 438
>gb|CB666551.1|CB666551 OSJNEd13I01.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13I01 5', mRNA sequence
Length = 776
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 575 tttggtgacagagtgaaacattggatcaccttcaatgagcc 615
>gb|CB666552.1|CB666552 OSJNEd13I01.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13I01 3', mRNA sequence
Length = 819
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 639 tttggtgacagagtgaaacattggatcaccttcaatgagcc 599
>gb|CB672843.1|CB672843 OSJNEe07B16.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07B16 5', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 610 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 650
>gb|CB675342.1|CB675342 OSJNEe11A17.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11A17 5', mRNA sequence
Length = 739
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 606 tttggtgacagagtgaaacattggatcaccttcaatgagcc 646
>gb|CF309589.1|CF309589 ABF--03-N08.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-N08, mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 212 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 252
>dbj|AK062029.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G08, full
insert sequence
Length = 1777
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 627 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 667
>dbj|AK065793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041M21, full
insert sequence
Length = 1976
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 674 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 714
>dbj|AK068304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145J04, full
insert sequence
Length = 2225
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 1467 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 1507
>dbj|AK070962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066D17, full
insert sequence
Length = 1853
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 583 tttggtgacagagtgaaacattggatcaccttcaatgagcc 623
>gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002847, whole
genome shotgun sequence
Length = 99512
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 76524 tttggagacagagtaaagcattggataacaatcaatgagcc 76484
>gb|AACV01009973.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009973, whole
genome shotgun sequence
Length = 43309
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 8712 tttggtgacagagtgaaacattggatcaccttcaatgagcc 8672
>gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010847, whole
genome shotgun sequence
Length = 28761
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 20056 tacagattctccatctcatggtcaagaattcttccaa 20020
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 18629 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 18589
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 10406 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 10366
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 39080971 tttggagacagagtaaagcattggataacaatcaatgagcc 39081011
>ref|NM_190276.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1566
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 607 tttggagacagagtaaagcattggataacaatcaatgagcc 647
>ref|XM_472851.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1602
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 571 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 611
>ref|XM_472852.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1590
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 571 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 611
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 331 tacagattctccatctcatggtcaagaattcttccaa 367
>ref|XM_472855.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1521
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 559 tttggtgacagagtgaaacattggatcaccttcaatgagcc 599
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 13528354 tttggagacagagtaaagcattggataacaatcaatgagcc 13528394
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0506A10
Length = 145265
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 18281 tttggagacagagtaaagcattggataacaatcaatgagcc 18321
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0674H09
Length = 142955
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 73934 tttggagacagagtaaagcattggataacaatcaatgagcc 73974
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 2203628 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 2203668
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 2195405 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 2195445
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 2193978 tacagattctccatctcatggtcaagaattcttccaa 2194014
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 13246870 tttggagacagagtaaagcattggataacaatcaatgagcc 13246910
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 2203628 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 2203668
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||||||||| || || |||||| |||| |||||||||||
Sbjct: 2195405 tttggtgaccgggtgaaacattggatcaccttcaatgagcc 2195445
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 97 tacagattctcattgtcatggtcgagaattcttccaa 133
||||||||||| | |||||||| |||||||||||||
Sbjct: 2193978 tacagattctccatctcatggtcaagaattcttccaa 2194014
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 38448591 tttggagacagagtaaagcattggataacaatcaatgagcc 38448631
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.30
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 39000301 tttggagacagagtaaagcattggataacaatcaatgagcc 39000341
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 531,219
Number of Sequences: 438736
Number of extensions: 531219
Number of successful extensions: 8699
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8387
Number of HSP's gapped (non-prelim): 312
length of query: 541
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 520
effective length of database: 2,791,206,460
effective search space: 1451427359200
effective search space used: 1451427359200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)